-
1
-
-
14744300520
-
Metabolomics applications of FT-ICR mass spectrometry
-
DOI 10.1002/mas.20011
-
Brown, S.C., Kruppa, G., Dasseux, J.-L. (2005) Metabolomics applications of FT-ICR mass spectrometry. Mass Spec. Rev. 24, 223-231. (Pubitemid 40328975)
-
(2005)
Mass Spectrometry Reviews
, vol.24
, Issue.2
, pp. 223-231
-
-
Brown, S.C.1
Kruppa, G.2
Dasseux, J.-L.3
-
2
-
-
0037103713
-
Resolution of 11 000 compositionally distinct components in a single electrospray ionization fourier transform ion cyclotron resonance mass spectrum of crude oil
-
DOI 10.1021/ac020146b
-
Hughey, C.A., Rodgers, R.P., Marshall, A.G. (2002) Resolution of 11,000 compositionally distinct components in a single electrospray ionization Fourier transform ion cyclotron resonance mass spectrum of crude oil. Anal. Chem. 74, 4145-4149. (Pubitemid 34912915)
-
(2002)
Analytical Chemistry
, vol.74
, Issue.16
, pp. 4145-4149
-
-
Hughey, C.A.1
Rodgers, R.P.2
Marshall, A.G.3
-
3
-
-
12344282661
-
Principles of Fourier transform ion cyclotron resonance mass spectrometry and its application in structural biology
-
DOI 10.1039/b403880k
-
Barrow, M.P., Burkitt, W.I., Derrick, P.J. (2005) Principles of Fourier transform ion cyclotron mass spectrometry and its application in structural biology. The Analyst 130, 18-28. (Pubitemid 40129136)
-
(2005)
Analyst
, vol.130
, Issue.1
, pp. 18-28
-
-
Barrow, M.P.1
Burkitt, W.I.2
Derrick, P.J.3
-
4
-
-
0036404889
-
Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass Spectrometry
-
Aharoni, A., De Vos, C.H.R., Verhoeven, H.A., Maliepaard, C.A., Kruppa, G., Bino, R., Goodenowe, D.B. (2002) Nontargeted Metabolome Analysis by Use of Fourier Transform Ion Cyclotron Mass Spectrometry. Omics 6, 217-234. (Pubitemid 35278415)
-
(2002)
OMICS A Journal of Integrative Biology
, vol.6
, Issue.3
, pp. 217-234
-
-
Aharoni, A.1
De Vos, C.H.R.2
Verhoeven, H.A.3
Maliepaard, C.A.4
Kruppa, G.5
Bino, R.6
Goodenowe, D.B.7
-
5
-
-
40649103950
-
Rice blast infection of Brachypodium distachyon as a model system to study dynamic host/pathogen interactions
-
DOI 10.1038/nprot.2007.499, PII NPROT.2007.499
-
Parker, D., Beckmann, M., Enot, D.P., Overy, D.P., Caracuel Rios, Z., Gilbert, M., Talbot, N., Draper, D. (2008) Rice blast infection of Brachypodium distachyon as a model system to study dynamic host pathogen interactions. Naure. Prot. 3, 435-445. (Pubitemid 351372233)
-
(2008)
Nature Protocols
, vol.3
, Issue.3
, pp. 435-445
-
-
Parker, D.1
Beckmann, M.2
Enot, D.P.3
Overy, D.P.4
Rios, Z.C.5
Gilbert, M.6
Talbot, N.7
Draper, J.8
-
6
-
-
33645673600
-
Metabolomic approaches reveal that phosphatidic and phosphatidyl glycerol phospholipids are major discriminatory non-polar metabolites in responses by Brachypodium distachyon to challenge by Magnaporthe grisea
-
Allwood, J.W., Ellis, D.I., Heald, J.K., Goodacre, R., Mur, L.A.J. (2006) Metabolomic approaches reveal that phosphatidic and phosphatidyl glycerol phospholipids are major discriminatory non-polar metabolites in responses by Brachypodium distachyon to challenge by Magnaporthe grisea. The Plant J 46, 351-368.
-
(2006)
The Plant J
, vol.46
, pp. 351-368
-
-
Allwood, J.W.1
Ellis, D.I.2
Heald, J.K.3
Goodacre, R.4
Mur, L.A.J.5
-
7
-
-
66149192291
-
High-resolution extracted ion chromatography, a new tool for metabolomics and lipidomics using a second-generation orbitrap mass spectrometer
-
Koulman, A., Woffendin, G., Narayana, V.K., Welchman, H., Crone, C., Volmer, D.A. (2009) High-resolution extracted ion chromatography, a new tool for metabolomics and lipidomics using a second-generation orbitrap mass spectrometer. Rapid Communications in Mass Spectr. 23, 1411-1418.
-
(2009)
Rapid Communications in Mass Spectr.
, vol.23
, pp. 1411-1418
-
-
Koulman, A.1
Woffendin, G.2
Narayana, V.K.3
Welchman, H.4
Crone, C.5
Volmer, D.A.6
-
8
-
-
3042750616
-
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
-
DOI 10.1073/pnas.0403218101
-
Hirai, M.Y., Yano, M., Goodenowe, D.B., Kanaya, S., Kimura, T., Awazuhara, M., Arita, M., Fujiwara, T., Saito, K. (2004) Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. PNAS USA 101, 10205-10210. (Pubitemid 38891220)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.27
, pp. 10205-10210
-
-
Hirai, M.Y.1
Yano, M.2
Goodenowe, D.B.3
Kanaya, S.4
Kimura, T.5
Awazuhara, M.6
Arita, M.7
Fujiwara, T.8
Saito, K.9
-
9
-
-
36849069482
-
Differential metabolomics unraveling light/dark regulation of metabolic activities in Arabidopsis cell culture
-
DOI 10.1007/s00425-007-0594-z
-
Nakamura, Y., Kimura, A., Saga, H., Oikawa, A., Shinbo, Y., Kai, K., Sakurai, N., Suzuki, H., Kitayama, M., Shibata, D., Kanaya, S., Ohta, D. (2007) Differential metabolomics unravelling light/dark regulation of metabolic activities in Arabidopsis cell cultures. Planta 227, 57-66. (Pubitemid 350222824)
-
(2007)
Planta
, vol.227
, Issue.1
, pp. 57-66
-
-
Nakamura, Y.1
Kimura, A.2
Saga, H.3
Oikawa, A.4
Shinbo, Y.5
Kai, K.6
Sakurai, N.7
Suzuki, H.8
Kitayama, M.9
Shibata, D.10
Kanaya, S.11
Ohta, D.12
-
10
-
-
35648961364
-
Metabolic profiling using Fourier-transform ion-cyclotron-resonance mass spectrometry
-
DOI 10.1007/s00216-007-1650-z, Ultrahigh Resolution Mass Spectrometry
-
Ohta, D., Shibata, D., Kanaya, S. (2007) Metabolic profi ling using Fourier-transform ion-cyclotron-resonance mass spectrometry. Anal. Bioanal. Chem. 389, 1469-1475. (Pubitemid 350023671)
-
(2007)
Analytical and Bioanalytical Chemistry
, vol.389
, Issue.5
, pp. 1469-1475
-
-
Ohta, D.1
Shibata, D.2
Kanaya, S.3
-
11
-
-
40649109368
-
Preprocessing, classification modeling and feature selection using flow injection electrospray mass spectrometry metabolite fingerprint data
-
DOI 10.1038/nprot.2007.511, PII NPROT.2007.511
-
Enot, D.P., Lin, W., Beckmann, M., Parker, D., Overy, D.P., Draper, J. (2008) Preprocessing, classifi cation modelling and feature selection using fl ow injection electrospray mass spectrometry metabolite fi ngerprint data. Nature Prot. 3, 446-470. (Pubitemid 351384257)
-
(2008)
Nature Protocols
, vol.3
, Issue.3
, pp. 446-470
-
-
Enot, D.P.1
Lin, W.2
Beckmann, M.3
Parker, D.4
Overy, D.P.5
Draper, J.6
-
12
-
-
68949163674
-
Metabolite signal identifi cation in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'
-
Draper, J., Enot, D.P., Parker, D., Beckmann, M., Snowdon, S., Lin, W., Zubair, H. (2009) Metabolite signal identifi cation in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'. BMC Bioinformatics 10, 227.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 227
-
-
Draper, J.1
Enot, D.P.2
Parker, D.3
Beckmann, M.4
Snowdon, S.5
Lin, W.6
Zubair, H.7
-
13
-
-
34247163207
-
Seven Golden Rules for heuristic fi ltering of molecular formulas obtained by accurate mass spectrometry
-
Kind, T. and Fiehn, O. (2007) Seven Golden Rules for heuristic fi ltering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinformatics 8, 105.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 105
-
-
Kind, T.1
Fiehn, O.2
-
14
-
-
34748837228
-
Detecting a difference - Assessing generalisability when modelling metabolome fingerprint data in longer term studies of genetically modified plants
-
DOI 10.1007/s11306-007-0064-4
-
Enot, D.P., Beckmann, M., Draper, J. (2007) Detecting a difference-assessing generalisability when modelling metabolome fi ngerprint data in longer term studies of genetically modifi ed plants. Metabolomics 3, 335-347. (Pubitemid 47484721)
-
(2007)
Metabolomics
, vol.3
, Issue.3
, pp. 335-347
-
-
Enot, D.P.1
Beckmann, M.2
Draper, J.3
-
15
-
-
0003946510
-
-
Jolliffe. Springer-Verlag, New York
-
Jolliffe (1986) Principle Components Analysis. Springer-Verlag, New York.
-
(1986)
Principle Components Analysis
-
-
-
16
-
-
33846055395
-
Metabolomics of a superorganism
-
S-266 S
-
Goodacre, R. (2007) Metabolomics of a superorganism. J. Nutrition 137, 259 S-266 S.
-
(2007)
J. Nutrition
, vol.137
, pp. 259
-
-
Goodacre, R.1
-
17
-
-
1942470073
-
Metabolomics by numbers: Acquiring and understanding global metabolite data
-
DOI 10.1016/j.tibtech.2004.03.007, PII S0167779904000812
-
Goodacre, R. Vaidyanathan, S., Dunn, W.B., Harrigan, G.G., Kell, D.B. (2004) Metabolomics by numbers-acquiring and understanding global metabolite data. Trends Biotech. 22, 245-252. (Pubitemid 38515742)
-
(2004)
Trends in Biotechnology
, vol.22
, Issue.5
, pp. 245-252
-
-
Goodacre, R.1
Vaidyanathan, S.2
Dunn, W.B.3
Harrigan, G.G.4
Kell, D.B.5
-
18
-
-
33749535056
-
Predicting interpretability of metabolome models based on behavior, putative identity, and biological relevance of explanatory signals
-
DOI 10.1073/pnas.0605152103
-
Enot, D.P., Beckmann, M., Overy, D., Draper, J. (2006) Predicting interpretability of metabolome models based on behavior, putative identity, and biological relevance of explanatory signals. PNAS USA 103, 14865-14870. (Pubitemid 44527820)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.40
, pp. 14865-14870
-
-
Enot, D.P.1
Beckmann, M.2
Overy, D.3
Draper, J.4
-
19
-
-
34748881925
-
Statistical measures for validating plant genotype similarity assessments following multivariate analysis of metabolome fingerprint data
-
DOI 10.1007/s11306-007-0066-2
-
Enot, D.P. and Draper, J. (2007) Statistical measures for validating plant genotype similarity assessments following multivariate analysis of metabolome fi ngerprint data. Metabolomics 3, 349-355. (Pubitemid 47470702)
-
(2007)
Metabolomics
, vol.3
, Issue.3
, pp. 349-355
-
-
Enot, D.P.1
Draper, J.2
-
20
-
-
0037370292
-
Chemometric discrimination of unfractionated plant extracts analyzed by electrospray mass spectrometry
-
DOI 10.1016/S0031-9422(02)00718-5
-
Goodacre, R., York, E.V., Heald, J.K., Scott, I.M. (2003) Chemometric discrimination of unfractionated plant extracts profi led by fl owinjection electrospray mass spectrometry. Phytochem. 62, 859-863. (Pubitemid 36262389)
-
(2003)
Phytochemistry
, vol.62
, Issue.6
, pp. 859-863
-
-
Goodacre, R.1
York, E.V.2
Heald, J.K.3
Scott, I.M.4
-
21
-
-
0037371953
-
Metabolic fi ngerprinting in salt-stressed tomatoes
-
Johnson, H.E., Broadhurst, D., Goodacre, R., Smith, A.R. (2003) Metabolic fi ngerprinting in salt-stressed tomatoes. Phytochem. 62, 919-928.
-
(2003)
Phytochem.
, vol.62
, pp. 919-928
-
-
Johnson, H.E.1
Broadhurst, D.2
Goodacre, R.3
Smith, A.R.4
-
22
-
-
67649834742
-
Mass spectrometry tools and metabolite-specifi c databases for molecular identifi cation in metabolomics
-
Brown, M., Dunn, W.B., Dobson, P., Patel, Y., Winder, C.L., Francis-McIntyre, S., Begley, P., Carroll, K., Broadhurst, D., Tseng, A., Swainston, N., Spasic, I., Goodacre, R., Kell, D.B. (2009) Mass spectrometry tools and metabolite-specifi c databases for molecular identifi cation in metabolomics. The Analyst 134, 1322-1332.
-
(2009)
The Analyst
, vol.134
, pp. 1322-1332
-
-
Brown, M.1
Dunn, W.B.2
Dobson, P.3
Patel, Y.4
Winder, C.L.5
Francis-Mcintyre, S.6
Begley, P.7
Carroll, K.8
Broadhurst, D.9
Tseng, A.10
Swainston, N.11
Spasic, I.12
Goodacre, R.13
Kell, D.B.14
-
23
-
-
40649117247
-
Explanatory signal interpretation and metabolite identification strategies for nominal mass FIE-MS metabolite fingerprints
-
DOI 10.1038/nprot.2007.512, PII NPROT.2007.512
-
Overy, D.P., Enot, D.P., Tailliart, K., Jenkins, H., Parker, D., Beckmann, M., Draper, J. (2008) Explanatory signal interpretation and metabolite identifi cation strategies for nominal mass FIE-MS metabolite fi ngerprints. Nature Prot. 3, 471-485. (Pubitemid 351372234)
-
(2008)
Nature Protocols
, vol.3
, Issue.3
, pp. 471-485
-
-
Overy, D.P.1
Enot, D.P.2
Tailliart, K.3
Jenkins, H.4
Parker, D.5
Beckmann, M.6
Draper, J.7
-
24
-
-
14744271540
-
Activation of large ions in FT-ICR mass spectrometry
-
DOI 10.1002/mas.20012
-
Laskin, J. and Futrell, J.H. (2005) Activation of large ions in FT-ICR mass spectrometry. Mass Spec. Rev. 24, 135-167. (Pubitemid 40325547)
-
(2005)
Mass Spectrometry Reviews
, vol.24
, Issue.2
, pp. 135-167
-
-
Laskin, J.1
Futrell, J.H.2
-
25
-
-
40649099178
-
High-throughput, nontargeted metabolite fingerprinting using nominal mass flow injection electrospray mass spectrometry
-
DOI 10.1038/nprot.2007.500, PII NPROT.2007.500
-
Beckmann, M., Parker, D., Enot, D.P., Duval, E., Draper, J. (2008) High-throughput metabolome fi ngerprinting using Flow Injection Electrospray Mass Spectrometry. Nature Prot. 3, 486-504. (Pubitemid 351384258)
-
(2008)
Nature Protocols
, vol.3
, Issue.3
, pp. 486-504
-
-
Beckmann, M.1
Parker, D.2
Enot, D.P.3
Duval, E.4
Draper, J.5
-
26
-
-
0033757963
-
Metabolite profi ling for plant functional genomics
-
Fiehn, O., Kopka, J., Dormann, P., Altmann, T., Trethewey, R.N., Willmitzer, L. (2000) Metabolite profi ling for plant functional genomics. Nat. Biotechnol. 18, 1157-1161.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1157-1161
-
-
Fiehn, O.1
Kopka, J.2
Dormann, P.3
Altmann, T.4
Trethewey, R.N.5
Willmitzer, L.6
-
27
-
-
34248580879
-
Gas chromatography mass spectrometry-based metabolite profi ling in plants
-
Lisec, J., Schauer, N., Kopka, J., Willmitzer, L., Fernie, A.R. (2006) Gas chromatography mass spectrometry-based metabolite profi ling in plants. Nature Prot. 1, 387-396.
-
(2006)
Nature Prot.
, vol.1
, pp. 387-396
-
-
Lisec, J.1
Schauer, N.2
Kopka, J.3
Willmitzer, L.4
Fernie, A.R.5
-
28
-
-
65249164096
-
1 H-NMR, GC-EI-TOF-MS, and data set correlation for fruit metabolomics, application to melon
-
Biais, B. and Allwood, J.W., Deborde, C., Xu, Y., Maucourt, M., Beauvoit, B., Dunn, W.B., Jacob, D., Goodacre, R., Rolin, D., Moing, A. (2009) 1 H-NMR, GC-EI-TOF-MS, and data set correlation for fruit metabolomics, application to melon. Anal. Chem. 81, 2884-2894.
-
(2009)
Anal. Chem.
, vol.81
, pp. 2884-2894
-
-
Biais, B.1
Allwood, J.W.2
Deborde, C.3
Xu, Y.4
Maucourt, M.5
Beauvoit, B.6
Dunn, W.B.7
Jacob, D.8
Goodacre, R.9
Rolin, D.10
Moing, A.11
-
29
-
-
74449088783
-
Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of fl ight mass spectrometry (GC-EI-TOFMS) based plant metabolomics
-
Allwood, J.W. and Erban, A., de Koning, S., Dunn, W.B., Luedemann, A., Lommen, A., Kay, L., Löscher, R., Kopka, J., Goodacre, R. (2009) Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of fl ight mass spectrometry (GC-EI-TOFMS) based plant metabolomics. Metabolomics 5, 479-496.
-
(2009)
Metabolomics
, vol.5
, pp. 479-496
-
-
Allwood, J.W.1
Erban, A.2
De Koning, S.3
Dunn, W.B.4
Luedemann, A.5
Lommen, A.6
Kay, L.7
Löscher, R.8
Kopka, J.9
Goodacre, R.10
-
30
-
-
33846240326
-
Statistical strategies for avoiding false discoveries in metabolomics and related experiments
-
DOI 10.1007/s11306-006-0037-z
-
Broadhurst, D.I. and Kell, D.B. (2006) Statistical strategies for avoiding false discoveries in metabolomics and related experiments. Metabolomics 2, 171-196. (Pubitemid 46099798)
-
(2006)
Metabolomics
, vol.2
, Issue.4
, pp. 171-196
-
-
Broadhurst, D.I.1
Kell, D.B.2
-
31
-
-
61849120270
-
A new approach to toxicity testing in Daphnia magna : Application of high throughput FT-ICR mass spectrometry metabolomics
-
Taylor, N.S., Weber, R.J.M., Southam, A.D., Payne, T.G., Hrydziuszko, O., Arvanitis, T.N., Viant, M.R. (2009) A new approach to toxicity testing in Daphnia magna : application of high throughput FT-ICR mass spectrometry metabolomics. Metabolomics 5, 44-58.
-
(2009)
Metabolomics
, vol.5
, pp. 44-58
-
-
Taylor, N.S.1
Weber, R.J.M.2
Southam, A.D.3
Payne, T.G.4
Hrydziuszko, O.5
Arvanitis, T.N.6
Viant, M.R.7
-
32
-
-
34347229424
-
Dynamic range and mass accuracy of wide-scan direct infusion nanoelectrospray fourier transform ion cyclotron resonance mass spectrometry-based metabolomics increased by the spectral stitching method
-
DOI 10.1021/ac062446p
-
Southam, A.D., Payne, T.G., Cooper, H.J., Arvanitis, T.N., Viant, M.R. (2007) Dynamic Range and Mass Accuracy of Wide-Scan Direct Infusion Nanoelectrospray Fourier Transform Ion Cyclotron Resonance Mass Spectrometry- Based Metabolomics Increased by the Spectral Stitching Method. Anal. Chem. 79, 4595-4602. (Pubitemid 46999576)
-
(2007)
Analytical Chemistry
, vol.79
, Issue.12
, pp. 4595-4602
-
-
Southam, A.D.1
Payne, T.G.2
Cooper, H.J.3
Arvanitis, T.N.4
Viant, M.R.5
-
33
-
-
65549121144
-
A Signal Filtering Method for Improved Quantifi cation and Noise Discrimination in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry-Based Metabolomics Data
-
Payne, T.G., Southam, A.D., Arvanitis, T.N., Viant, M.R. (2009) A Signal Filtering Method for Improved Quantifi cation and Noise Discrimination in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry-Based Metabolomics Data. JASMS 20, 1087-1095.
-
(2009)
JASMS
, vol.20
, pp. 1087-1095
-
-
Payne, T.G.1
Southam, A.D.2
Arvanitis, T.N.3
Viant, M.R.4
-
34
-
-
34249311629
-
Representation, comparison, and interpretation of metabolome fingerprint data for total composition analysis and quality trait investigation in potato cultivars
-
DOI 10.1021/jf0701842
-
Beckmann, M., Enot, D.P., Overy, D.P., Draper, J. (2007) Representation, comparison, and interpretation of metabolome fi ngerprint data for total composition analysis and quality trait investigation in potato cultivars. J. Ag. Food Chem. 55, 3444-3451. (Pubitemid 46806560)
-
(2007)
Journal of Agricultural and Food Chemistry
, vol.55
, Issue.9
, pp. 3444-3451
-
-
Beckmann, M.1
Enot, D.P.2
Overy, D.P.3
Draper, J.4
-
35
-
-
33750967021
-
Precision mapping of the metabolome
-
DOI 10.1016/j.tibtech.2006.10.006, PII S0167779906002642
-
Breitling, R., Pitt, A.R., Barrett, M.P. (2006) Precision mapping of the metabolome. Trends Biotech. 24, 543-548. (Pubitemid 44751219)
-
(2006)
Trends in Biotechnology
, vol.24
, Issue.12
, pp. 543-548
-
-
Breitling, R.1
Pitt, A.R.2
Barrett, M.P.3
|