Applying plant DNA barcodes to identify species of Parnassia (Parnassiaceae)

Molecular Ecology Resources

Volumn 12, Issue 2, 2012, Pages 267-275

  Yang, Jun Bo ^a   Wang, Yi Ping ^b   Möller, Michael ^c   Gao, Lian Ming ^a   Wu, Ding ^b,d  

^a KUNMING INSTITUTE OF BOTANY   (China)

^b JIANGXI AGRICULTURAL UNIVERSITY   (China)

^c ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^d Jingdezhen University   (China)

Author keywords

Cryptic species; DNA barcoding; Parnassia; Species identification; Taxonomy

Indexed keywords

PLANT DNA;

ARTICLE; CELASTRACEAE; CLASSIFICATION; DNA BARCODING; EVALUATION; GENETICS; METHODOLOGY; PHYLOGENY;

CELASTRACEAE; DNA BARCODING, TAXONOMIC; DNA, PLANT; PHYLOGENY;

PARNASSIA; PARNASSIACEAE;

EID: 84856762913     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03095.x     Document Type: Article

References (47)

1. Alvarez I, Wendel JF (2003) Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetic Evolution, 29, 417-434.
2. CBOL Plant Working Group (2009) A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America, 106, 12794-12797.
3. Chase MW, Cowan RS, Hollingsworth PM et al. (2007) A proposal for a standardised protocol to barcode all land plants. Taxon, 56, 295-299.
4. China Plant BOL Group (2011) Comparative analysis of a large dataset indicates that ITS should be incorporated into the core barcode for seed plants. Proceedings of the National Academy of Sciences of the United States of America, 108, 19641-19646.
5. DeSalle R (2006) Species discovery versus species identification in DNA barcoding efforts: response to Rubinoff. Conservation Biology, 20, 1545-1547.
6. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochemical Bulletin, 19, 11-15.
7. Drude O (1875) Über die Blüthengestaltung und die Verwandtschaftsverhältnisse des Genus Parnassia, nebst einer systematischen Revision seiner Arten. Linnaea, 39, 239-324.
8. Engler A (1930) Saxifragaceae. In: Die Natürlichen Pflanzenfamillien (eds Engler A, Prantl K), vol. 18(a), pp. 178-182. W Englmann, Leipzig.
9. Fazekas AJ, Burgess KS, Kesanakurti PR et al. (2008) Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS ONE, 3, e2802.
10. Franchet A (1897) Les Parnassia de I'Asie Orientale. Bulletin de la Société royale de Botanique de Belgique, 44, 244-263.
11. Grierson AJC (1987) Parnassiaceae. In: Flora of Bhutan (eds Grierson AJC, Long DG), vol. 1, pp. 515-517. Royal Botanic Garden, Edinburgh.
12. Gu C, Hultgård UM (2001) Parnassia. In: Flora of China (eds Wu C-Y, Raven PH), vol. 8, pp. 95-118. Science Press, Beijing; Missouri Bot. Garden Press, St Louis, MO.
13. Hajibabaei M, Singer GAC, Hebert PDN, Hickey DA (2007) DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics, 23, 167-172.
14. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
15. Handel-Mazzetti H (1941) Die Chinesischen Parnassia-Arten. Oesterreichische Botanische Zeitschrift, 90, 127-136.
16. Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, Series B: Biological Science, 270, 313-321.
17. Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM (2004) Identification of birds through DNA barcodes. PLoS Biology, 2, e312.
18. Hollingsworth PM (2008) DNA barcoding plants in biodiversity hot spots: Progress and outstanding questions. Heredity, 101, 1-2.
19. Hollingsworth ML, Clark A, Forrest LL et al. (2009) Selecting barcoding loci for plants: evaluation of seven candidate loci with species level sampling in three divergent groups of land plants. Molecular Ecology Resources, 9, 439-457.
20. Hollingsworth PM, Graham SW, Little DP (2011) Choosing and using a plant DNA barcode. PLoS ONE, 6, e19254.
21. Hooker JD, Thomson T (1858) Praecursores ad Floram Indicam. Botanical Journal of the Linnean Society, 2, 54.
22. Hultgård UM (1987) Parnassia palustris L. in Scandinavia. Acat Universitatis Upsaliensis Symbolae Botanicae Upsalienses, 28, 1-128.
23. Korta J (1972) Anatomical analysis of Parnassia palustris L. Acta Biologica Cracoviensia, 15, 31-37.
24. Kress WJ, Erickson DL (2007) A two-locus global DNA barcode for land plant: the coding rbcL gene complements the noncoding trnH-psbA spacer region. PLoS ONE, 2, e508.
25. Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. Proceedings of the National Academy of Sciences of the United States of America, 102, 8369-8374.
26. Ku TC (1987) A revision of the genus Parnassia (Saxifragaceae) in China. Bulletin of Botanical Research, 7, 1-59.
27. Ku TC (1995) Parnassioideae Engl. In: Flora Reipublica Popularis Sinicae (eds Lu L, Hwang S), vol. 35, pp. 1-66. Science Press, Beijing.
28. Lahaye R, Van der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G (2008) DNA barcoding the floras of biodiversity hotspots. Proceeding of the National Academy of Science of the United States of America, 105, 2923-2928.
29. Li DZ, Liu JQ, Chen ZD et al. (2011) Plant DNA barcoding in China. Journal of Systematics and Evolution, 49, 165-168.
30. Liu J, Möller M, Gao LM, Zhang DQ, Li DZ (2011) DNA barcoding for the discrimination of Eurasian yews (Taxus L., Taxaceae) and the discovery of cryptic species. Molecular Ecology Resources, 11, 89-100.
31. Meier RS, Kwong S, Vaidya G, Ng PKL (2006) DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Systematic Biology, 55, 715-728.
32. Meyer CP, Paulay G (2005) DNA barcoding: error rates based on comprehensive sampling. PLoS Biology, 3, e422.
33. Nasir E, Ali SI (1972) Parnassiaceae. In: Flora of West Pakistan (ed. Stewaet RR), pp. 339-340. Department of Botany-Taxonomy, University of Karachi, Karachi.
34. Pennisi E (2007) Taxonomy. Wanted: a barcode for plants. Science, 318, 190-191.
35. Phillips RB (1982) Systematics of Parnassia (Parnassiaceae): generic overview and revision of North American taxa. PhD Thesis, University of California, Berkerley, CA.
36. Ren BQ, Xiang XG, Chen ZD (2010) Species identification of Alnus (Betulaceae) using nrDNA and cpDNA genetic markers. Molecular Ecology Resources, 10, 594-605.
37. Savolainen V, Cowan RS, Vogler AP, Roderick GK, Lane R (2005) Towards writing the encyclopaedia of life: an introduction to DNA barcoding. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 360, 1805-1811.
38. Simmons MP (2004) Parnassiaceae. In: The Families and Genera of Vascular Plants (ed. Kubitzki K), pp. 291-296. Springer Verlag, Berlin.
39. Smith MA, Fisher BL, Hebert PDN (2005) DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 360, 1825-1834.
40. Starr JR, Naczi RFC, Chouinard BN (2009) Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae). Molecular Ecology Resources, 9, 151-163.
41. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599.
42. Thompson JD, Gibson TJ, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
43. Wien ES (1966) Parnassiaceae. In: Flora Iranica (ed. Rechinger KH), pp. 1-4. Lfg. Cont. 20.
44. Will KW, Mishler BD, Wheeler QD (2005) The perils of DNA barcoding and the need for integrative taxonomy. Systematic Biology, 54, 844-851.
45. Wu ZY, Lu AM, Tang YC, Chen ZD, Li DZ (2003) The Families and Genera of Angiosperms in China, a Comprehensive Analysis. Science Press, Beijing, pp. 649-654.
46. Zhang LB, Simmons MP (2006) Phylogeny and delimitation of the Celastrales inferred from nuclear and plastid genes. Systematic Botany, 31, 122-137.
47. Zhou X, Adamowicz SJ, Jacobus LM, Dewalt RE, Hebert PDN (2009) Towards a comprehensive barcode library for arctic life-Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada. Frontiers in Zoology, 6, 30.