메뉴 건너뛰기




Volumn 7, Issue 3, 2012, Pages

Function-based discovery of significant transcriptional temporal patterns in insulin stimulated muscle cells

Author keywords

[No Author keywords available]

Indexed keywords

INSULIN; GLUCOSE;

EID: 84857746637     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0032391     Document Type: Article
Times cited : (10)

References (38)
  • 1
    • 0025098765 scopus 로고
    • Quantitation of muscle glycogen synthesis in normal subjects and subjects with non-insulin-dependent diabetes by 13C nuclear magnetic resonance spectroscopy
    • Shulman GI, Rothman DL, Jue T, Stein P, DeFronzo RA, et al. (1990) Quantitation of muscle glycogen synthesis in normal subjects and subjects with non-insulin-dependent diabetes by 13C nuclear magnetic resonance spectroscopy. N Engl J Med 322: 223-228.
    • (1990) N Engl J Med , vol.322 , pp. 223-228
    • Shulman, G.I.1    Rothman, D.L.2    Jue, T.3    Stein, P.4    DeFronzo, R.A.5
  • 2
    • 0023196951 scopus 로고
    • Effect of physiologic hyperinsulinemia on skeletal muscle protein synthesis and breakdown in man
    • Gelfand RA, Barrett EJ, (1987) Effect of physiologic hyperinsulinemia on skeletal muscle protein synthesis and breakdown in man. J Clin Invest 80: 1-6.
    • (1987) J Clin Invest , vol.80 , pp. 1-6
    • Gelfand, R.A.1    Barrett, E.J.2
  • 3
    • 33749249371 scopus 로고    scopus 로고
    • Mechanism of insulin's anabolic effect on muscle: measurements of muscle protein synthesis and breakdown using aminoacyl-tRNA and other surrogate measures
    • Chow LS, Albright RC, Bigelow ML, Toffolo G, Cobelli C, et al. (2006) Mechanism of insulin's anabolic effect on muscle: measurements of muscle protein synthesis and breakdown using aminoacyl-tRNA and other surrogate measures. Am J Physiol Endocrinol Metab 291: E729-736.
    • (2006) Am J Physiol Endocrinol Metab , vol.291
    • Chow, L.S.1    Albright, R.C.2    Bigelow, M.L.3    Toffolo, G.4    Cobelli, C.5
  • 4
    • 24044468429 scopus 로고    scopus 로고
    • Turning signals on and off: GLUT4 traffic in the insulin-signaling highway
    • Thong FS, Dugani CB, Klip A, (2005) Turning signals on and off: GLUT4 traffic in the insulin-signaling highway. Physiology (Bethesda) 20: 271-284.
    • (2005) Physiology (Bethesda) , vol.20 , pp. 271-284
    • Thong, F.S.1    Dugani, C.B.2    Klip, A.3
  • 5
    • 0027249346 scopus 로고
    • Insulin-stimulated GLUT4 translocation is relevant to the phosphorylation of IRS-1 and the activity of PI 3-kinase
    • Kanai F, Ito K, Todaka M, Hayashi H, Kamohara S, et al. (1993) Insulin-stimulated GLUT4 translocation is relevant to the phosphorylation of IRS-1 and the activity of PI 3-kinase. Biochem Biophys Res Commun 195: 762-768.
    • (1993) Biochem Biophys Res Commun , vol.195 , pp. 762-768
    • Kanai, F.1    Ito, K.2    Todaka, M.3    Hayashi, H.4    Kamohara, S.5
  • 6
    • 0035941297 scopus 로고    scopus 로고
    • Insulin accelerates inter-endosomal GLUT4 traffic via phosphatidylinositol 3-kinase and protein kinase B
    • Foster LJ, Li D, Randhawa V, Klip A, (2001) Insulin accelerates inter-endosomal GLUT4 traffic via phosphatidylinositol 3-kinase and protein kinase B. J Biol Chem 276: 44212-44221.
    • (2001) J Biol Chem , vol.276 , pp. 44212-44221
    • Foster, L.J.1    Li, D.2    Randhawa, V.3    Klip, A.4
  • 7
    • 0026595349 scopus 로고
    • Insulin induces the translocation of the GLUT4 from a unique intracellular organelle to the transverse tubules in rat skeletal muscle
    • Marette A, Burdett E, Douen A, Vranic M, Klip A, (1992) Insulin induces the translocation of the GLUT4 from a unique intracellular organelle to the transverse tubules in rat skeletal muscle. Diabetes 41: 1562-1569.
    • (1992) Diabetes , vol.41 , pp. 1562-1569
    • Marette, A.1    Burdett, E.2    Douen, A.3    Vranic, M.4    Klip, A.5
  • 8
    • 0028308412 scopus 로고
    • Phosphatidylinositol 3-kinase activation is required for insulin stimulation of pp70 S6 kinase, DNA synthesis and glucose transporter translocation
    • Cheatham B, Vlahos CJ, Cheatham L, Wang L, Blenis J, et al. (1994) Phosphatidylinositol 3-kinase activation is required for insulin stimulation of pp70 S6 kinase, DNA synthesis and glucose transporter translocation. Mol Cell Biol 14: 4902-4911.
    • (1994) Mol Cell Biol , vol.14 , pp. 4902-4911
    • Cheatham, B.1    Vlahos, C.J.2    Cheatham, L.3    Wang, L.4    Blenis, J.5
  • 9
    • 0029924465 scopus 로고    scopus 로고
    • Expression of a dominant-negative Ras mutant does not affect stimulation of glucose uptake and glycogen synthesis by insulin
    • Dorrestijn J, Ouwens DM, Van den Berghe N, Bos JL, Maassen JA, (1996) Expression of a dominant-negative Ras mutant does not affect stimulation of glucose uptake and glycogen synthesis by insulin. Diabetologia 39: 558-563.
    • (1996) Diabetologia , vol.39 , pp. 558-563
    • Dorrestijn, J.1    Ouwens, D.M.2    van den Berghe, N.3    Bos, J.L.4    Maassen, J.A.5
  • 10
    • 0032560521 scopus 로고    scopus 로고
    • Evidence of insulin-stimulated phosphorylation and activation of the mammalian target of rapamycin mediated by a protein kinase B signaling pathway
    • Scott PH, Brunn GJ, Kohn AD, Roth RA, Lawrence JC Jr, (1998) Evidence of insulin-stimulated phosphorylation and activation of the mammalian target of rapamycin mediated by a protein kinase B signaling pathway. Proc Natl Acad Sci U S A 95: 7772-7777.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 7772-7777
    • Scott, P.H.1    Brunn, G.J.2    Kohn, A.D.3    Roth, R.A.4    Lawrence Jr., J.C.5
  • 11
    • 0031740967 scopus 로고    scopus 로고
    • Temporal activation of p70 S6 kinase and Akt1 by insulin: PI 3-kinase-dependent and independent mechanisms
    • Somwar R, Sumitani S, Taha C, Sweeney G, Klip A, (1998) Temporal activation of p70 S6 kinase and Akt1 by insulin: PI 3-kinase-dependent and independent mechanisms. Am J Physiol 275: E618-E625.
    • (1998) Am J Physiol , vol.275
    • Somwar, R.1    Sumitani, S.2    Taha, C.3    Sweeney, G.4    Klip, A.5
  • 12
    • 18844390423 scopus 로고    scopus 로고
    • Insulin and IGF-I stimulate the formation of the eukaryotic initiation factor 4F complex and protein synthesis in C2C12 myotubes independent of availability of external amino acids
    • Shen WH, Boyle DW, Wisniowski P, Bade A, Liechty EA, (2005) Insulin and IGF-I stimulate the formation of the eukaryotic initiation factor 4F complex and protein synthesis in C2C12 myotubes independent of availability of external amino acids. J Endocrinol (2005) 185: 275-289.
    • (2005) J Endocrinol , vol.185 , Issue.2005 , pp. 275-289
    • Shen, W.H.1    Boyle, D.W.2    Wisniowski, P.3    Bade, A.4    Liechty, E.A.5
  • 13
    • 0033679673 scopus 로고    scopus 로고
    • 4EBP1 and S6K1: translational integration sites for nutritional and hormonalinformation in muscle
    • Shah OJ, Anthony JC, Kimball SR, Jefferson LS, (2000) 4EBP1 and S6K1: translational integration sites for nutritional and hormonalinformation in muscle. Am J Physiol Endocrinol Metab 279: E715-E729.
    • (2000) Am J Physiol Endocrinol Metab , vol.279
    • Shah, O.J.1    Anthony, J.C.2    Kimball, S.R.3    Jefferson, L.S.4
  • 14
    • 0031951444 scopus 로고    scopus 로고
    • Signal transduction pathways involved in the regulation of protein synthesis by insulin in L6 myoblasts
    • Kimball SR, Horetsky RL, Jefferson LS, (1998) Signal transduction pathways involved in the regulation of protein synthesis by insulin in L6 myoblasts. Am J Physiol 274: C221-C228.
    • (1998) Am J Physiol , vol.274
    • Kimball, S.R.1    Horetsky, R.L.2    Jefferson, L.S.3
  • 15
    • 0036266251 scopus 로고    scopus 로고
    • Gene expression profile in skeletal muscle of type 2 diabetes and the effect of insulin treatment
    • Sreekumar R, Halvatsiotis P, Schimke JC, Nair KS, (2002) Gene expression profile in skeletal muscle of type 2 diabetes and the effect of insulin treatment. Diabetes 51: 1913-1920.
    • (2002) Diabetes , vol.51 , pp. 1913-1920
    • Sreekumar, R.1    Halvatsiotis, P.2    Schimke, J.C.3    Nair, K.S.4
  • 16
    • 35748979445 scopus 로고    scopus 로고
    • Effect of insulin deprivation on muscle mitochondrial ATP production and gene transcript levels in type 1 diabetic subjects
    • Karakelides H, Asmann YW, Bigelow ML, Short KR, Dhatariya K, et al. (2007) Effect of insulin deprivation on muscle mitochondrial ATP production and gene transcript levels in type 1 diabetic subjects. Diabetes 56: 2683-2689.
    • (2007) Diabetes , vol.56 , pp. 2683-2689
    • Karakelides, H.1    Asmann, Y.W.2    Bigelow, M.L.3    Short, K.R.4    Dhatariya, K.5
  • 17
    • 0036435899 scopus 로고    scopus 로고
    • Microarray profiling of skeletal muscle tissues from equally obese, non-diabetic insulin-sensitive and insulin-resistant Pima Indians
    • Yang X, Pratley RE, Tokraks S, Bogardus C, Permana PA, (2002) Microarray profiling of skeletal muscle tissues from equally obese, non-diabetic insulin-sensitive and insulin-resistant Pima Indians. Diabetologia 45: 1584-1593.
    • (2002) Diabetologia , vol.45 , pp. 1584-1593
    • Yang, X.1    Pratley, R.E.2    Tokraks, S.3    Bogardus, C.4    Permana, P.A.5
  • 18
    • 0038724906 scopus 로고    scopus 로고
    • Microarray profiling of human skeletal muscle reveals that insulin regulates approximately 800 genes during a hyperinsulinemic clamp
    • Rome S, Clement K, Rabasa-Lhoret R, Loizon E, Poitou C, et al. (2003) Microarray profiling of human skeletal muscle reveals that insulin regulates approximately 800 genes during a hyperinsulinemic clamp. J Biol Chem 278: 18063-18068.
    • (2003) J Biol Chem , vol.278 , pp. 18063-18068
    • Rome, S.1    Clement, K.2    Rabasa-Lhoret, R.3    Loizon, E.4    Poitou, C.5
  • 19
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 20
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-10.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 21
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5
  • 24
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    • Alexa A, Rahnenführer J, Lengauer T, (2006) Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22: 1600-1607.
    • (2006) Bioinformatics , vol.22 , pp. 1600-1607
    • Alexa, A.1    Rahnenführer, J.2    Lengauer, T.3
  • 25
    • 4544364176 scopus 로고    scopus 로고
    • Expression profiling of insulin action in human myotubes: induction of inflammatory and pro-angiogenic pathways in relationship with glycogen synthesis and type 2 diabetes
    • Hansen L, Gaster M, Oakeley EJ, Brusgaard K, Damsgaard Nielsen EM, et al. (2004) Expression profiling of insulin action in human myotubes: induction of inflammatory and pro-angiogenic pathways in relationship with glycogen synthesis and type 2 diabetes. Biochem Biophys Res Commun 323: 685-695.
    • (2004) Biochem Biophys Res Commun , vol.323 , pp. 685-695
    • Hansen, L.1    Gaster, M.2    Oakeley, E.J.3    Brusgaard, K.4    Damsgaard Nielsen, E.M.5
  • 26
    • 36949014067 scopus 로고    scopus 로고
    • Hierarchical tree snipping: clustering guided by prior knowledge
    • Dotan-Cohen D, Melkman AA, Kasif S, (2007) Hierarchical tree snipping: clustering guided by prior knowledge. Bioinformatics 23: 3335-3342.
    • (2007) Bioinformatics , vol.23 , pp. 3335-3342
    • Dotan-Cohen, D.1    Melkman, A.A.2    Kasif, S.3
  • 27
    • 66349129690 scopus 로고    scopus 로고
    • Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules
    • Meng J, Gao SJ, Huang Y, (2009) Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules. Bioinformatics 25: 1521-1527.
    • (2009) Bioinformatics , vol.25 , pp. 1521-1527
    • Meng, J.1    Gao, S.J.2    Huang, Y.3
  • 28
    • 67549103690 scopus 로고    scopus 로고
    • Gene clustering via integrated Markov models combining individual and pairwise features
    • Vignes M, Forbes F, (2009) Gene clustering via integrated Markov models combining individual and pairwise features. IEEE/ACM Trans Comput Biol Bioinform 6: 260-270.
    • (2009) IEEE/ACM Trans Comput Biol Bioinform , vol.6 , pp. 260-270
    • Vignes, M.1    Forbes, F.2
  • 29
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, et al. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102: 15545-15550.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3    Mukherjee, S.4    Ebert, B.L.5
  • 30
    • 0035029812 scopus 로고    scopus 로고
    • Regulation by insulin of gene expression in human skeletal muscle and adipose tissue. Evidence for specific defects in type 2 diabetes
    • Ducluzeau PH, Perretti N, Laville M, Andreelli F, Vega N, et al. (2001) Regulation by insulin of gene expression in human skeletal muscle and adipose tissue. Evidence for specific defects in type 2 diabetes. Diabetes 50: 1134-1142.
    • (2001) Diabetes , vol.50 , pp. 1134-1142
    • Ducluzeau, P.H.1    Perretti, N.2    Laville, M.3    Andreelli, F.4    Vega, N.5
  • 31
    • 45549083411 scopus 로고    scopus 로고
    • Effect of acute physiological hyperinsulinemia on gene expression in human skeletal muscle in vivo
    • Coletta DK, Balas B, Chavez AO, Baig M, Abdul-Ghani M, et al. (2008) Effect of acute physiological hyperinsulinemia on gene expression in human skeletal muscle in vivo. Am J Physiol Endocrinol Metab 294: E910-917.
    • (2008) Am J Physiol Endocrinol Metab , vol.294
    • Coletta, D.K.1    Balas, B.2    Chavez, A.O.3    Baig, M.4    Abdul-Ghani, M.5
  • 32
    • 53149125147 scopus 로고    scopus 로고
    • Disassociation between the effects of amino acids and insulin on signaling, ubiquitin ligases, and protein turnover in human muscle
    • Greenhaff PL, Karagounis LG, Peirce N, Simpson EJ, Hazell M, et al. (2008) Disassociation between the effects of amino acids and insulin on signaling, ubiquitin ligases, and protein turnover in human muscle. Am J Physiol Endocrinol Metab 295: E595-604.
    • (2008) Am J Physiol Endocrinol Metab , vol.295
    • Greenhaff, P.L.1    Karagounis, L.G.2    Peirce, N.3    Simpson, E.J.4    Hazell, M.5
  • 33
    • 0028872358 scopus 로고
    • Causes of insulin resistance
    • Kahn CR, (1995) Causes of insulin resistance. Nature 373: 384-385.
    • (1995) Nature , vol.373 , pp. 384-385
    • Kahn, C.R.1
  • 34
    • 44949215822 scopus 로고    scopus 로고
    • The TSC1-TSC2 complex is required for proper activation of mTOR complex 2
    • Huang J, Dibble CC, Matsuzaki M, Manning BD, (2008) The TSC1-TSC2 complex is required for proper activation of mTOR complex 2. Mol Cell Biol 28: 4104-4115.
    • (2008) Mol Cell Biol , vol.28 , pp. 4104-4115
    • Huang, J.1    Dibble, C.C.2    Matsuzaki, M.3    Manning, B.D.4
  • 35
    • 44449161481 scopus 로고    scopus 로고
    • The TSC1-TSC2 complex: a molecular switchboard controlling cell growth
    • Huang J, Manning BD, (2008) The TSC1-TSC2 complex: a molecular switchboard controlling cell growth. Biochem J 412: 179-190.
    • (2008) Biochem J , vol.412 , pp. 179-190
    • Huang, J.1    Manning, B.D.2
  • 36
    • 0036712905 scopus 로고    scopus 로고
    • Tsc tumour suppressor proteins antagonize amino-acid-TOR signalling
    • Gao X, Zhang Y, Arrazola P, Hino O, Kobayashi T, (2002) Tsc tumour suppressor proteins antagonize amino-acid-TOR signalling. Nat Cell Biol 4: 699-704.
    • (2002) Nat Cell Biol , vol.4 , pp. 699-704
    • Gao, X.1    Zhang, Y.2    Arrazola, P.3    Hino, O.4    Kobayashi, T.5
  • 37
    • 55649092252 scopus 로고    scopus 로고
    • Rheb activates protein synthesis and growth in adult rat ventricular cardiomyocytes
    • Wang Y, Huang BP, Luciani DS, Wang X, Johnson JD, et al. (2008) Rheb activates protein synthesis and growth in adult rat ventricular cardiomyocytes. J Mol Cell Cardiol 45: 812-820.
    • (2008) J Mol Cell Cardiol , vol.45 , pp. 812-820
    • Wang, Y.1    Huang, B.P.2    Luciani, D.S.3    Wang, X.4    Johnson, J.D.5
  • 38
    • 0038660039 scopus 로고    scopus 로고
    • Differential regulation of protein dynamics in splanchnic and skeletal muscle beds by insulin and amino acids in healthy human subjects
    • Nygren J, Nair KS, (2003) Differential regulation of protein dynamics in splanchnic and skeletal muscle beds by insulin and amino acids in healthy human subjects. Diabetes 52: 1377-1385.
    • (2003) Diabetes , vol.52 , pp. 1377-1385
    • Nygren, J.1    Nair, K.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.