-
1
-
-
33645278642
-
Mobilizing the base of neuroscience data: The case of neuronal morphologies
-
Ascoli, G. A. (2006). Mobilizing the base of neuroscience data: the case of neuronal morphologies. Nat. Rev. Neurosci. 7, 318-324.
-
(2006)
Nat. Rev. Neurosci.
, vol.7
, pp. 318-324
-
-
Ascoli, G.A.1
-
2
-
-
34548458204
-
NeuroMorpho. Org-A central resource for neuronal morphologies
-
Ascoli, G. A., Donohue, D., and Halavi, M. (2007). NeuroMorpho. Org-A central resource for neuronal morphologies. J. Neurosci. 27, 9247-9251.
-
(2007)
J. Neurosci.
, vol.27
, pp. 9247-9251
-
-
Ascoli, G.A.1
Donohue, D.2
Halavi, M.3
-
3
-
-
0034749128
-
Computer generation and quantitative morphometric analysis of virtual neurons
-
Ascoli, G. A., Krichmar, J., Scorcioni, R., Nasuto, S. J., and Senft, S. (2001). Computer generation and quantitative morphometric analysis of virtual neurons. Anat. Embryol. 204, 283-301.
-
(2001)
Anat. Embryol.
, vol.204
, pp. 283-301
-
-
Ascoli, G.A.1
Krichmar, J.2
Scorcioni, R.3
Nasuto, S.J.4
Senft, S.5
-
4
-
-
0031215825
-
Interactive live-wire boundary extraction
-
Barrett, W. A., and Mortensen, E. N. (1997). Interactive live-wire boundary extraction. Med. Image Anal. 1, 331-341.
-
(1997)
Med. Image Anal.
, vol.1
, pp. 331-341
-
-
Barrett, W.A.1
Mortensen, E.N.2
-
5
-
-
79958105763
-
Principal curves as skeletons of tubular objects: Locally characterizing the structures of axons
-
Bas, E., and Erdogmus, D. (2011). Principal curves as skeletons of tubular objects: locally characterizing the structures of axons. Neuroinformatics 9, 181-191.
-
(2011)
Neuroinformatics
, vol.9
, pp. 181-191
-
-
Bas, E.1
Erdogmus, D.2
-
6
-
-
79958135341
-
The DIADEM data sets: Representative light microscopy images of neuronal morphology to advance automation of digital reconstructions
-
Brown, K. M., Barrionuevo, G., Canty, A. J., De Paola, V., Hirsch, J. A., Jefferis, G. S., Lu, J., Snippe, M., Sugihara, I., andAscoli, G.A. (2011). The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions. Neuroinformatics 9, 143-157.
-
(2011)
Neuroinformatics
, vol.9
, pp. 143-157
-
-
Brown, K.M.1
Barrionuevo, G.2
Canty, A.J.3
De Paola, V.4
Hirsch, J.A.5
Jefferis, G.S.6
Lu, J.7
Snippe, M.8
Sugihara, I.9
Ascoli, G.A.10
-
7
-
-
27844496066
-
A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks
-
Brown, K. M., Donohue, D. E., D'Alessandro, G., and Ascoli, G. A. (2005). A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks. Neuroinformatics 3, 343-359.
-
(2005)
Neuroinformatics
, vol.3
, pp. 343-359
-
-
Brown, K.M.1
Donohue, D.E.2
D'Alessandro, G.3
Ascoli, G.A.4
-
8
-
-
0032192309
-
An on-line archive of reconstructed hippocampal neurons
-
Cannon, R. C., Turner, D. A., Pyapali, G. K., and Wheal, H. V. (1998). An on-line archive of reconstructed hippocampal neurons. J. Neurosci. Methods 84, 49-54.
-
(1998)
J. Neurosci. Methods
, vol.84
, pp. 49-54
-
-
Cannon, R.C.1
Turner, D.A.2
Pyapali, G.K.3
Wheal, H.V.4
-
9
-
-
79958088818
-
Automated tracing of neurites from light microscopy stacks of images
-
Chothani, P., Mehta, V., and Stepanyants, A. (2011). Automated tracing of neurites from light microscopy stacks of images. Neuroinformatics 9, 263-278.
-
(2011)
Neuroinformatics
, vol.9
, pp. 263-278
-
-
Chothani, P.1
Mehta, V.2
Stepanyants, A.3
-
10
-
-
0025342635
-
Two-photon laser scanning fluorescence microscopy
-
Denk, W., Strickler, J. H., and Webb, W. W. (1990). Two-photon laser scanning fluorescence microscopy. Science 248, 73-76.
-
(1990)
Science
, vol.248
, pp. 73-76
-
-
Denk, W.1
Strickler, J.H.2
Webb, W.W.3
-
11
-
-
27844457737
-
Quantitative characterization of the hippocampal CA1 pyramidal cell dendritic field in stratum moleculare
-
Desmond, N. L., Heydenreich, M. S., and Levy, W. B. (1990). Quantitative characterization of the hippocampal CA1 pyramidal cell dendritic field in stratum moleculare. Anat. Rec. 226, 26A.
-
(1990)
Anat. Rec.
, vol.226
-
-
Desmond, N.L.1
Heydenreich, M.S.2
Levy, W.B.3
-
12
-
-
0020412723
-
A quantitative anatomical study of the granule cell dendritic fields of the rat dentate gyrus using a novel probabilistic method
-
Desmond, N. L., and Levy, W. B. (1982). A quantitative anatomical study of the granule cell dendritic fields of the rat dentate gyrus using a novel probabilistic method. J. Comp. Neurol. 212, 131-145.
-
(1982)
J. Comp. Neurol.
, vol.212
, pp. 131-145
-
-
Desmond, N.L.1
Levy, W.B.2
-
13
-
-
34147120474
-
A note on two problems in connexion with graphs
-
Dijkstra, E. (1959). A note on two problems in connexion with graphs. Numer. Math. 1, 269-270.
-
(1959)
Numer. Math.
, vol.1
, pp. 269-270
-
-
Dijkstra, E.1
-
14
-
-
79957954506
-
Automated reconstruction of neuronal morphology: An overview
-
Donohue, D., and Ascoli, G. A. (2011). Automated reconstruction of neuronal morphology: an overview. Brain Res. Rev. 67, 94-102.
-
(2011)
Brain Res. Rev.
, vol.67
, pp. 94-102
-
-
Donohue, D.1
Ascoli, G.A.2
-
15
-
-
0032122075
-
User-steered image segmentation paradigms: Live wire and live lane
-
Falcao, A. X., Udupa, J. K., Samarasekera, S., and Sharma, S. (1998). User-steered image segmentation paradigms: live wire and live lane. Graph. Models 60, 233-260.
-
(1998)
Graph. Models
, vol.60
, pp. 233-260
-
-
Falcao, A.X.1
Udupa, J.K.2
Samarasekera, S.3
Sharma, S.4
-
17
-
-
79958146216
-
The DIADEM metric: Comparing multiple reconstructions of the same neuron
-
Gillette, T. A., Brown, K. M., and Ascoli, G. A. (2011a). The DIADEM metric: comparing multiple reconstructions of the same neuron. Neuroinformatics 9, 233-245.
-
(2011)
Neuroinformatics
, vol.9
, pp. 233-245
-
-
Gillette, T.A.1
Brown, K.M.2
Ascoli, G.A.3
-
18
-
-
79958143278
-
DIADEMchallenge. Org: A compendium of resources fostering the continuous development of automated neuronal reconstruction
-
Gillette, T. A., Brown, K. M., Svoboda, K., Liu, Y., and Ascoli, G. A. (2011b). DIADEMchallenge. Org: a compendium of resources fostering the continuous development of automated neuronal reconstruction. Neuroinformatics 9, 303-304.
-
(2011)
Neuroinformatics
, vol.9
, pp. 303-304
-
-
Gillette, T.A.1
Brown, K.M.2
Svoboda, K.3
Liu, Y.4
Ascoli, G.A.5
-
19
-
-
85057656958
-
Accurate reconstruction of neuronal morphology
-
in, ed. E. De Schutter (Boca Raton: Lewis Publishers, Inc.)
-
Jaeger, D. (2000). "Accurate reconstruction of neuronal morphology, " in Computational Neuroscience: Realistic Modelingfor Experimentalists, ed. E. De Schutter (Boca Raton: Lewis Publishers, Inc.), 159-178.
-
(2000)
Computational Neuroscience: Realistic Modelingfor Experimentalists
, pp. 159-178
-
-
Jaeger, D.1
-
20
-
-
0042471946
-
Neuronal morphology data bases: Morphological noise and assessment of data quality
-
Kaspirzhny, A. V., Gogan, P., Horcholle-Bossavit, G., and Tyc-Dumont, S. (2002). Neuronal morphology data bases: morphological noise and assessment of data quality. Network 13, 357-380.
-
(2002)
Network
, vol.13
, pp. 357-380
-
-
Kaspirzhny, A.V.1
Gogan, P.2
Horcholle-Bossavit, G.3
Tyc-Dumont, S.4
-
21
-
-
0033797735
-
Dendritic anomalies in disorders associated with mental retardation
-
Kaufmann, E. W., and Moser, W. H. (2000). Dendritic anomalies in disorders associated with mental retardation. Cereb. Cortex 10, 981-991.
-
(2000)
Cereb. Cortex
, vol.10
, pp. 981-991
-
-
Kaufmann, E.W.1
Moser, W.H.2
-
22
-
-
0028297857
-
A comparison of the muscarinic response and morphological properties of identified cells in the guinea-pig olfac-torycortex in vitro
-
Libri, V., Constanti, A., Calaminici, M., and Nistic, G. (1994). A comparison of the muscarinic response and morphological properties of identified cells in the guinea-pig olfac-torycortex in vitro. Neuroscience 59, 331-347.
-
(1994)
Neuroscience
, vol.59
, pp. 331-347
-
-
Libri, V.1
Constanti, A.2
Calaminici, M.3
Nistic, G.4
-
23
-
-
79958108701
-
The DIADEM and beyond
-
Liu, Y. (2011). The DIADEM and beyond. Neuroinformatics 9, 99-102.
-
(2011)
Neuroinformatics
, vol.9
, pp. 99-102
-
-
Liu, Y.1
-
24
-
-
79958097484
-
Neuronal tracing for connectomic studies
-
Lu, J. (2011). Neuronal tracing for connectomic studies. Neuroinformatics 9, 159-166.
-
(2011)
Neuroinformatics
, vol.9
, pp. 159-166
-
-
Lu, J.1
-
26
-
-
1942470024
-
Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images
-
Meijering, E., Jacob, M., Sarria, J. C. F., Steiner, P., Hirling, H., and Unser, M. (2004). Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry 58A, 167-176.
-
(2004)
Cytometry
, vol.58 A
, pp. 167-176
-
-
Meijering, E.1
Jacob, M.2
Sarria, J.C.F.3
Steiner, P.4
Hirling, H.5
Unser, M.6
-
28
-
-
48149094393
-
Towardsthe automatic reconstruction of dendritic trees using particle filters
-
in, Cambridge
-
Myatt, D. R., Nasuto, S. J., and May-bank, S.J. (2006). "Towardsthe automatic reconstruction of dendritic trees using particle filters, " in Proceedings of Nonlinear Statistical Signal Processing Workshop 2006 (on CD-ROM), Cambridge.
-
(2006)
Proceedings of Nonlinear Statistical Signal Processing Workshop 2006 (on CD-ROM)
-
-
Myatt, D.R.1
Nasuto, S.J.2
May-bank, S.J.3
-
29
-
-
79958130994
-
3-D image preprocessing algorithms for improved automated tracing of neuronal arbors
-
Narayanaswamy, A., Wang, Y., and Roysam, B. (2011). 3-D image preprocessing algorithms for improved automated tracing of neuronal arbors. Neuroinformatics 9, 219-231.
-
(2011)
Neuroinformatics
, vol.9
, pp. 219-231
-
-
Narayanaswamy, A.1
Wang, Y.2
Roysam, B.3
-
30
-
-
17144447547
-
Relation between neuronal morphology and electrophysiology in the Kainate lesion model of Alzheimer's Disease
-
Nasuto, S. J., Knape, R., Krichmar, J. L., and Ascoli, G. A. (2001). Relation between neuronal morphology and electrophysiology in the Kainate lesion model of Alzheimer's Disease. Neurocomputing 38-40, 1477-1487.
-
(2001)
Neurocomputing
, vol.38-40
, pp. 1477-1487
-
-
Nasuto, S.J.1
Knape, R.2
Krichmar, J.L.3
Ascoli, G.A.4
-
31
-
-
79958083819
-
Proof-editing is the bottleneck of 3D neuron reconstruction: The problem and solutions
-
Peng, H., Long, F., Zhao, T., and Myers, E. (2011). Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions. Neuroinformatics 9, 103-105.
-
(2011)
Neuroinformatics
, vol.9
, pp. 103-105
-
-
Peng, H.1
Long, F.2
Zhao, T.3
Myers, E.4
-
32
-
-
0037402856
-
Automated reconstruction ofthree-dimensional neuronal morphology from laser scanning microscopy images
-
Rodriguez, A., Ehlenberger, D., Kelliher, K., Einstein, M., Henderson, S. C., Morrison, J. H., Hof, P. R., and Wearne, S. L. (2003). Automated reconstruction ofthree-dimensional neuronal morphology from laser scanning microscopy images. Methods 30, 94-105.
-
(2003)
Methods
, vol.30
, pp. 94-105
-
-
Rodriguez, A.1
Ehlenberger, D.2
Kelliher, K.3
Einstein, M.4
Henderson, S.C.5
Morrison, J.H.6
Hof, P.R.7
Wearne, S.L.8
-
33
-
-
79952123974
-
Axonal morphometry of hippocampal pyramidal neurons semi-automatically reconstructed after in-vivo labeling in different CA3 locations
-
Ropireddy, D., Scorcioni, R., Lasher, B., Buzsáki, G., and Ascoli, G. (2011). Axonal morphometry of hippocampal pyramidal neurons semi-automatically reconstructed after in-vivo labeling in different CA3 locations. Brain Struct. Funct. 216, 1-15.
-
(2011)
Brain Struct. Funct.
, vol.216
, pp. 1-15
-
-
Ropireddy, D.1
Scorcioni, R.2
Lasher, B.3
Buzsáki, G.4
Ascoli, G.5
-
34
-
-
2342528455
-
Quantitative morphometry of hippocampal pyramidal cells: Differences between anatomical classes and reconstructing laboratories
-
Scorcioni, R., Lazarewicz, M. T., and Ascoli, G. A. (2004). Quantitative morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories. J. Comp. Neurol. 473, 177-193.
-
(2004)
J. Comp. Neurol.
, vol.473
, pp. 177-193
-
-
Scorcioni, R.1
Lazarewicz, M.T.2
Ascoli, G.A.3
-
35
-
-
43149098519
-
L-Measure: A web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies
-
Scorcioni, R., Polavaram, S., and Ascoli, G. A. (2008). L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies. Nat. Protoc. 3, 866-876.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 866-876
-
-
Scorcioni, R.1
Polavaram, S.2
Ascoli, G.A.3
-
36
-
-
79958213697
-
A brief history of neuronal reconstruction
-
Senft, S. L. (2011). A brief history of neuronal reconstruction. Neuroinformatics 9, 119-128.
-
(2011)
Neuroinformatics
, vol.9
, pp. 119-128
-
-
Senft, S.L.1
-
37
-
-
79958177813
-
The past, present and future of single neuron reconstruction
-
Svoboda, K. (2011). The past, present and future of single neuron reconstruction. Neuroinformatics 9, 97-98.
-
(2011)
Neuroinformatics
, vol.9
, pp. 97-98
-
-
Svoboda, K.1
-
38
-
-
79958172203
-
Automated reconstruction of dendritic and axonal trees by global optimization with geometric priors
-
279-302
-
Türetken, E., González, G., Blum, C., and Fua, P. (2011). Automated reconstruction of dendritic and axonal trees by global optimization with geometric priors. Neuroinformatics 9, 279-302.
-
(2011)
Neuroinformatics
, vol.9
-
-
Türetken, E.1
González, G.2
Blum, C.3
Fua, P.4
-
39
-
-
77955487108
-
Impact of dendritic size and dendritic topology on burst firing in pyramidal cells
-
doi:10.1371/jour-nal.pcbi1000781
-
van Elburg, R. A. J., and van Ooyen, A. (2010). Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. PLoS Comput. Biol. 6, e1000781. doi:10.1371/jour-nal.pcbi.1000781
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
van Elburg, R.A.J.1
van Ooyen, A.2
-
40
-
-
79958104510
-
A broadlyapplicable 3-D neuron tracing method based on open-curve snake
-
Wang, Y., Narayanaswamy, A., Tsai, C. L., and Roysam, B. (2011). A broadlyapplicable 3-D neuron tracing method based on open-curve snake. Neuroinformatics 9, 193-217.
-
(2011)
Neuroinformatics
, vol.9
, pp. 193-217
-
-
Wang, Y.1
Narayanaswamy, A.2
Tsai, C.L.3
Roysam, B.4
-
41
-
-
23444433095
-
Further characterization of muscarinic agonist-induced epileptiform bursting activity in immature rat piriform cortex, in vitro
-
Whalley, B. J., Postlethwaite, M., and Constanti, A. (2005). Further characterization of muscarinic agonist-induced epileptiform bursting activity in immature rat piriform cortex, in vitro. Neuroscience 134, 549-566.
-
(2005)
Neuroscience
, vol.134
, pp. 549-566
-
-
Whalley, B.J.1
Postlethwaite, M.2
Constanti, A.3
-
42
-
-
0001884644
-
Individualcompar-isons by ranking methods
-
Wilcoxon, F.(1945). Individualcompar-isons by ranking methods. Biometrics 1, 80-83.
-
(1945)
Biometrics
, vol.1
, pp. 80-83
-
-
Wilcoxon, F.1
-
43
-
-
34147198443
-
Automated neurite extraction using dynamic programming for high-throughput screening of neuron-based assays
-
Zhang, Y., Zhou, X., Degterev, A., Lip-inski, M., Adjeroh, D., Yuan, J., and Wong, S. T. C. (2007). Automated neurite extraction using dynamic programming for high-throughput screening of neuron-based assays. Neuroimage 35, 1502-1515.
-
(2007)
Neuroimage
, vol.35
, pp. 1502-1515
-
-
Zhang, Y.1
Zhou, X.2
Degterev, A.3
Lip-inski, M.4
Adjeroh, D.5
Yuan, J.6
Wong, S.T.C.7
-
44
-
-
79958161539
-
Automated reconstruction of neuronal morphology based on local geometrical and global structural models
-
Zhao, T., Xie, J., Amat, F., Clack, N., Ahammad, P., Peng, H., Long, F., and Myers, E. (2011). Automated reconstruction of neuronal morphology based on local geometrical and global structural models. Neuroinformatics 9, 247-261.
-
(2011)
Neuroinformatics
, vol.9
, pp. 247-261
-
-
Zhao, T.1
Xie, J.2
Amat, F.3
Clack, N.4
Ahammad, P.5
Peng, H.6
Long, F.7
Myers, E.8
|