-
1
-
-
0017895903
-
Molecular theory of polyelectrolyte solutions with applications to electrostatic properties of polynucleotides
-
Manning, G. S. Molecular theory of polyelectrolyte solutions with applications to electrostatic properties of polynucleotides Q. Rev. Biophys. 1978, 11, 179-246
-
(1978)
Q. Rev. Biophys.
, vol.11
, pp. 179-246
-
-
Manning, G.S.1
-
2
-
-
33745774997
-
Direct force measurements on DNA in a solid-state nanopore
-
Keyser, U. F. Direct force measurements on DNA in a solid-state nanopore Nat. Phys. 2006, 2, 473-477
-
(2006)
Nat. Phys.
, vol.2
, pp. 473-477
-
-
Keyser, U.F.1
-
3
-
-
0018819243
-
Comparison of poly-electrolyte theories of the binding of cations to DNA
-
Wilson, R. W.; Rau, D. C.; Bloomfield, V. A. Comparison of poly-electrolyte theories of the binding of cations to DNA Biophys. J. 1980, 30, 317-325
-
(1980)
Biophys. J.
, vol.30
, pp. 317-325
-
-
Wilson, R.W.1
Rau, D.C.2
Bloomfield, V.A.3
-
4
-
-
34248351114
-
Solid-state nanopores
-
Dekker, C. Solid-state nanopores Nat. Nanotechnol. 2007, 2, 209-215
-
(2007)
Nat. Nanotechnol.
, vol.2
, pp. 209-215
-
-
Dekker, C.1
-
5
-
-
69249086081
-
Nanopore analytics: Sensing of single molecules
-
Howorka, S.; Siwy, Z. Nanopore analytics: sensing of single molecules Chem. Soc. Rev. 2009, 38, 2360-2384
-
(2009)
Chem. Soc. Rev.
, vol.38
, pp. 2360-2384
-
-
Howorka, S.1
Siwy, Z.2
-
6
-
-
53649108801
-
The potential and challenges of nanopore sequencing
-
Branton, D. The potential and challenges of nanopore sequencing Nat. Biotechnol. 2008, 26, 1146-1153
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1146-1153
-
-
Branton, D.1
-
7
-
-
77953677764
-
Deciphering ionic current signatures of DNA transport through a nanopore
-
Aksimentiev, A. Deciphering ionic current signatures of DNA transport through a nanopore Nanoscale 2010, 2, 68-483
-
(2010)
Nanoscale
, vol.2
, pp. 68-483
-
-
Aksimentiev, A.1
-
8
-
-
0141955818
-
DNA molecules and configurations in a solid-state nanopore microscope
-
Li, J. L.; Gershow, M.; Stein, D.; Brandin, E.; Golovchenko, J. A. DNA molecules and configurations in a solid-state nanopore microscope Nat. Mater. 2003, 2, 611-615
-
(2003)
Nat. Mater.
, vol.2
, pp. 611-615
-
-
Li, J.L.1
Gershow, M.2
Stein, D.3
Brandin, E.4
Golovchenko, J.A.5
-
9
-
-
68949103733
-
Distinguishing Single- and Double-Stranded Nucleic Acid Molecules Using Solid-State Nanopores
-
Skinner, G. M.; van den Hout, M.; Broekmans, O.; Dekker, C.; Dekker, N. H. Distinguishing Single- and Double-Stranded Nucleic Acid Molecules Using Solid-State Nanopores Nano Lett. 2009, 9, 2953-2960
-
(2009)
Nano Lett.
, vol.9
, pp. 2953-2960
-
-
Skinner, G.M.1
Van Den Hout, M.2
Broekmans, O.3
Dekker, C.4
Dekker, N.H.5
-
10
-
-
33747848433
-
Nanobubbles in solid-state nanopores
-
Smeets, R. M. M.; Keyser, U. F.; Wu, M. Y.; Dekker, N. H.; Dekker, C. Nanobubbles in solid-state nanopores Phys. Rev. Lett. 2006, 97, 088101
-
(2006)
Phys. Rev. Lett.
, vol.97
, pp. 088101
-
-
Smeets, R.M.M.1
Keyser, U.F.2
Wu, M.Y.3
Dekker, N.H.4
Dekker, C.5
-
11
-
-
47749097505
-
Synthetic Nanopores as a Test Case for Ion Channel Theories: The Anomalous Mole Fraction Effect
-
Gillespie, D.; Boda, D.; He, Y.; Apel, P.; Siwy, Z. S. Synthetic Nanopores as a Test Case for Ion Channel Theories: The Anomalous Mole Fraction Effect Biophys. J. 2008, 95, 609-619
-
(2008)
Biophys. J.
, vol.95
, pp. 609-619
-
-
Gillespie, D.1
Boda, D.2
He, Y.3
Apel, P.4
Siwy, Z.S.5
-
12
-
-
76649116514
-
Electrostatic Focusing of Unlabeled DNA into Nanoscale Pores using a Salt Gradient
-
Wanunu, M.; Morrison, W.; Rabin, Y.; Grosberg, A. Y.; Meller, A. Electrostatic Focusing of Unlabeled DNA into Nanoscale Pores using a Salt Gradient Nat. Nanotechnol. 2009, 5, 160-165
-
(2009)
Nat. Nanotechnol.
, vol.5
, pp. 160-165
-
-
Wanunu, M.1
Morrison, W.2
Rabin, Y.3
Grosberg, A.Y.4
Meller, A.5
-
13
-
-
19844377250
-
Monovalent Cations Affect the Free Solution Mobility of DNA by Perturbing the Hydrogen-Bonded Structure of Water
-
Stellwagen, E.; Dong, Q.; Stellwagen, N. C. Monovalent Cations Affect the Free Solution Mobility of DNA by Perturbing the Hydrogen-Bonded Structure of Water Biopolymers 2005, 78, 62
-
(2005)
Biopolymers
, vol.78
, pp. 62
-
-
Stellwagen, E.1
Dong, Q.2
Stellwagen, N.C.3
-
14
-
-
77951040294
-
Unraveling Single-Stranded DNA in a Solid-State Nanopore
-
Kowalczyk, S. W.; Tuijtel, M. W.; Donkers, S. P.; Dekker, C. Unraveling Single-Stranded DNA in a Solid-State Nanopore Nano Lett. 2010, 10, 1414-1420
-
(2010)
Nano Lett.
, vol.10
, pp. 1414-1420
-
-
Kowalczyk, S.W.1
Tuijtel, M.W.2
Donkers, S.P.3
Dekker, C.4
-
15
-
-
23144448498
-
Fast DNA Translocation through a Solid-State Nanopore
-
Storm, A. J. Fast DNA Translocation through a Solid-State Nanopore Nano Lett. 2005, 5, 1193-1197
-
(2005)
Nano Lett.
, vol.5
, pp. 1193-1197
-
-
Storm, A.J.1
-
16
-
-
74849140157
-
Detection of Local Protein Structures along DNA Using Solid-State Nanopores
-
Kowalczyk, S. W.; Hall, A. R.; Dekker, C. Detection of Local Protein Structures along DNA Using Solid-State Nanopores Nano Lett. 2010, 10, 324-328
-
(2010)
Nano Lett.
, vol.10
, pp. 324-328
-
-
Kowalczyk, S.W.1
Hall, A.R.2
Dekker, C.3
-
17
-
-
34548414064
-
Charge inversion accompanies DNA condensation by multivalent ions
-
Besteman, K.; Van Eijk, K.; Lemay, S. G. Charge inversion accompanies DNA condensation by multivalent ions Nat. Phys. 2007, 3, 641-644
-
(2007)
Nat. Phys.
, vol.3
, pp. 641-644
-
-
Besteman, K.1
Van Eijk, K.2
Lemay, S.G.3
-
18
-
-
77957605215
-
Electric and electrophoretic inversion of the DNA charge in multivalent electrolytes
-
Luan, B.; Aksimentiev, A. Electric and electrophoretic inversion of the DNA charge in multivalent electrolytes Soft Matter 2010, 6, 243-246
-
(2010)
Soft Matter
, vol.6
, pp. 243-246
-
-
Luan, B.1
Aksimentiev, A.2
-
19
-
-
58149299894
-
DNA Translocation Governed by Interactions with Solid-State Nanopores
-
Wanunu, M.; Sutin, J.; McNally, B.; Chow, A.; Meller, A. DNA Translocation Governed by Interactions with Solid-State Nanopores Biophys. J. 2008, 95, 4716-4725
-
(2008)
Biophys. J.
, vol.95
, pp. 4716-4725
-
-
Wanunu, M.1
Sutin, J.2
McNally, B.3
Chow, A.4
Meller, A.5
-
20
-
-
4344617341
-
Nucleic acid transport through carbon nanotube membranes
-
Yeh, I. C.; Hummer, G. Nucleic acid transport through carbon nanotube membranes Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 12177-12182
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 12177-12182
-
-
Yeh, I.C.1
Hummer, G.2
-
21
-
-
78649858398
-
Distinguishable Populations Report on the Interactions of Single DNA Molecules with Solid-State Nanopores
-
Van den Hout, M.; Krudde, V.; Janssen, X. J. A.; Dekker, N. H. Distinguishable Populations Report on the Interactions of Single DNA Molecules with Solid-State Nanopores Biophys. J. 2010, 99, 3840-3848
-
(2010)
Biophys. J.
, vol.99
, pp. 3840-3848
-
-
Van Den Hout, M.1
Krudde, V.2
Janssen, X.J.A.3
Dekker, N.H.4
-
22
-
-
84856962675
-
-
private communication
-
Schneider, G. F.; private communication.
-
-
-
Schneider, G.F.1
-
23
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C. Scalable molecular dynamics with NAMD J. Comput. Chem. 2005, 26, 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
-
24
-
-
0041784950
-
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
-
MacKerell, A. D., Jr. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins J. Phys. Chem. B 1998, 102, 3586-3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, Jr.A.D.1
-
25
-
-
4444351490
-
Empirical force fields for biological macromolecules: Overview and issues
-
MacKerell, A. D., Jr. Empirical force fields for biological macromolecules: Overview and issues J. Comput. Chem. 2004, 25, 1584-1604
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1584-1604
-
-
MacKerell, Jr.A.D.1
-
26
-
-
0029878720
-
VMD - Visual Molecular Dynamics
-
Humphrey, W.; Dalke, A.; Schulten, K. VMD - Visual Molecular Dynamics J. Mol. Graphics 1996, 14, 33-38
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
27
-
-
33751266937
-
Water-Silica Force Field for Simulating Nanodevices
-
Cruz-Chu, E. R.; Aksimentiev, A.; Schulten, K. Water-Silica Force Field for Simulating Nanodevices J. Phys. Chem. B 2006, 110, 21497-21508
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 21497-21508
-
-
Cruz-Chu, E.R.1
Aksimentiev, A.2
Schulten, K.3
-
28
-
-
31544458221
-
Fabrication and Characterization of Nanopore-Based Electrodes with Radii down to 2 nm
-
Krapf, D. Fabrication and Characterization of Nanopore-Based Electrodes with Radii down to 2 nm Nano Lett. 2006, 6, 105-109
-
(2006)
Nano Lett.
, vol.6
, pp. 105-109
-
-
Krapf, D.1
-
29
-
-
78149460148
-
Solid-State Nanopore based Detection of Urea-Induced Internal Denaturation of dsDNA
-
Singer, A.; Kuhn, H.; Frank-Kamenetskii, M.; Meller, A. Solid-State Nanopore based Detection of Urea-Induced Internal Denaturation of dsDNA J. Phys.: Condens. Matter 2010, 22, 454111
-
(2010)
J. Phys.: Condens. Matter
, vol.22
, pp. 454111
-
-
Singer, A.1
Kuhn, H.2
Frank-Kamenetskii, M.3
Meller, A.4
-
30
-
-
25844474523
-
Slowing DNA Translocation in a Solid-State Nanopore
-
Fologea, D.; Uplinger, J.; Thomas, B.; McNabb, D. S.; Li, J. L. Slowing DNA Translocation in a Solid-State Nanopore Nano Lett. 2005, 5, 1734-1737
-
(2005)
Nano Lett.
, vol.5
, pp. 1734-1737
-
-
Fologea, D.1
Uplinger, J.2
Thomas, B.3
McNabb, D.S.4
Li, J.L.5
-
31
-
-
0030947539
-
Ionic effects on the elasticity of single DNA molecules
-
Baumann, C. G.; Smith, S. B.; Bloomfield, V. A.; Bustamante, C. Ionic effects on the elasticity of single DNA molecules Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 6185-6190
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 6185-6190
-
-
Baumann, C.G.1
Smith, S.B.2
Bloomfield, V.A.3
Bustamante, C.4
-
32
-
-
84855431691
-
2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems
-
2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems J. Phys. Chem. Lett. 2012, 3, 45-50
-
(2012)
J. Phys. Chem. Lett.
, vol.3
, pp. 45-50
-
-
Yoo, J.1
Aksimentiev, A.2
-
34
-
-
80052427214
-
Origins and consequences of velocity fluctuations during DNA passage through a nanopore
-
Lu, B. Origins and consequences of velocity fluctuations during DNA passage through a nanopore Biophys. J. 2011, 101, 70-79
-
(2011)
Biophys. J.
, vol.101
, pp. 70-79
-
-
Lu, B.1
-
35
-
-
67649206290
-
Origin of the electrophoretic force on DNA in solid-state nanopores
-
van Dorp, S. Origin of the electrophoretic force on DNA in solid-state nanopores Nat. Phys. 2009, 5, 347-351
-
(2009)
Nat. Phys.
, vol.5
, pp. 347-351
-
-
Van Dorp, S.1
-
36
-
-
34447255444
-
Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations
-
Skeel, R. D.; Hardy, D. J.; Phillips, J. C. Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations J. Comput. Phys. 2007, 225, 1-5
-
(2007)
J. Comput. Phys.
, vol.225
, pp. 1-5
-
-
Skeel, R.D.1
Hardy, D.J.2
Phillips, J.C.3
|