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Volumn 14, Issue 2, 2012, Pages 97-103

Computer simulations of protein folding

Author keywords

computational science; computer simulation; Protein folding; scientific computing

Indexed keywords

ATOMISTIC INTERACTIONS; COMPUTATIONAL SCIENCE;

EID: 84858271659     PISSN: 15219615     EISSN: None     Source Type: Journal    
DOI: 10.1109/MCSE.2012.21     Document Type: Review
Times cited : (2)

References (20)
  • 1
    • 39149087014 scopus 로고    scopus 로고
    • Protein folding studied by single-molecule FRET
    • B. Schuler and W.A. Eaton, "Protein Folding Studied by Single-Molecule FRET," Current Opinion in Structural Biology, vol. 18, no. 1, 2008, pp. 16-26.
    • (2008) Current Opinion in Structural Biology , vol.18 , Issue.1 , pp. 16-26
    • Schuler, B.1    Eaton, W.A.2
  • 6
    • 0347357617 scopus 로고    scopus 로고
    • Protein folding and misfolding
    • DOI 10.1038/nature02261
    • C.M. Dobson, "Protein Folding and Misfolding," Nature, vol. 426, no. 6968, 2003, pp. 884-890. (Pubitemid 38056880)
    • (2003) Nature , vol.426 , Issue.6968 , pp. 884-890
    • Dobson, C.M.1
  • 7
    • 48249134448 scopus 로고    scopus 로고
    • Protein folding problem
    • doi:10.1146/annurev.biophys.37.092707.153558
    • K.A. Dill et al., "Protein Folding Problem," Ann. Rev. Biophysics, vol. 37, no. 1, 2008, pp. 289-316; doi:10.1146/annurev.biophys.37. 092707.153558.
    • (2008) Ann. Rev. Biophysics , vol.37 , Issue.1 , pp. 289-316
    • Dill, K.A.1
  • 8
    • 0015859467 scopus 로고
    • Principles that govern the folding of protein chains
    • C.B. Anfinsen, "Principles that Govern the Folding of Protein Chains," Science, vol. 181, no. 4096, 1973, pp. 223-230.
    • (1973) Science , vol.181 , Issue.4096 , pp. 223-230
    • Anfinsen, C.B.1
  • 9
    • 0032606941 scopus 로고    scopus 로고
    • Folding dynamics with nonadditive forces: A simulation study of a designed helical protein and a random heteropolymer
    • doi:10.1063/1.479101
    • S. Takada, Z. Luthey-Schulten, and P.G. Wolynes, "Folding Dynamics with Nonadditive Forces: A Simulation Study of a Designed Helical Protein and a Random Heteropolymer," J. Chemical Physics, vol. 110, no. 23, 1999; doi:10.1063/1.479101.
    • (1999) J. Chemical Physics , vol.110 , Issue.23
    • Takada, S.1    Luthey-Schulten, Z.2    Wolynes, P.G.3
  • 10
    • 0034984144 scopus 로고    scopus 로고
    • Protein folding theory: From lattice to all-atom models
    • DOI 10.1146/annurev.biophys.30.1.361
    • L. Mirny and E. Shakhnovich, "Protein Folding Theory: From Lattice to All-Atom Models," Ann. Rev. Biophysics and Biomolecular Structures, vol. 30, 2001, pp. 361-396. (Pubitemid 32566168)
    • (2001) Annual Review of Biophysics and Biomolecular Structure , vol.30 , pp. 361-396
    • Mirny, L.1    Shakhnovich, E.2
  • 13
    • 0034685604 scopus 로고    scopus 로고
    • Topological and energetic factors: What determines the structural details of the transition state ensemble and 'en-route' intermediates for protein folding? An investigation for small globular proteins
    • C. Clementi, H. Nymeyera, and J.N. Onuchic, "Topological and Energetic Factors: What Determines the Structural Details of the Transition State Ensemble and 'En-route' Intermediates for Protein Folding? An Investigation for Small Globular Proteins," J. Molecular Biology, vol. 298, no. 5, 2000, pp. 937-953.
    • (2000) J. Molecular Biology , vol.298 , Issue.5 , pp. 937-953
    • Clementi, C.1    Nymeyera, H.2    Onuchic, J.N.3
  • 14
    • 80053512774 scopus 로고    scopus 로고
    • Confinement in nanopores can destabilize alpha-helix folding proteins and stabilize the beta structures
    • doi:10.1063/1.3641482
    • L. Javidpour and M. Sahimi, "Confinement in Nanopores Can Destabilize Alpha-Helix Folding Proteins and Stabilize the Beta Structures," J. Chemical Physics, vol. 135, no. 12, 2011; doi:10.1063/1.3641482.
    • J. Chemical Physics , vol.135 , Issue.12 , pp. 2011
    • Javidpour, L.1    Sahimi, M.2
  • 16
    • 0032561237 scopus 로고    scopus 로고
    • Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
    • DOI 10.1126/science.282.5389.740
    • Y. Duan and P.A. Kollman, "Pathways to a Protein Folding Intermediate Observed in a 1-Microsecond Simulation in Aqueous Solution," Science, vol. 282, no. 5389, 1998, pp. 740-744. (Pubitemid 28489385)
    • (1998) Science , vol.282 , Issue.5389 , pp. 740-744
    • Duan, Y.1    Kollman, P.A.2
  • 17
    • 76149136021 scopus 로고    scopus 로고
    • Molecular simulation of Ab initio protein folding for a millisecond folder NTL 9 (139)
    • V.A. Voelz et al., "Molecular Simulation of Ab Initio Protein Folding for a Millisecond Folder NTL 9 (139)," J. Am. Chemical Soc., vol. 132, no. 5, 2010, pp. 1526-1528.
    • (2010) J. Am. Chemical Soc. , vol.132 , Issue.5 , pp. 1526-1528
    • Voelz, V.A.1
  • 18
    • 9244260521 scopus 로고    scopus 로고
    • Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides
    • DOI 10.1073/pnas.0407273101
    • H.D. Nguyen and C.K. Hall, "Molecular Dynamics Simulations of Spontaneous Fibril Formation by Random-Coil Peptides," Proc. Nat'l Academy of Science, Nat'l Academy of Sciences, vol. 101, no. 46, 2004, pp. 16180-16185. (Pubitemid 39552819)
    • (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , Issue.46 , pp. 16180-16185
    • Nguyen, H.D.1    Hall, C.K.2
  • 19
    • 61449229438 scopus 로고    scopus 로고
    • Molecular simulation of protein dynamics in nanopores. II. Diffusion
    • doi:10.1063/1.3080770
    • L. Javidpour, M.R. Rahimi Tabar, and M. Sahimi, "Molecular Simulation of Protein Dynamics in Nanopores. II. Diffusion," J. Chemical Physics, vol. 130, no. 8, 2009; doi:10.1063/1.3080770.
    • (2009) J. Chemical Physics , vol.130 , Issue.8
    • Javidpour, L.1    Rahimi Tabar, M.R.2    Sahimi, M.3
  • 20
    • 41049107127 scopus 로고    scopus 로고
    • Molecular simulation of protein dynamics in nanopores. I. Stability and folding
    • DOI 10.1063/1.2894299
    • L. Javidpour, M.R. Rahimi Tabar, and M. Sahimi, "Molecular Simulation of Protein Dynamics in Nanopores. I. Stability and Folding," J. Chemical Physics, vol. 128, no. 11, 2008; doi:10.1063/1.2894299. (Pubitemid 351423250)
    • (2008) Journal of Chemical Physics , vol.128 , Issue.11 , pp. 115105
    • Javidpour, L.1    Tabar, M.R.R.2    Sahimi, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.