Ecological and historical drivers of diversification in the fly genus Chiastocheta Pokorny

Molecular Phylogenetics and Evolution

Volumn 63, Issue 2, 2012, Pages 466-474

  Espíndola, Anahí ^a   Buerki, Sven ^b   Alvarez, Nadir ^c  

^a UNIVERSITY OF NEUCHÂTEL   (Switzerland)

^b JODRELL LABORATORY   (United Kingdom)

^c UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

Biogeography; Chiastocheta; Diversification; Phylogeny; Temporal inference; Trollius

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BIODIVERSITY; CLASSIFICATION; CLIMATE; DNA SEQUENCE; FLY; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; MITOCHONDRION; MOLECULAR EVOLUTION; PHYLOGENY; PLANT; SPECIES DIFFERENTIATION;

ANIMALS; BIODIVERSITY; CLIMATE; DIPTERA; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENETIC SPECIATION; GENETIC VARIATION; GEOGRAPHY; MITOCHONDRIA; PHYLOGENY; PLANTS; SEQUENCE ANALYSIS, DNA;

CHIASTOCHETA; HEXAPODA; TROLLIUS;

EID: 84858076219     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.01.018     Document Type: Article

References (53)

1. Aizen M.A., Ezcurra C. High incidence of plant-animal mutualisms in the woody flora of the temperate forest of southern South America: biogeographical origin and present ecological significance. Ecol. Austral 1998, 8:217-236.
2. Akaike, H., 1973. Information theory and an extension of the maximum likelihood principle. In: Second International Symposium on Information Theory, Kiado, A., Budapest, pp. 267-281.
3. Borer M., Alvarez N., Buerki S., Margraf N., Rahier M., Naisbit R.E. The phylogeography of an alpine leaf beetle: divergence within Oreina elongata spans several ice ages. Mol. Phylogen. Evol. 2010, 57(2):703-709.
4. Brochmann C., Gabrielsen T.M., Nordal I., Landvik J.Y., Elven R. Glacial survival or tabula rasa? The history of North Atlantic biota revisited. Taxon 2003, 52:417-450.
5. Brower A.V.Z. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proc. Natl. Acad. Sci. USA 1994, 91:6491-6495.
6. Buerki S., Forest F., Alvarez N., Nylander J.A.A., Arrigo N., Sanmartín I. An evaluation of new parsimony-based versus parametric inference methods in biogeography: a case study using the globally distributed plant family Sapindaceae. J. Biogeogr. 2011, 38(3):531-550.
7. Collin J.E. The genus Chiastocheta Pokorny (Diptera: Anthomyiidae). Proc. R. Entomol. Soc. London (B) 1954, 23:95-102.
8. Cruaud A., Cook J., Da-Rong Y., Genson G., Jabbour-Zahab R., Kjellberg F., Pereira R.A.S., Rønsted N., Santos-Mattos O., Savolainen V., Ubaidillah R., van Noort S., Yan-Qiong P., Rasplus J.Y. Fig-fig wasp mutualism: the fall of the strict cospeciation paradigm. Evolution of Plant-Pollinator Interactions 2011, 68-102. Cambridge University Press, London, UK. S. Patiny (Ed.).
9. Després L., Jaeger N. Evolution of oviposition strategies and speciation in the globeflower flies Chiastocheta spp. (Anthomyiidae). J. Evol. Biol. 1999, 12:822-831.
10. Després L., Pettex E., Plaisance V., Pompanon F. Speciation in the globeflower fly Chiastocheta spp. (Diptera: Anthomyiidae) in relation to host plant species, biogeography, and morphology. Mol. Phylogen. Evol. 2002, 22(2):258-268.
11. Després L., Gielly L., Redoutet W., Taberlet P. Using AFLP to resolve phylogenetic relationships in a morphologically diversified plant species complex when nuclear and chloroplast sequences fail to reveal variability. Mol. Phylogen. Evol. 2003, 27(2):185-196.
12. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
13. Drummond A.J., Ho S.Y.W., Phillips M.J., Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006, 4(5):e88.
14. Ehlers J., Gibbard P.L. Quaternary glaciations: extent and chronology. Developments in Quaternary Science 2004, Elsevier, Amsterdam, San Diego.
15. Espíndola A., Buerki S., Küpfer P., Bedalov M., Alvarez N. New insights into the phylogeny and biogeography of Arum L. (Araceae): unravelling its evolutionary history. Bot. J. Linn. Soc. 2010, 163:14-32.
16. Funk D.J. Molecular systematics of cytochrome oxidase I and 16S from Neochlamisus leaf beetles and the importance of sampling. Mol. Biol. Evol. 1999, 16(1):67-82.
17. Gallet C., Ibanez S., Zinger L., Taravel F.R., Trierweiler M., Jeacomine I., Després L. Plant chemical defense induced by a seed-eating pollinator mutualist. J. Chem. Ecol. 2007, 33(11):2078-2089.
18. Gelman A., Rubin D.B. Inference from iterative simulation using multiple sequences. Stat. Sci. 1992, 7:457-472.
19. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
20. Hennig, W. (Ed.), 1976. Anthomyiidae. Die Fliegen der Palaearktischen Region. Stuttgart, E. Schweizerbart.
21. Kameda Y., Kato M. Terrestrial invasion of pomatiopsid gastropods in the heavy-snow region of the Japanese Archipelago. BMC Evol. Biol. 2011, 11:118.
22. Margulis L. Origin of Eukaryotic Cells 1970, Yale University Press, New Haven, Connecticut, USA.
23. Michelsen V. A revision of the Anthomyiidae (Diptera) described by J.W. Zetterstedt. Steenstrupia 1985, 11(2):37-65.
24. Nakada M., Yonekura N., Lambeck K. Late Pleistocene and Holocene sea-level changes in Japan: implications for tectonic histories and mantle rheology. Palaeogeogr. Palaeoclimatol. Palaeoecol. 1991, 85:107-122.
25. Nylander, J.A.A., 2004. Mraic.pl. Uppsala, Sweden, Distributed by the Author.
26. Papadopoulou A., Anastasiou I., Vogler A.P. Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration. Mol. Biol. Evol. 2010, 27(7):1659-1672.
27. Paradis E., Claude J., Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004, 20:289-290.
28. Pellmyr O. The cost of mutualism - interactions between Trollius europaeus and its pollinating parasites. Oecologia 1989, 78(1):53-59.
29. Pellmyr O. The phylogeny of a mutualism: evolution and coadaptation between Trollius and its seed-parasitic pollinators. Biol. J. Linn. Soc. 1992, 47:337-365.
30. Pellmyr O. Yuccas, Yucca moths, and coevolution: a review. Ann. Missouri Botan. Garden 2003, 90(1):35-55.
31. Pellmyr O., Huth C.J. Evolutionary stability of mutualism between yuccas and yucca moths. Nature 1994, 372:257-260.
32. Pompanon F., Pettex E., Després L. Patterns of resource exploitation in four coexisting globeflower fly species (Chiastocheta sp.). Acta Oecol. 2006, 29(2):233-240.
33. R Development Core Team, 2012. R: A Language and Environment for Statistical Computing.
34. Rambaut, A., Drummond, A.J., 2004. Tracer v1.4. Edinburgh.
35. Ree R.H., Sanmartín I. Prospects and challenges for parametric models in historical biogeographical inference. J. Biogeogr. 2009, 36:1211-1220.
36. Ree R.H., Smith S.A. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 2008, 57:4-14.
37. Ree R.H., Moore B.R., Webb C.O., Donoghue M.J. A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution 2005, 59:2299-2311.
38. Ronquist F. Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. Syst. Biol. 1997, 46:195-203.
39. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19(12):1572-1574.
40. Sanmartín I., Ronquist F. Southern hemisphere biogeography inferred by event-based models: plant versus animal patterns. Syst. Biol. 2004, 53(2):216-243.
41. Shanahan M., So S., Compton S.G., Corlett R. Fig-eating by vertebrate frugivores: a global review. Biol. Rev. Camb. Philos. Soc. 2001, 76(4):529-572.
42. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22(21):2688-2690.
43. Stewart J.R., Lister A.M., Barnes I., Dalén L. Refugia revisited: individualistic responses of species in space and time. Proc. R. Soc. B 2010, 277:661-671.
44. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
45. Thompson J.N. The coevolving web of life. Am. Nat. 2009, 173(2):125-140.
46. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22(22):4673-4680.
47. Triponez Y., Buerki S., Borer M., Naisbit R.E., Rahier M., Alvarez N. Discordances between phylogenetic and morphological patterns in alpine leaf beetles attest to an intricate biogeographic history of lineages in postglacial Europe. Mol. Ecol. 2011, 20(11):2442-2463.
48. Wahlberg N. That awkward age for butterflies: insights from the age of the butterfly subfamily Nymphalinae (Lepidoptera: Nymphalidae). Syst. Biol. 2006, 55:703-714.
49. Walker J.D., Geissman J.W. Geologic Time Scale: Geological Society of America 2009, The Geological Society of America.
50. Wiebes J.T. Co-evolution of figs and their insect pollinators. Annu. Rev. Ecol. Syst. 1979, 10:1-10.
51. Xia X., Xie Z. DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 2001, 92(4):371-373.
52. Zachos J., Pagani M., Sloan L., Thomas E., Billups K. Trends, rhythms, and aberrations in global climate 65Ma to present. Science 2001, 292(5517):686-693.
53. Zakharov E.V., Caterino M.S., Sperling F.A.H. Molecular phylogeny, historical biogeography, and divergence time estimates for swallowtail butterflies of the genus Papilio (Lepidoptera: Papilionidae). Syst. Biol. 2004, 53(2):193-215.