-
1
-
-
77954489376
-
Manipulation of FASTQ data with Galaxy
-
Blankenberg,D. et al. (2010) Manipulation of FASTQ data with Galaxy. Bioinformatics, 26, 1783-1785.
-
(2010)
Bioinformatics
, vol.26
, pp. 1783-1785
-
-
Blankenberg, D.1
-
2
-
-
77951226627
-
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
-
Cock, P.J.A., Fields, C.J., et al. (2010). The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res., 38, 1767-1771.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 1767-1771
-
-
Cock, P.J.A.1
Fields, C.J.2
-
3
-
-
77957765256
-
Data structures and compression algorithms for high-throughput sequencing technologies
-
Daily,K. et al. (2010) Data structures and compression algorithms for high-throughput sequencing technologies. BMC Bioinformatics, 11, 514.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 514
-
-
Daily, K.1
-
4
-
-
79952580139
-
Compression of genomic sequences in FASTQ format
-
Deorowicz,S. and Grabowski,S. (2011) Compression of genomic sequences in FASTQ format. Bioinformatics, 27, 860-862.
-
(2011)
Bioinformatics
, vol.27
, pp. 860-862
-
-
Deorowicz, S.1
Grabowski, S.2
-
5
-
-
0031978181
-
Base-calling of automated sequencer traces using Phred. II. error probabilities
-
Ewing,B. and Green,P. (1998) Base-calling of automated sequencer traces using Phred. II. error probabilities. Genome Res., 8, 186-194.
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
6
-
-
0016485796
-
Optimal source codes for geometrically distributed integer alphabets
-
Gallager,R. and van Voorhis,D. (1975) Optimal source codes for geometrically distributed integer alphabets. IEEE Trans. Informat. Theory, 21, 228-230.
-
(1975)
IEEE Trans. Informat. Theory
, vol.21
, pp. 228-230
-
-
Gallager, R.1
van Voorhis, D.2
-
7
-
-
67649170975
-
Textual data compression in computational biology: a synopsis
-
Giancarlo,R. et al. (2009) Textual data compression in computational biology: a synopsis. Bioinformatics, 25, 1575-1586.
-
(2009)
Bioinformatics
, vol.25
, pp. 1575-1586
-
-
Giancarlo, R.1
-
9
-
-
79955554401
-
Efficient storage of high throughput DNA sequencing data using reference-based compression
-
Hsi-Yang Fritz,M. et al. (2011) Efficient storage of high throughput DNA sequencing data using reference-based compression. Genome Res., 21, 734-740.
-
(2011)
Genome Res
, vol.21
, pp. 734-740
-
-
Hsi-Yang Fritz, M.1
-
10
-
-
84938015047
-
A method for the construction of minimum-redundancy codes
-
Huffman,D.A. (1952) A method for the construction of minimum-redundancy codes. Proc. Inst. Radio Eng., 40, 1098-1101.
-
(1952)
Proc. Inst. Radio Eng.
, vol.40
, pp. 1098-1101
-
-
Huffman, D.A.1
-
11
-
-
79952410480
-
Compressing genomic sequence fragments using SlimGene
-
Kozanitis,C. et al. (2011) Compressing genomic sequence fragments using SlimGene. J. Comput. Biol., 18, 401-413.
-
(2011)
J. Comput. Biol.
, vol.18
, pp. 401-413
-
-
Kozanitis, C.1
-
12
-
-
78651301328
-
The Sequence Read Archive
-
Leinonen,R. et al. (2011) The Sequence Read Archive. Nucleic Acids Res., 39, D19-D21.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Leinonen, R.1
-
13
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li,H. et al. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
-
(2008)
Genome Res
, vol.18
, pp. 1851-1858
-
-
Li, H.1
-
14
-
-
0004990868
-
Binary interpolative coding for effective index compression
-
Moffat,A. and Stuiver,L. (2000) Binary interpolative coding for effective index compression. Inform. Retr., 3, 25-47.
-
(2000)
Inform. Retr.
, vol.3
, pp. 25-47
-
-
Moffat, A.1
Stuiver, L.2
-
15
-
-
0012850969
-
-
Kluwer Academic Publishers, Norwell, MA, USA
-
Moffat,A. and Turpin,A. (2002) Compression and Coding Algorithms. Kluwer Academic Publishers, Norwell, MA, USA.
-
(2002)
Compression and Coding Algorithms
-
-
Moffat, A.1
Turpin, A.2
-
16
-
-
0004132830
-
Some practical universal noiseless coding techniques
-
Jet Propulsion Laboratory, Pasadena, California
-
Rice,R.F. (1979) Some practical universal noiseless coding techniques. Technical Report 79-22, Jet Propulsion Laboratory, Pasadena, California.
-
(1979)
Technical Report 79-22
-
-
Rice, R.F.1
-
17
-
-
77955886068
-
G-SQZ: compact encoding of genomic sequence and quality data
-
Tembe,W. et al. (2010) G-SQZ: compact encoding of genomic sequence and quality data. Bioinformatics, 26, 2192-2194.
-
(2010)
Bioinformatics
, vol.26
, pp. 2192-2194
-
-
Tembe, W.1
-
19
-
-
0028342280
-
Semantic and generative models for lossy text compression
-
Witten,I.H. et al. (1994). Semantic and generative models for lossy text compression. Comput. J., 37, 83-87.
-
(1994)
Comput. J.
, vol.37
, pp. 83-87
-
-
Witten, I.H.1
-
20
-
-
0017493286
-
A universal algorithm for sequential data compression
-
Ziv,J. and Lempel,A. (1977) A universal algorithm for sequential data compression. IEEE Trans. Inform. Theory, 23, 337-343.
-
(1977)
IEEE Trans. Inform. Theory
, vol.23
, pp. 337-343
-
-
Ziv, J.1
Lempel, A.2
|