메뉴 건너뛰기




Volumn 2, Issue 4, 2010, Pages 468-483

Deciphering ionic current signatures of DNA transport through a nanopore

Author keywords

[No Author keywords available]

Indexed keywords

CAUSAL RELATIONSHIPS; CHARGED SOLUTES; DNA STRANDS; DNA TRANSPORT; ELECTROSTATIC POTENTIALS; IONIC CURRENT; MICROSCOPIC MECHANISMS; MOLECULAR SENSING; MOLECULAR SYSTEMS; SINGLE-MOLECULE; STOCHASTIC SENSORS; SYNTHETIC NANOPORES; TIME EVOLUTIONS; VERSATILE SYSTEM;

EID: 77953677764     PISSN: 20403364     EISSN: 20403372     Source Type: Journal    
DOI: 10.1039/b9nr00275h     Document Type: Article
Times cited : (158)

References (183)
  • 1
    • 34248351114 scopus 로고    scopus 로고
    • Solid-state nanopores
    • C. Dekker Solid-state nanopores Nat. Nanotechnol. 2007 2 209 215
    • (2007) Nat. Nanotechnol. , vol.2 , pp. 209-215
    • Dekker, C.1
  • 2
    • 9644273841 scopus 로고    scopus 로고
    • Probing single DNA molecule transpore using fabricated nanopores
    • P. Chen J. Gu E. Brandin Y.-R. Kim Q. Wang D. Branton Probing single DNA molecule transpore using fabricated nanopores Nano Lett. 2004 4 2293 2298
    • (2004) Nano Lett. , vol.4 , pp. 2293-2298
    • Chen, P.1    Gu, J.2    Brandin, E.3    Kim, Y.-R.4    Wang, Q.5    Branton, D.6
  • 6
    • 33646400831 scopus 로고    scopus 로고
    • Fast DNA Sequencing via Transverse Electronic Transport
    • J. Lagerqvist M. Zwolak M. D. Ventra Fast DNA Sequencing via Transverse Electronic Transport Nano Lett. 2006 6 779 782
    • (2006) Nano Lett. , vol.6 , pp. 779-782
    • Lagerqvist, J.1    Zwolak, M.2    Ventra, M.D.3
  • 7
    • 16244377077 scopus 로고    scopus 로고
    • Electronic signature of dna nucleotides via transverse transport
    • M. Zwolak M. D. Ventra Electronic signature of dna nucleotides via transverse transport Nano Lett. 2005 5 421 424
    • (2005) Nano Lett. , vol.5 , pp. 421-424
    • Zwolak, M.1    Ventra, M.D.2
  • 8
    • 31044443423 scopus 로고    scopus 로고
    • Simulation of the electric response of DNA translocation through a semiconductor nanopore-capacitor
    • M. E. Gracheva A. Xiong J.-P. Leburton A. Aksimentiev K. Schulten G. Timp Simulation of the electric response of DNA translocation through a semiconductor nanopore-capacitor Nanotechnology 2006 17 622 633
    • (2006) Nanotechnology , vol.17 , pp. 622-633
    • Gracheva, M.E.1    Xiong, A.2    Leburton, J.-P.3    Aksimentiev, A.4    Schulten, K.5    Timp, G.6
  • 9
    • 38749105770 scopus 로고    scopus 로고
    • Detection of DNA sequence using an alternating electric field in a nanopore capacitor
    • G. Sigalov J. Comer G. Timp A. Aksimentiev Detection of DNA sequence using an alternating electric field in a nanopore capacitor Nano Lett. 2008 8 56 63
    • (2008) Nano Lett. , vol.8 , pp. 56-63
    • Sigalov, G.1    Comer, J.2    Timp, G.3    Aksimentiev, A.4
  • 10
    • 35648963025 scopus 로고    scopus 로고
    • Progress toward ultrafast DNA sequencing using solid-state nanopores
    • G. V. Soni A. Meller Progress toward ultrafast DNA sequencing using solid-state nanopores Clin. Chem. 2007 53 1996 2001
    • (2007) Clin. Chem. , vol.53 , pp. 1996-2001
    • Soni, G.V.1    Meller, A.2
  • 11
    • 0028465092 scopus 로고
    • Counting polymers moving through a single ion channel
    • S. M. Bezrukov I. Vodyanoy V. A. Parsegian Counting polymers moving through a single ion channel Nature 1994 370 279 281
    • (1994) Nature , vol.370 , pp. 279-281
    • Bezrukov, S.M.1    Vodyanoy, I.2    Parsegian, V.A.3
  • 12
    • 47249146817 scopus 로고    scopus 로고
    • Genomes for all
    • G. Church Genomes for all Sci. Am. 2006 294 46 54
    • (2006) Sci. Am. , vol.294 , pp. 46-54
    • Church, G.1
  • 14
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within singe RNA molecules
    • M. Akeson D. Branton J. J. Kasianowicz E. Brandin D. W. Deamer Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within singe RNA molecules Biophys. J. 1999 77 3227 3233
    • (1999) Biophys. J. , vol.77 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.J.3    Brandin, E.4    Deamer, D.W.5
  • 16
    • 0035107270 scopus 로고    scopus 로고
    • Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
    • W. Vercoutere S. Winters-Hilt H. Olsen D. Deamer D. Haussler M. Akeson Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel Nat. Biotechnol. 2001 19 248 252
    • (2001) Nat. Biotechnol. , vol.19 , pp. 248-252
    • Vercoutere, W.1    Winters-Hilt, S.2    Olsen, H.3    Deamer, D.4    Haussler, D.5    Akeson, M.6
  • 18
    • 14844290867 scopus 로고    scopus 로고
    • Recognizing a single base in an individual DNA strand: A step toward DNA sequencing in nanopores
    • N. Ashkenasy J. Sánchez-Quesada H. Bayley M. R. Ghadiri Recognizing a single base in an individual DNA strand: A step toward DNA sequencing in nanopores Angew. Chem., Int. Ed. 2005 44 1401 1404
    • (2005) Angew. Chem., Int. Ed. , vol.44 , pp. 1401-1404
    • Ashkenasy, N.1    Sánchez-Quesada, J.2    Bayley, H.3    Ghadiri, M.R.4
  • 19
    • 4344685227 scopus 로고    scopus 로고
    • Global ribosome motions revealed with elastic network model
    • Y. Wang A. J. Rader I. Bahar R. L. Jernigan Global ribosome motions revealed with elastic network model J. Struct. Biol. 2004 147 302 314
    • (2004) J. Struct. Biol. , vol.147 , pp. 302-314
    • Wang, Y.1    Rader, A.J.2    Bahar, I.3    Jernigan, R.L.4
  • 20
    • 34248399955 scopus 로고    scopus 로고
    • Solid-state nanopore channels with DNA selectivity
    • S. Iqbal D. Akin R. Bashir Solid-state nanopore channels with DNA selectivity Nat. Nanotechnol. 2007 2 243 248
    • (2007) Nat. Nanotechnol. , vol.2 , pp. 243-248
    • Iqbal, S.1    Akin, D.2    Bashir, R.3
  • 21
    • 0033594410 scopus 로고    scopus 로고
    • Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter
    • Q. Gu O. Braha S. Conlan S. Cheley H. Bayley Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter Nature 1999 398 686 690
    • (1999) Nature , vol.398 , pp. 686-690
    • Gu, Q.1    Braha, O.2    Conlan, S.3    Cheley, S.4    Bayley, H.5
  • 23
    • 0034050876 scopus 로고    scopus 로고
    • Ion Channels as Molecular Coulter Counters to Probe Metabolite Transport
    • S. M. Bezrukov Ion Channels as Molecular Coulter Counters to Probe Metabolite Transport J. Membr. Biol. 2000 174 1 13
    • (2000) J. Membr. Biol. , vol.174 , pp. 1-13
    • Bezrukov, S.M.1
  • 24
    • 27744482622 scopus 로고    scopus 로고
    • Conductance and ion selectivity of a mesoscopic protein nanopore probed with cysteine scanning mutagenesis
    • P. Merzlyak M.-F. Capistrano A. Valeva J. Kasianowicz O. Krasilnikov Conductance and ion selectivity of a mesoscopic protein nanopore probed with cysteine scanning mutagenesis Biophys. J. 2005 89 3059 3070
    • (2005) Biophys. J. , vol.89 , pp. 3059-3070
    • Merzlyak, P.1    Capistrano, M.-F.2    Valeva, A.3    Kasianowicz, J.4    Krasilnikov, O.5
  • 25
    • 0033776849 scopus 로고    scopus 로고
    • Detecting protein analytes that modulate transmembrane movement of a polymer chain within a single protein pore
    • L. Movileanu S. Howorka O. Braha H. Bayley Detecting protein analytes that modulate transmembrane movement of a polymer chain within a single protein pore Nat. Biotechnol. 2000 18 1091 1095
    • (2000) Nat. Biotechnol. , vol.18 , pp. 1091-1095
    • Movileanu, L.1    Howorka, S.2    Braha, O.3    Bayley, H.4
  • 31
    • 34447280420 scopus 로고    scopus 로고
    • Urea denaturation of α-hemolysin pore inserted in planar lipid bilayer detected by single nanopore recording: Loss of structural asymmetry
    • M. Pastoriza-Gallego G. Oukhaled J. Mathe B. Thiebot J. Betton L. Auvray J. Pelta Urea denaturation of α-hemolysin pore inserted in planar lipid bilayer detected by single nanopore recording: Loss of structural asymmetry FEBS Lett. 2007 581 3371 3376
    • (2007) FEBS Lett. , vol.581 , pp. 3371-3376
    • Pastoriza-Gallego, M.1    Oukhaled, G.2    Mathe, J.3    Thiebot, B.4    Betton, J.5    Auvray, L.6    Pelta, J.7
  • 36
    • 33847796142 scopus 로고    scopus 로고
    • Multi-nanopore force Spectroscopy for DNA analysis
    • C. Tropini A. Marziali Multi-nanopore force Spectroscopy for DNA analysis Biophys. J. 2007 92 1632 1637
    • (2007) Biophys. J. , vol.92 , pp. 1632-1637
    • Tropini, C.1    Marziali, A.2
  • 38
    • 34948859078 scopus 로고    scopus 로고
    • Controlling DNA capture and propagation through artificial nanopores
    • E. H. Trepagnier A. Radenovic D. Sivak P.G. J. Liphardt Controlling DNA capture and propagation through artificial nanopores Nano Lett. 2007 7 2824 2830
    • (2007) Nano Lett. , vol.7 , pp. 2824-2830
    • Trepagnier, E.H.1    Radenovic, A.2    Sivak, D.3    G, P.4    Liphardt, J.5
  • 39
    • 67649206290 scopus 로고    scopus 로고
    • Origin of the electrophoretic force on dna in solid-state nanopores
    • S. van Dorp U.F.K. N. H. Dekker C. Dekker S. G. Lemay Origin of the electrophoretic force on dna in solid-state nanopores Nat. Phys. 2009 5 347 351
    • (2009) Nat. Phys. , vol.5 , pp. 347-351
    • Van Dorp, S.1    F, K.U.2    Dekker, N.H.3    Dekker, C.4    Lemay, S.G.5
  • 40
    • 33847132253 scopus 로고    scopus 로고
    • Charge- and size-based separation of macromolecules using ultrathin silicon membranes
    • C. C. Striemer T. R. Gaborski J. L. McGrath P. M. Fauchet Charge- and size-based separation of macromolecules using ultrathin silicon membranes Nature 2007 445 749 753
    • (2007) Nature , vol.445 , pp. 749-753
    • Striemer, C.C.1    Gaborski, T.R.2    McGrath, J.L.3    Fauchet, P.M.4
  • 41
    • 36148943499 scopus 로고    scopus 로고
    • Catalyzing the translocation of polypeptides through attractive interactions
    • A. Wolfe M. Mohammad S. Cheley H. Bayley L. Movileanu Catalyzing the translocation of polypeptides through attractive interactions J. Am. Chem. Soc. 2007 129 14034 14041
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 14034-14041
    • Wolfe, A.1    Mohammad, M.2    Cheley, S.3    Bayley, H.4    Movileanu, L.5
  • 42
    • 53649108801 scopus 로고    scopus 로고
    • The potential and challenges of nanopore sequencing
    • D. Branton et al The potential and challenges of nanopore sequencing Nat. Biotechnol. 2008 26 1146 1153
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1146-1153
    • Branton, D.1
  • 43
    • 33751414735 scopus 로고    scopus 로고
    • Sequencing single molecules of DNA
    • H. Bayley Sequencing single molecules of DNA Curr. Opin. Chem. Biol. 2006 10 628 637
    • (2006) Curr. Opin. Chem. Biol. , vol.10 , pp. 628-637
    • Bayley, H.1
  • 44
    • 33645072440 scopus 로고    scopus 로고
    • The race for the $1000 genome
    • R. F. Service The race for the $1000 genome Science 2006 311 1544 1546
    • (2006) Science , vol.311 , pp. 1544-1546
    • Service, R.F.1
  • 45
    • 0035855827 scopus 로고    scopus 로고
    • Stochastic sensors inspired by biology
    • H. Bayley P. S. Cremer Stochastic sensors inspired by biology Nature 2001 413 226 230
    • (2001) Nature , vol.413 , pp. 226-230
    • Bayley, H.1    Cremer, P.S.2
  • 46
    • 14844314875 scopus 로고    scopus 로고
    • Stochastic sensors
    • J. Schmidt Stochastic sensors J. Mater. Chem. 2005 15 831 840
    • (2005) J. Mater. Chem. , vol.15 , pp. 831-840
    • Schmidt, J.1
  • 48
    • 66949130341 scopus 로고    scopus 로고
    • Electronic control of dna polymerase binding and unbinding to single dna molecules
    • N. A. Wilson R. Abu-Shumays B.G. H. Wang K. Lieberman M.A. W. Dunbar Electronic control of dna polymerase binding and unbinding to single dna molecules ACS Nano 2009 3 995 1003
    • (2009) ACS Nano , vol.3 , pp. 995-1003
    • Wilson, N.A.1    Abu-Shumays, R.2    G, B.3    Wang, H.4    Lieberman, K.5    A, M.6    Dunbar, W.7
  • 49
    • 33645704642 scopus 로고    scopus 로고
    • Ion current rectification in nanopores and nanotubes with broken symmetry revisited
    • Z. S. Siwy Ion current rectification in nanopores and nanotubes with broken symmetry revisited Adv. Funct. Mater. 2006 16 735
    • (2006) Adv. Funct. Mater. , vol.16 , pp. 735
    • Siwy, Z.S.1
  • 50
    • 33947110955 scopus 로고    scopus 로고
    • Electrolytic charge inversion at the liquid-solid interface in a nanopore in a doped semiconductor membrane
    • M. Gracheva J.-P. Leburton Electrolytic charge inversion at the liquid-solid interface in a nanopore in a doped semiconductor membrane Nanotechnology 2007 18 145704 145710
    • (2007) Nanotechnology , vol.18 , pp. 145704-145710
    • Gracheva, M.1    Leburton, J.-P.2
  • 51
    • 33847269755 scopus 로고    scopus 로고
    • Electrically tunable solid-state silicon nanopore ion filter
    • J. Vidal M. Gracheva J.-P. Leburton Electrically tunable solid-state silicon nanopore ion filter Nanoscale Res. Lett. 2007 2 61 68
    • (2007) Nanoscale Res. Lett. , vol.2 , pp. 61-68
    • Vidal, J.1    Gracheva, M.2    Leburton, J.-P.3
  • 52
    • 42649120710 scopus 로고    scopus 로고
    • Simulation of electrically tunable semiconductor nanopores for ion current/single bio-molecule manipulation
    • M. Gracheva J.-P. Leburton Simulation of electrically tunable semiconductor nanopores for ion current/single bio-molecule manipulation J. Comput. Electron. 2008 7 6 9
    • (2008) J. Comput. Electron. , vol.7 , pp. 6-9
    • Gracheva, M.1    Leburton, J.-P.2
  • 53
    • 58049221304 scopus 로고    scopus 로고
    • Multilayered semiconductor membranes for nanopore ionic conductance modulation
    • M. Gracheva D. Melnikov J.-P. Leburton Multilayered semiconductor membranes for nanopore ionic conductance modulation ACS Nano 2008 2 2349 2355
    • (2008) ACS Nano , vol.2 , pp. 2349-2355
    • Gracheva, M.1    Melnikov, D.2    Leburton, J.-P.3
  • 54
    • 34547106022 scopus 로고    scopus 로고
    • Learning nature's way: Biosensing with synthetic nanopores
    • C. R. Martin Z. S. Siwy Learning nature's way: Biosensing with synthetic nanopores Science 2007 317 331
    • (2007) Science , vol.317 , pp. 331
    • Martin, C.R.1    Siwy, Z.S.2
  • 56
    • 36248992516 scopus 로고    scopus 로고
    • Rectified ion transport through concentration gradient in homogeneous silica nanochannels
    • L.-J. Cheng L. Guo Rectified ion transport through concentration gradient in homogeneous silica nanochannels Nano Lett. 2007 7 3165 3171
    • (2007) Nano Lett. , vol.7 , pp. 3165-3171
    • Cheng, L.-J.1    Guo, L.2
  • 58
    • 0025787798 scopus 로고
    • Alpha-toxin of staphylococcus aureus
    • S. Bhakdi J. Tranum-Jensen Alpha-toxin of staphylococcus aureus Microbiol. Rev. 1991 55 733 751
    • (1991) Microbiol. Rev. , vol.55 , pp. 733-751
    • Bhakdi, S.1    Tranum-Jensen, J.2
  • 59
    • 0031877366 scopus 로고    scopus 로고
    • α-hemolysin from staphylococcus aureus: An archetype of β-barrel, channel-forming toxins
    • E. Gouaux α-hemolysin from staphylococcus aureus: An archetype of β-barrel, channel-forming toxins J. Struct. Biol. 1998 121 110 122
    • (1998) J. Struct. Biol. , vol.121 , pp. 110-122
    • Gouaux, E.1
  • 60
    • 0022504362 scopus 로고
    • Ionic channels formed by staphylococcus aureus α-toxin: Voltage-dependent inhibition by divalent and trivalent cations
    • G. Menestrina Ionic channels formed by staphylococcus aureus α-toxin: Voltage-dependent inhibition by divalent and trivalent cations J. Membr. Biol. 1986 90 177 190
    • (1986) J. Membr. Biol. , vol.90 , pp. 177-190
    • Menestrina, G.1
  • 62
    • 0036931449 scopus 로고    scopus 로고
    • Probing distance and electrical potential within a protein pore with tethered DNA
    • S. Howorka H. Bayley Probing distance and electrical potential within a protein pore with tethered DNA Biophys. J. 2002 83 3202 3210
    • (2002) Biophys. J. , vol.83 , pp. 3202-3210
    • Howorka, S.1    Bayley, H.2
  • 63
    • 21744440132 scopus 로고    scopus 로고
    • The internal cavity of the staphylococcal α-hemolysin pore accommodates approximately 175 exogenous amino acid residues
    • Y. Jung S. Cheley O. Braha H. Bayley The internal cavity of the staphylococcal α-hemolysin pore accommodates approximately 175 exogenous amino acid residues Biochemistry 2005 44 8919 29
    • (2005) Biochemistry , vol.44 , pp. 8919-29
    • Jung, Y.1    Cheley, S.2    Braha, O.3    Bayley, H.4
  • 64
    • 33845415246 scopus 로고    scopus 로고
    • A genetically encoded pore for the stochastic detection of a protein kinase
    • S. Cheley H. Xie H. Bayley A genetically encoded pore for the stochastic detection of a protein kinase ChemBioChem 2006 7 1923 1927
    • (2006) ChemBioChem , vol.7 , pp. 1923-1927
    • Cheley, S.1    Xie, H.2    Bayley, H.3
  • 65
    • 22244445788 scopus 로고    scopus 로고
    • Imaging alpha-hemolysin with molecular dynamics: Ionic conductance, osmotic permeability and the electrostatic potential map
    • A. Aksimentiev K. Schulten Imaging alpha-hemolysin with molecular dynamics: Ionic conductance, osmotic permeability and the electrostatic potential map Biophys. J. 2005 88 3745 3761
    • (2005) Biophys. J. , vol.88 , pp. 3745-3761
    • Aksimentiev, A.1    Schulten, K.2
  • 67
    • 1242352009 scopus 로고    scopus 로고
    • The structure of a mycobacterial outer membrane channel
    • M. Faller M. Niederweis G. Schultz The structure of a mycobacterial outer membrane channel Science 2004 303 1189 1192
    • (2004) Science , vol.303 , pp. 1189-1192
    • Faller, M.1    Niederweis, M.2    Schultz, G.3
  • 69
    • 0030447720 scopus 로고    scopus 로고
    • Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore
    • L. Song M. R. Hobaugh C. Shustak S. Cheley H. Bayley J. E. Gouaux Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore Science 1996 274 1859 1865
    • (1996) Science , vol.274 , pp. 1859-1865
    • Song, L.1    Hobaugh, M.R.2    Shustak, C.3    Cheley, S.4    Bayley, H.5    Gouaux, J.E.6
  • 70
  • 71
    • 34247537938 scopus 로고    scopus 로고
    • A storable encapsulated bilayer chip containing a single protein nanopore
    • X.-f. Kang S. Cheley A. Rice-Ficht H. Bayley A storable encapsulated bilayer chip containing a single protein nanopore J. Am. Chem. Soc. 2007 129 4701 4705
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 4701-4705
    • X, -F.K.1    Cheley, S.2    Rice-Ficht, A.3    Bayley, H.4
  • 73
    • 0141955818 scopus 로고    scopus 로고
    • DNA molecules and configurations in a solid-state nanopore microscope
    • J. Li M. Gershow D. Stein E. Brandin J. A. Golovchenko DNA molecules and configurations in a solid-state nanopore microscope Nat. Mater. 2003 2 611 615
    • (2003) Nat. Mater. , vol.2 , pp. 611-615
    • Li, J.1    Gershow, M.2    Stein, D.3    Brandin, E.4    Golovchenko, J.A.5
  • 74
  • 76
    • 33748040455 scopus 로고    scopus 로고
    • An extended gate FET-based biosensor integrated with a Si microfluidic channel for detection of protein complexes
    • D. Kim J. Park J. Shin P. Kim G. Lim S. Shoji An extended gate FET-based biosensor integrated with a Si microfluidic channel for detection of protein complexes Sens. Actuators, B 2006 117 488 494
    • (2006) Sens. Actuators, B , vol.117 , pp. 488-494
    • Kim, D.1    Park, J.2    Shin, J.3    Kim, P.4    Lim, G.5    Shoji, S.6
  • 77
    • 33947105421 scopus 로고    scopus 로고
    • Nanopore sequencing technology: Nanopore preparations
    • M. Rhee M. A. Burns Nanopore sequencing technology: nanopore preparations Trends Biotechnol. 2007 25 174 181
    • (2007) Trends Biotechnol. , vol.25 , pp. 174-181
    • Rhee, M.1    Burns, M.A.2
  • 82
    • 34547190841 scopus 로고    scopus 로고
    • Chemically modified solid-state nanopores
    • M. Wanunu A. Meller Chemically modified solid-state nanopores Nano Lett. 2007 7 1580 1585
    • (2007) Nano Lett. , vol.7 , pp. 1580-1585
    • Wanunu, M.1    Meller, A.2
  • 84
    • 34248399955 scopus 로고    scopus 로고
    • Solid-state nanopore channels with DNA selectivity
    • S. M. Iqbal D. Akin R. Bashir Solid-state nanopore channels with DNA selectivity Nat. Nanotechnol. 2007 2 243 248
    • (2007) Nat. Nanotechnol. , vol.2 , pp. 243-248
    • Iqbal, S.M.1    Akin, D.2    Bashir, R.3
  • 85
    • 4143057920 scopus 로고    scopus 로고
    • Atomic layer deposition to fine-tune the surface properties and diameters of fabricated nanopores
    • P. Chen T. Mitsui D. Farmer J. Golovchenko R. Gordon D. Branton Atomic layer deposition to fine-tune the surface properties and diameters of fabricated nanopores Nano Lett. 2004 4 1333 1337
    • (2004) Nano Lett. , vol.4 , pp. 1333-1337
    • Chen, P.1    Mitsui, T.2    Farmer, D.3    Golovchenko, J.4    Gordon, R.5    Branton, D.6
  • 87
    • 0032254714 scopus 로고    scopus 로고
    • Progress toward 10 nm CMOS devices
    • IEEE, pp. 615-618 10.1109/IEDM.1998.746433
    • G. Timp et al., Progress toward 10 nm CMOS devices, Tech. Dig. - Int. Electron Devices Meet., 1998, IEEE, pp. 615-618 10.1109/IEDM.1998.746433
    • (1998) Tech. Dig. - Int. Electron Devices Meet.
    • Timp, G.1
  • 88
    • 0037855911 scopus 로고    scopus 로고
    • Dynamics of polynucleotide transport through nanometre-scale pores
    • A. Meller Dynamics of polynucleotide transport through nanometre-scale pores J. Phys.: Condens. Matter 2003 15 R581 R607
    • (2003) J. Phys.: Condens. Matter , vol.15
    • Meller, A.1
  • 90
    • 0036301334 scopus 로고    scopus 로고
    • Ions and counterions in a biological channel: A molecular dynamics study of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution
    • W. Im B. Roux Ions and counterions in a biological channel: a molecular dynamics study of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution J. Mol. Biol. 2002 319 1177 1197
    • (2002) J. Mol. Biol. , vol.319 , pp. 1177-1197
    • Im, W.1    Roux, B.2
  • 91
    • 15244338641 scopus 로고    scopus 로고
    • Ion permeation through the α-hemolysin channel: Theoretical studies based on Brownian Dynamics and Poisson-Nernst-Plank electrodiffusion theory
    • S. Y. Noskov W. Im B. Roux Ion permeation through the α-hemolysin channel: Theoretical studies based on Brownian Dynamics and Poisson-Nernst-Plank electrodiffusion theory Biophys. J. 2004 87 2299 2309
    • (2004) Biophys. J. , vol.87 , pp. 2299-2309
    • Noskov, S.Y.1    Im, W.2    Roux, B.3
  • 92
    • 33750034205 scopus 로고    scopus 로고
    • The simulation of ionic charge transport in biological ion channels: An introduction to numerical methods
    • M. Saraniti S. Aboud R. Eisenderg The simulation of ionic charge transport in biological ion channels: an introduction to numerical methods Rev. Comput. Chem. 2006 22 229 294
    • (2006) Rev. Comput. Chem. , vol.22 , pp. 229-294
    • Saraniti, M.1    Aboud, S.2    Eisenderg, R.3
  • 96
    • 0030006074 scopus 로고    scopus 로고
    • Molecular dynamics simulations of synthetic peptide folding
    • S.-S. Sung X.-W. Wu Molecular dynamics simulations of synthetic peptide folding Proteins: Struct., Funct., Genet. 1996 25 202 214
    • (1996) Proteins: Struct., Funct., Genet. , vol.25 , pp. 202-214
    • Sung, S.-S.1    Wu, X.-W.2
  • 97
    • 0000102029 scopus 로고    scopus 로고
    • Polymer translocation through a hole
    • M. Muthukumar Polymer translocation through a hole J. Chem. Phys. 1999 111 10371 10374
    • (1999) J. Chem. Phys. , vol.111 , pp. 10371-10374
    • Muthukumar, M.1
  • 98
    • 0038752648 scopus 로고    scopus 로고
    • Polymer translocation through a long nanopore
    • E. Slonkina A. B. Kolomeisky Polymer translocation through a long nanopore J. Chem. Phys. 2003 118 7112 7118
    • (2003) J. Chem. Phys. , vol.118 , pp. 7112-7118
    • Slonkina, E.1    Kolomeisky, A.B.2
  • 99
    • 0037444762 scopus 로고    scopus 로고
    • Polymer escape through a nanopore
    • M. Muthukumar Polymer escape through a nanopore J. Chem. Phys. 2003 118 5174 5184
    • (2003) J. Chem. Phys. , vol.118 , pp. 5174-5184
    • Muthukumar, M.1
  • 101
    • 0032845645 scopus 로고    scopus 로고
    • Driven polymer translocation through a narrow pore
    • D. K. Lubensky D. R. Nelson Driven polymer translocation through a narrow pore Biophys. J. 1999 77 1824 1838
    • (1999) Biophys. J. , vol.77 , pp. 1824-1838
    • Lubensky, D.K.1    Nelson, D.R.2
  • 102
    • 0141642079 scopus 로고    scopus 로고
    • When translocation dynamics becomed anomalous
    • R. Metzler J. Klafter When translocation dynamics becomed anomalous Biophys. J. 2003 85 2776 2779
    • (2003) Biophys. J. , vol.85 , pp. 2776-2779
    • Metzler, R.1    Klafter, J.2
  • 103
    • 2942638263 scopus 로고    scopus 로고
    • Translocation of a single-stranded DNA through a conformationally changing nanopore
    • O. Flomenbom J. Klafter Translocation of a single-stranded DNA through a conformationally changing nanopore Biophys. J. 2004 86 3576 3584
    • (2004) Biophys. J. , vol.86 , pp. 3576-3584
    • Flomenbom, O.1    Klafter, J.2
  • 104
    • 34247644060 scopus 로고    scopus 로고
    • Polymer capture by electro-osmotic flow of oppositely charged nanopores
    • C. Wong M. Muthukumar Polymer capture by electro-osmotic flow of oppositely charged nanopores J. Chem. Phys. 2007 126 164903
    • (2007) J. Chem. Phys. , vol.126 , pp. 164903
    • Wong, C.1    Muthukumar, M.2
  • 106
    • 34547339162 scopus 로고    scopus 로고
    • Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore
    • S. Ghosal Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore Phys. Rev. Lett. 2007 98 238104
    • (2007) Phys. Rev. Lett. , vol.98 , pp. 238104
    • Ghosal, S.1
  • 108
    • 22944467757 scopus 로고
    • Computer 'experiments' on classical fluids: I. Thermodynamical properties of Lennard-Jones molecules
    • L. Verlet Computer 'experiments' on classical fluids: I. Thermodynamical properties of Lennard-Jones molecules Phys. Rev. 1967 159 98 103
    • (1967) Phys. Rev. , vol.159 , pp. 98-103
    • Verlet, L.1
  • 109
    • 0041784950 scopus 로고    scopus 로고
    • All-atom empirical potential for molecular modeling and dynamics studies of proteins
    • A. MacKerell, Jr. et al All-atom empirical potential for molecular modeling and dynamics studies of proteins J. Phys. Chem. B 1998 102 3586 3616
    • (1998) J. Phys. Chem. B , vol.102 , pp. 3586-3616
    • MacKerell Jr., A.1
  • 112
    • 4444234147 scopus 로고    scopus 로고
    • Microscopic kinetics of DNA translocation through synthetic nanopores
    • A. Aksimentiev J. B. Heng G. Timp K. Schulten Microscopic kinetics of DNA translocation through synthetic nanopores Biophys. J. 2004 87 2086 2097
    • (2004) Biophys. J. , vol.87 , pp. 2086-2097
    • Aksimentiev, A.1    Heng, J.B.2    Timp, G.3    Schulten, K.4
  • 114
    • 77953658525 scopus 로고    scopus 로고
    • http://tbgl.physics.illinois.edu/tutorials/
  • 115
    • 0035861454 scopus 로고    scopus 로고
    • Water permeation across biological membranes: Mechanism and dynamics of aquaporin-1 and GlpF
    • B. L. de Groot H. Grubmüller Water permeation across biological membranes: Mechanism and dynamics of aquaporin-1 and GlpF Science 2001 294 2353 2357
    • (2001) Science , vol.294 , pp. 2353-2357
    • De Groot, B.L.1    Grubmüller, H.2
  • 119
    • 0242696086 scopus 로고    scopus 로고
    • Membrane protein simulations: Ion channels and bacterial outer membrane proteins, in
    • F. M. Richards, D. S. Eisenberg, and J. Kuriyan, Academic Press, pp. 159-193
    • C. Domene, P. J. Bond, and M. S. P. Sansom, Membrane protein simulations: Ion channels and bacterial outer membrane proteins, in Advances in Protein Chemistry, ed., F. M. Richards, D. S. Eisenberg, and, J. Kuriyan, 2003, Academic Press, vol. 66, pp. 159-193
    • (2003) Advances in Protein Chemistry, Ed. , vol.66
    • Domene, C.1    Bond, P.J.2    Sansom, M.S.P.3
  • 120
  • 121
    • 1942532321 scopus 로고    scopus 로고
    • Computer simulation of the KvAP voltage-gated potassium channel: Steered molecular dynamics of the voltage sensor
    • L. Monticelli K. Robertson J. MacCallum D. Tieleman Computer simulation of the KvAP voltage-gated potassium channel: steered molecular dynamics of the voltage sensor FEBS Lett. 2004 564 325 332
    • (2004) FEBS Lett. , vol.564 , pp. 325-332
    • Monticelli, L.1    Robertson, K.2    MacCallum, J.3    Tieleman, D.4
  • 122
    • 7244251461 scopus 로고    scopus 로고
    • Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands
    • S. Noskov S. Berneche B. Roux Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands Nature 2004 431 830 834
    • (2004) Nature , vol.431 , pp. 830-834
    • Noskov, S.1    Berneche, S.2    Roux, B.3
  • 123
    • 0037174185 scopus 로고    scopus 로고
    • Orientation and interactions of dipolar molecules during transport through OmpF porin
    • K. M. Robertson D. P. Tieleman Orientation and interactions of dipolar molecules during transport through OmpF porin FEBS Lett. 2002 528 53 57
    • (2002) FEBS Lett. , vol.528 , pp. 53-57
    • Robertson, K.M.1    Tieleman, D.P.2
  • 124
    • 3042772813 scopus 로고    scopus 로고
    • Microscopic mechanism of antibiotics translocation through porin
    • M. Ceccarelli C. Danelon A. Laio M. Parrinello Microscopic mechanism of antibiotics translocation through porin Biophys. J. 2004 87 58 64
    • (2004) Biophys. J. , vol.87 , pp. 58-64
    • Ceccarelli, M.1    Danelon, C.2    Laio, A.3    Parrinello, M.4
  • 126
    • 58849087632 scopus 로고    scopus 로고
    • Microscopic mechanics of hairpin DNA translocation through synthetic nanopores
    • J. Comer V. Dimitrov Q. Zhao G. Timp A. Aksimentiev Microscopic mechanics of hairpin DNA translocation through synthetic nanopores Biophys. J. 2009 96 593 608
    • (2009) Biophys. J. , vol.96 , pp. 593-608
    • Comer, J.1    Dimitrov, V.2    Zhao, Q.3    Timp, G.4    Aksimentiev, A.5
  • 127
    • 5444240787 scopus 로고    scopus 로고
    • Polymer translocation through a nanopore induced by adsorption: Monte Carlo simulations of a coarse-grained model
    • A. Milchev K. Binder A. Bhattacharya Polymer translocation through a nanopore induced by adsorption: Monte Carlo simulations of a coarse-grained model J. Chem. Phys. 2004 121 6042 6051
    • (2004) J. Chem. Phys. , vol.121 , pp. 6042-6051
    • Milchev, A.1    Binder, K.2    Bhattacharya, A.3
  • 129
    • 1642485164 scopus 로고    scopus 로고
    • Coarse grained model for semiquantitative lipid simulations
    • S. J. Marrink A. H. de Vries A. E. Mark Coarse grained model for semiquantitative lipid simulations J. Phys. Chem. B 2004 108 750 760
    • (2004) J. Phys. Chem. B , vol.108 , pp. 750-760
    • Marrink, S.J.1    De Vries, A.H.2    Mark, A.E.3
  • 131
    • 0036672774 scopus 로고    scopus 로고
    • Modeling of polynucleotide translocation through protein pores and nanotubes
    • C. Y. Kong M. Muthukumar Modeling of polynucleotide translocation through protein pores and nanotubes Electrophoresis 2002 23 2697 2703
    • (2002) Electrophoresis , vol.23 , pp. 2697-2703
    • Kong, C.Y.1    Muthukumar, M.2
  • 132
    • 33645765294 scopus 로고    scopus 로고
    • Simulation of polymer translocation through protein channels
    • M. Muthukumar C. Y. Kong Simulation of polymer translocation through protein channels Proc. Natl. Acad. Sci. U. S. A. 2006 103 5273 5278
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 5273-5278
    • Muthukumar, M.1    Kong, C.Y.2
  • 133
    • 34547889925 scopus 로고    scopus 로고
    • Langevin dynamics simulations of ds-DNA translocation through synthetic nanopores
    • C. Forrey M. Muthukumar Langevin dynamics simulations of ds-DNA translocation through synthetic nanopores J. Chem. Phys. 2007 127 015102
    • (2007) J. Chem. Phys. , vol.127 , pp. 015102
    • Forrey, C.1    Muthukumar, M.2
  • 134
    • 0035794251 scopus 로고    scopus 로고
    • Translocation of a confined polymer through a hole
    • M. Muthukumar Translocation of a confined polymer through a hole Phys. Rev. Lett. 2001 86 3188 3191
    • (2001) Phys. Rev. Lett. , vol.86 , pp. 3188-3191
    • Muthukumar, M.1
  • 135
    • 0035935306 scopus 로고    scopus 로고
    • Three-dimensional dynamic Monte Carlo simulations of driven polymer transport through a hole in a wall
    • S. S. Chern A. E. Cárdenas R. D. Coalson Three-dimensional dynamic Monte Carlo simulations of driven polymer transport through a hole in a wall J. Chem. Phys. 2001 115 7772 7782
    • (2001) J. Chem. Phys. , vol.115 , pp. 7772-7782
    • Chern, S.S.1    Cárdenas, A.E.2    Coalson, R.D.3
  • 136
    • 0037463332 scopus 로고    scopus 로고
    • Nanopore sequencing of polynucleotides assisted by a rotating electric field
    • C. Chen E. Peng Nanopore sequencing of polynucleotides assisted by a rotating electric field Appl. Phys. Lett. 2003 82 1308 1310
    • (2003) Appl. Phys. Lett. , vol.82 , pp. 1308-1310
    • Chen, C.1    Peng, E.2
  • 138
    • 34547219930 scopus 로고    scopus 로고
    • Multiscale coupling of molecular dynamics and hydrodynamics: Application to DNA translocation through a nanopore
    • M. G. Fyta S. Melchionna E. Kaxiras S. Succi Multiscale coupling of molecular dynamics and hydrodynamics: Application to DNA translocation through a nanopore Multiscale Model. Simul. 2006 5 1156 1173
    • (2006) Multiscale Model. Simul. , vol.5 , pp. 1156-1173
    • Fyta, M.G.1    Melchionna, S.2    Kaxiras, E.3    Succi, S.4
  • 139
    • 52649124285 scopus 로고    scopus 로고
    • Hydrodynamic correlations in the translocation of a biopolymer through a nanopore: Theory and multiscale simulations
    • M. Fyta S. Melchionna S. Succi E. Kaxiras Hydrodynamic correlations in the translocation of a biopolymer through a nanopore: Theory and multiscale simulations Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 2008 78 036704
    • (2008) Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. , vol.78 , pp. 036704
    • Fyta, M.1    Melchionna, S.2    Succi, S.3    Kaxiras, E.4
  • 142
    • 31044443423 scopus 로고    scopus 로고
    • Simulation of the electric response of DNA translocation through a semiconductor nanopore-capacitor
    • M. Gracheva A. Xiong A. Aksimentiev K. Schulten G. Timp J.-P. Leburton Simulation of the electric response of DNA translocation through a semiconductor nanopore-capacitor Nanotechnology 2006 17 622 633
    • (2006) Nanotechnology , vol.17 , pp. 622-633
    • Gracheva, M.1    Xiong, A.2    Aksimentiev, A.3    Schulten, K.4    Timp, G.5    Leburton, J.-P.6
  • 143
    • 35348886062 scopus 로고    scopus 로고
    • Anton, a special-purpose machine for molecular dynamics simulation.
    • ACM Press, New York, pp. 1-12
    • D. E. Shaw et al., Anton, a special-purpose machine for molecular dynamics simulation. International Symposium on Computer Architecture, 2007, ACM Press, New York, pp. 1-12
    • (2007) International Symposium on Computer Architecture
    • Shaw, D.E.1
  • 146
    • 70350035648 scopus 로고    scopus 로고
    • Understanding ion conductance on a molecular level: An all-atom modeling of the bacterial porin OmpF
    • S. Pezeshki C. Chimerel A. N. Bessonov M. Winterhalter U. Kleinekathofer Understanding ion conductance on a molecular level: An all-atom modeling of the bacterial porin OmpF Biophys. J. 2009 97 1898 1906
    • (2009) Biophys. J. , vol.97 , pp. 1898-1906
    • Pezeshki, S.1    Chimerel, C.2    Bessonov, A.N.3    Winterhalter, M.4    Kleinekathofer, U.5
  • 148
    • 0035449971 scopus 로고    scopus 로고
    • Optimized particle-mesh Ewald/multiple-time step integration for molecular dynamics simulations
    • P. F. Batcho D. A. Case T. Schlick Optimized particle-mesh Ewald/multiple-time step integration for molecular dynamics simulations J. Chem. Phys. 2001 115 4003 4018
    • (2001) J. Chem. Phys. , vol.115 , pp. 4003-4018
    • Batcho, P.F.1    Case, D.A.2    Schlick, T.3
  • 149
    • 50349085059 scopus 로고    scopus 로고
    • Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations
    • R. A. Böckmann B. L. de Groot S. Kakorin E. Neumann H. Grubmüller Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations Biophys. J. 2008 95 1837 1850
    • (2008) Biophys. J. , vol.95 , pp. 1837-1850
    • Böckmann, R.A.1    De Groot, B.L.2    Kakorin, S.3    Neumann, E.4    Grubmüller, H.5
  • 150
    • 0035201785 scopus 로고    scopus 로고
    • Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics
    • P. S. Crozier D. Henderson R. L. Rowley D. D. Busath Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics Biophys. J. 2001 81 3077 3089
    • (2001) Biophys. J. , vol.81 , pp. 3077-3089
    • Crozier, P.S.1    Henderson, D.2    Rowley, R.L.3    Busath, D.D.4
  • 151
    • 10044281664 scopus 로고    scopus 로고
    • Relating microscopic charge movement to macroscopic currents: The ramo-shockley theorem applied to ion channels
    • W. Nonner A. Peyser D. Gillespie B. Eisenberg Relating microscopic charge movement to macroscopic currents: The ramo-shockley theorem applied to ion channels Biophys. J. 2004 87 3716 3722
    • (2004) Biophys. J. , vol.87 , pp. 3716-3722
    • Nonner, W.1    Peyser, A.2    Gillespie, D.3    Eisenberg, B.4
  • 152
    • 0000067560 scopus 로고
    • Current noise reveals protonation kinetics and number of ionizable sites in an open protein ion channel
    • S. M. Bezrukov J. J. Kasianowicz Current noise reveals protonation kinetics and number of ionizable sites in an open protein ion channel Phys. Rev. Lett. 1993 70 2352 2355
    • (1993) Phys. Rev. Lett. , vol.70 , pp. 2352-2355
    • Bezrukov, S.M.1    Kasianowicz, J.J.2
  • 153
    • 0028980231 scopus 로고
    • Protonation dynamics of the α-toxin ion channel from spectral analysis of ph dependent current fluctuations
    • J. J. Kasianowicz S. M. Bezrukov Protonation dynamics of the α-toxin ion channel from spectral analysis of ph dependent current fluctuations Biophys. J. 1995 69 94 105
    • (1995) Biophys. J. , vol.69 , pp. 94-105
    • Kasianowicz, J.J.1    Bezrukov, S.M.2
  • 154
    • 33846828514 scopus 로고    scopus 로고
    • Ion conduction through MscS as determined by electrophysiology and simulation
    • M. Sotomayor V. Vasquez E. Perozo K. Schulten Ion conduction through MscS as determined by electrophysiology and simulation Biophys. J. 2007 92 886 902
    • (2007) Biophys. J. , vol.92 , pp. 886-902
    • Sotomayor, M.1    Vasquez, V.2    Perozo, E.3    Schulten, K.4
  • 155
    • 65349156366 scopus 로고    scopus 로고
    • Ionic current rectification through silica nanopores
    • E. R. Cruz-Chu A. Aksimentiev K. Schulten Ionic current rectification through silica nanopores J. Phys. Chem. C 2009 113 1850 1862
    • (2009) J. Phys. Chem. C , vol.113 , pp. 1850-1862
    • Cruz-Chu, E.R.1    Aksimentiev, A.2    Schulten, K.3
  • 157
    • 58149299894 scopus 로고    scopus 로고
    • DNA translocation governed by interactions with solid-state nanopores
    • M. Wanunu J. Sutin B.M. A. Chow A. Meller DNA translocation governed by interactions with solid-state nanopores Biophys. J. 2008 95 4716 4725
    • (2008) Biophys. J. , vol.95 , pp. 4716-4725
    • Wanunu, M.1    Sutin, J.2    M, B.3    Chow, A.4    Meller, A.5
  • 159
    • 1142310690 scopus 로고    scopus 로고
    • Diffusion and electrophoretic mobility of single-stranded RNA from molecular dynamics simulations
    • I. C. Yeh G. Hummer Diffusion and electrophoretic mobility of single-stranded RNA from molecular dynamics simulations Biophys. J. 2004 86 681 689
    • (2004) Biophys. J. , vol.86 , pp. 681-689
    • Yeh, I.C.1    Hummer, G.2
  • 160
    • 41149161730 scopus 로고    scopus 로고
    • Stretching and unzipping nucleic acid hairpins using a synthetic nanopore
    • Q. Zhao J. Comer V. Dimitrov A. Aksimentiev G. Timp Stretching and unzipping nucleic acid hairpins using a synthetic nanopore Nucleic Acids Res. 2008 36 1532 1541
    • (2008) Nucleic Acids Res. , vol.36 , pp. 1532-1541
    • Zhao, Q.1    Comer, J.2    Dimitrov, V.3    Aksimentiev, A.4    Timp, G.5
  • 162
    • 0035831563 scopus 로고    scopus 로고
    • Voltage-driven dna translocations through a nanopore
    • A. Meller L. Nivon D. Branton Voltage-driven dna translocations through a nanopore Phys. Rev. Lett. 2001 86 3435 3438
    • (2001) Phys. Rev. Lett. , vol.86 , pp. 3435-3438
    • Meller, A.1    Nivon, L.2    Branton, D.3
  • 163
    • 34848830419 scopus 로고    scopus 로고
    • Exploring transmembrane transport through alpha-hemolysin with grid-based steered molecular dynamics
    • D. B. Wells V. Abramkina A. Aksimentiev Exploring transmembrane transport through alpha-hemolysin with grid-based steered molecular dynamics J. Chem. Phys. 2007 127 125101
    • (2007) J. Chem. Phys. , vol.127 , pp. 125101
    • Wells, D.B.1    Abramkina, V.2    Aksimentiev, A.3
  • 164
    • 0030834853 scopus 로고    scopus 로고
    • Binding pathway of retinal to bacterio-opsin: A prediction by molecular dynamics simulations
    • B. Isralewitz S. Izrailev K. Schulten Binding pathway of retinal to bacterio-opsin: A prediction by molecular dynamics simulations Biophys. J. 1997 73 2972 2979
    • (1997) Biophys. J. , vol.73 , pp. 2972-2979
    • Isralewitz, B.1    Izrailev, S.2    Schulten, K.3
  • 165
    • 0030059225 scopus 로고    scopus 로고
    • Ligand binding and molecular mechanics calculation of the streptavidin-biotin rupture force
    • H. Grubmüller B. Heymann P. Tavan Ligand binding and molecular mechanics calculation of the streptavidin-biotin rupture force Science 1996 271 997 999
    • (1996) Science , vol.271 , pp. 997-999
    • Grubmüller, H.1    Heymann, B.2    Tavan, P.3
  • 166
    • 0031880829 scopus 로고    scopus 로고
    • Adhesion forces of lipids in a phospholipid membrane studied by molecular dynamics simulations
    • S.-J. Marrink O. Berger P. Tieleman F. Jähnig Adhesion forces of lipids in a phospholipid membrane studied by molecular dynamics simulations Biophys. J. 1998 74 931 943
    • (1998) Biophys. J. , vol.74 , pp. 931-943
    • Marrink, S.-J.1    Berger, O.2    Tieleman, P.3    Jähnig, F.4
  • 167
    • 4243754128 scopus 로고    scopus 로고
    • Nonequilibrium equality for free energy differences
    • C. Jarzynski Nonequilibrium equality for free energy differences Phys. Rev. Lett. 1997 78 2690 2693
    • (1997) Phys. Rev. Lett. , vol.78 , pp. 2690-2693
    • Jarzynski, C.1
  • 168
    • 4143087050 scopus 로고    scopus 로고
    • Calculating potentials of mean force from steered molecular dynamics simulations
    • S. Park K. Schulten Calculating potentials of mean force from steered molecular dynamics simulations J. Chem. Phys. 2004 120 5946 5961
    • (2004) J. Chem. Phys. , vol.120 , pp. 5946-5961
    • Park, S.1    Schulten, K.2
  • 169
    • 23044496908 scopus 로고    scopus 로고
    • What makes an aquaporin a glycerol channel: A comparative study of AqpZ and GlpF
    • Y. Wang K. Schulten E. Tajkhorshid What makes an aquaporin a glycerol channel: A comparative study of AqpZ and GlpF Structure 2005 13 1107 1118
    • (2005) Structure , vol.13 , pp. 1107-1118
    • Wang, Y.1    Schulten, K.2    Tajkhorshid, E.3
  • 170
    • 33646271115 scopus 로고    scopus 로고
    • Molecular dynamics studies of the archaeal translocon
    • J. Gumbart K. Schulten Molecular dynamics studies of the archaeal translocon Biophys. J. 2006 90 2356 2367
    • (2006) Biophys. J. , vol.90 , pp. 2356-2367
    • Gumbart, J.1    Schulten, K.2
  • 171
    • 4444348664 scopus 로고    scopus 로고
    • DNA-mediated fluctuations in ionic current through silicon oxide nanopore channels
    • H. Chang F. Kosari G. Andreadakis M. A. Alam G. Vasmatzis R. Bashir DNA-mediated fluctuations in ionic current through silicon oxide nanopore channels Nano Lett. 2004 4 1551 1556
    • (2004) Nano Lett. , vol.4 , pp. 1551-1556
    • Chang, H.1    Kosari, F.2    Andreadakis, G.3    Alam, M.A.4    Vasmatzis, G.5    Bashir, R.6
  • 172
    • 31544471731 scopus 로고    scopus 로고
    • Salt dependence of ion transport and DNA translocation through solid-state nanopores
    • R. M. M. Smeets U. F. Keyser D. Krapf M. Y. Wu N. H. Dekker C. Dekker Salt dependence of ion transport and DNA translocation through solid-state nanopores Nano Lett. 2006 6 89 95
    • (2006) Nano Lett. , vol.6 , pp. 89-95
    • Smeets, R.M.M.1    Keyser, U.F.2    Krapf, D.3    Wu, M.Y.4    Dekker, N.H.5    Dekker, C.6
  • 173
    • 33751266937 scopus 로고    scopus 로고
    • Water-silica force field for simulating nanodevices
    • E. R. Cruz-Chu A. Aksimentiev K. Schulten Water-silica force field for simulating nanodevices J. Phys. Chem. B 2006 110 21497 21508
    • (2006) J. Phys. Chem. B , vol.110 , pp. 21497-21508
    • Cruz-Chu, E.R.1    Aksimentiev, A.2    Schulten, K.3
  • 174
    • 0037381879 scopus 로고    scopus 로고
    • Dynamics of DNA molecules in a membrane channel probed by active control techniques
    • M. Bates M. Burns A. Meller Dynamics of DNA molecules in a membrane channel probed by active control techniques Biophys. J. 2003 84 2366 2372
    • (2003) Biophys. J. , vol.84 , pp. 2366-2372
    • Bates, M.1    Burns, M.2    Meller, A.3
  • 175
    • 3042736845 scopus 로고    scopus 로고
    • A nanosensor for transmembrane capture and identification of single nucleic acid molecules
    • J. Nakane M. Wiggin A. Marziali A nanosensor for transmembrane capture and identification of single nucleic acid molecules Biophys. J. 2004 87 615 621
    • (2004) Biophys. J. , vol.87 , pp. 615-621
    • Nakane, J.1    Wiggin, M.2    Marziali, A.3
  • 176
    • 56149084132 scopus 로고    scopus 로고
    • Electromechanical unzipping of individual DNA molecules using synthetic sub-2 nm pores
    • B. McNally M. Wanunu A. Meller Electromechanical unzipping of individual DNA molecules using synthetic sub-2 nm pores Nano Lett. 2008 8 3418 3422
    • (2008) Nano Lett. , vol.8 , pp. 3418-3422
    • McNally, B.1    Wanunu, M.2    Meller, A.3
  • 177
    • 33845556449 scopus 로고
    • Limiting laws and counterion condensation in polyelectrolyte solutions
    • G. Manning Limiting laws and counterion condensation in polyelectrolyte solutions J. Phys. Chem. 1981 85 1506
    • (1981) J. Phys. Chem. , vol.85 , pp. 1506
    • Manning, G.1
  • 178
    • 6244226478 scopus 로고    scopus 로고
    • Simultaneous action of electric fields and nonelectric forces on a polyelectrolyte: Motion and deformation
    • D. Long J. L. Viovy A. Ajdari Simultaneous action of electric fields and nonelectric forces on a polyelectrolyte: Motion and deformation Phys. Rev. Lett. 1996 76 3858
    • (1996) Phys. Rev. Lett. , vol.76 , pp. 3858
    • Long, D.1    Viovy, J.L.2    Ajdari, A.3
  • 180
    • 37649011024 scopus 로고    scopus 로고
    • Electrokinetic-flow-induced viscous drag on a tethered dna inside a nanopore
    • S. Ghosal Electrokinetic-flow-induced viscous drag on a tethered dna inside a nanopore Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 2007 76 061916
    • (2007) Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. , vol.76 , pp. 061916
    • Ghosal, S.1
  • 181
  • 182
    • 67651177796 scopus 로고    scopus 로고
    • Enhancement of charged macromolecule capture by nanopores in a salt gradient
    • T. Chou Enhancement of charged macromolecule capture by nanopores in a salt gradient J. Chem. Phys. 2009 131 034703
    • (2009) J. Chem. Phys. , vol.131 , pp. 034703
    • Chou, T.1
  • 183
    • 76649116514 scopus 로고    scopus 로고
    • Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient
    • 10.1038/nnano.2009.379
    • M. Wanunu W. Morrison Y. Rabin A. Y. Grosberg A. Meller Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient Nat. Nanotechnol. 2009 10.1038/nnano.2009.379
    • (2009) Nat. Nanotechnol.
    • Wanunu, M.1    Morrison, W.2    Rabin, Y.3    Grosberg, A.Y.4    Meller, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.