Proof-editing is the bottleneck of 3D neuron reconstruction: The problem and solutions

Neuroinformatics

Volumn 9, Issue 2-3, 2011, Pages 103-105

  Peng, Hanchuan ^a   Long, Fuhui ^a   Zhao, Ting ^a   Myers, Eugene ^a  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

Editing; Neuron reconstruction; Proofreading; V3D; WYSIWYG

Indexed keywords

ALGORITHM; ANIMAL; COMPUTER PROGRAM; CYTOLOGY; DATA MINING; HUMAN; IMAGE CYTOMETRY; IMAGE PROCESSING; METHODOLOGY; NERVE CELL; NEUROANATOMICAL TRACT TRACING; NOTE; PHYSIOLOGY; THREE DIMENSIONAL IMAGING;

ALGORITHMS; ANIMALS; DATA MINING; HUMANS; IMAGE CYTOMETRY; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; NEUROANATOMICAL TRACT-TRACING TECHNIQUES; NEURONS; SOFTWARE; SOFTWARE DESIGN;

EID: 79958083819     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-010-9090-x     Document Type: Note

References (9)

1. Peng H, Ruan Z, Long F, Simpson JH, Myers EW, (2010) "V3D enables real-time 3D visualization and quantitative analysis of largescale biological image data sets," Nature Biotechnology, 28(4): 348-353.
2. Peng H, Ruan Z, Atasoy D, Sternson S, (2010) "Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model," Bioinformatics, 26(12): i38-i46.
3. Bas E, Erdogmus D (2011) Principal Curves as Skeletons of Tubular Objects: Locally Characterizing the Structures of Axons. Neuroinformatics, doi:10.1007/s12021-011-9105-2.
4. Chothani P, Mehta V, Stepanyants A (2011) Automated tracing of neurites from light microscopy stacks of images. Neuroinformatics, doi:10.1007/s12021- 011-9121-2.
5. Türetken E, González G, Blum C, Fua P (2011) Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors. Neuroinformatics, doi:10.1007/s12021-011-9122-1.
6. Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E (2011) Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models. Neuroinformatics, doi:10.1007/s12021-011-9120-3.
7. Wang Y, Narayanaswamy A, Tsai C-L, Roysam B (2011) A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake. Neuroinformatics, doi:10.1007/s12021-011-9110-5.
8. Narayanaswamy A, Wang Y, Roysam B (2011) 3-D Image Preprocessing Algorithms for Improved Automated Tracing of Neuronal Arbors. Neuroinformatics, doi:10.1007/s12021-011-9116-z.
9. Luisi J, Narayanaswamy A, Galbreath Z, Roysam B, (2011) The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions. Neuroinformatics, doi:10.1007/s12021-011-9115-0.