Identification of molecular markers for DNA barcoding in the Aphidiinae (Hym. Braconidae)

Molecular Ecology Resources

Volumn 12, Issue 2, 2012, Pages 197-208

  Derocles, Stephane A P ^a   Le Ralec, Anne ^a   Plantegenest, Manuel ^a   Chaubet, Bernard ^a   Cruaud, Corinne ^c   Cruaud, Astrid ^b   Rasplus, Jean Yves ^b  

^a AGROCAMPUS OUEST   (France)

^b CENTRE DE BIOLOGIE ET DE GESTION DES POPULATIONS   (France)

^c CENTRE NATIONAL DE SÉQUENÇAGE   (France)

Author keywords

Aphid; Cytochrome c oxydase I; DNA barcoding; Introgression; Long wavelength rhodopsin; Parasitoid

Indexed keywords

CYTOCHROME C OXIDASE; INSECT PROTEIN;

ANIMAL; APHID; ARTICLE; CLASSIFICATION; DNA BARCODING; EVALUATION; GENETIC MARKER; GENETICS; METHODOLOGY; MOLECULAR GENETICS; PHYLOGENY;

ANIMALS; APHIDS; DNA BARCODING, TAXONOMIC; ELECTRON TRANSPORT COMPLEX IV; GENETIC MARKERS; INSECT PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY;

APHIDIDAE; APHIDIINAE; APHIDIUS; APHIDIUS ERVI; APHIDIUS MICROLOPHII; APHIDIUS SALICIS; BRACONIDAE; LYSIPHLEBUS CONFUSUS; LYSIPHLEBUS FABARUM;

EID: 84856727806     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03083.x     Document Type: Article

References (58)

1. Barahoei H, Madjdzadeh SM, Mehrparvar M (2011) Morphometric differentiation of five biotypes of Lysiphlebus fabarum (Marshall) (Hymenoptera: Braconidae: Aphidiinae) in Iran. Zootaxa, 2745, 43-52.
2. Belshaw R, Quicke DLJ (1997) A molecular phylogeny of the aphidiinae (Hymenoptera: Braconidae). Molecular Phylogenetics and Evolution, 7, 281-293.
3. Britton T, Anderson CL, Jacquet D, Lundqvist S, Bremer K (2007) Estimating divergence times in large phylogenetic trees. Systematic Biology, 56, 741-752.
4. Cruaud A, Jabbour-Zahab R, Genson G et al. (2010) Laying the foundations for a new classification of Agaonidae (Hymenoptera: Chalcidoidea), a multilocus phylogenetic approach. Cladistics, 26, 359-387.
5. De Conti BF, Bueno VHP, Sampaio MV (2008) The parasitoid Praon volucre (Hymenoptera : Braconidae : Aphidiinae) as a potential biological control agent of the aphid Uroleucon ambrosiae (Hemiptera : Aphididae) on lettuce in Brazil. European Journal of Entomology, 105, 485-487.
6. Desneux N, Stary P, Delebecque CJ et al. (2009) Cryptic species of parasitoids attacking the Soybean Aphid (Hemiptera: Aphididae) in Asia: Bonodoxys communis and Binodoxys koreanus (Hymenoptera: Braconidae: Aphidiinae). Annals of the Entomological Society of America, 102, 925-936.
7. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-297.
8. Frézal L, Leblois R (2008) Four years of DNA barcoding: current advances and prospects. Infection, Genetics and Evolution, 8, 727-736.
9. Garantonakis N, Perdikis D, Lykouressis D, Kourti A, Gkouvitsas T (2009) Studies on the identity of the parasitoids Aphidius colemani and Aphidius transcaspicus (Hymenoptera: Braconidae). European Journal of Entomology, 106, 491-498.
10. Gardenfors U (1986) Taxonomic and biological revision of Palearctic Ephedrus Haliday (Hymenoptera: Braconidae, Aphidiinae). Entomologica Scandinavica, 27, 95.
11. Gariepy T, Kuhlmann U, Gillott C, Erlandson M (2008) A large-scale comparison of conventional and molecular methods for the evaluation of host-parasitoid associations in non-target risk-assessment studies. Journal of Applied Ecology, 45, 708-715.
12. Gotelli NJ (2004) A taxonomic wish-list for community ecology. Philosophical Transactions of the Royal Society of London (B), 359, 585-597.
13. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences of the United States of America, 103, 968-971.
14. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
15. Hawkins BA, Cornell HV (1994) Maximum parasitism rates and successful biological control. Science, 266, 1886.
16. Hebert PDN, Gregory TR (2005) The promise of DNA barcoding for taxonomy. Systematic biology, 54, 852-859.
17. Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM (2004a) Identification of birds through DNA barcodes. PLOS Biology, 2, 312.
18. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004b) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences USA, 101, 14812-14817.
19. Hines HM, Cameron SA, Williams PH (2006) Molecular phylogeny of the bumble bee subgenus Pyrobombus (Hymenoptera : Apidae : Bombus) with insights into gene utility for lower-level analysis. Invertebrate systematics, 20, 289-303.
20. Hunter SJ, Goodall TI, Walsh KA, Owen R, Day JC (2008) Nondestructive DNA extraction from blackflies (Diptera: Simuliidae): retaining voucher specimens for DNA barcoding projects. Molecular Ecology Resources, 8, 56-61.
21. Hurst GDD, Jiggins FM (2005) Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proceedings of the Royal Society B, 272, 1525-1534.
22. Kavallieratos NG, Lykouressis DP, Sarlis GP, Stathas GJ, Segovia AS, Athanassiou CG (2001) The Aphidiinae (Hymenoptera: Ichneumonoidea: Braconidae) of Greece. Phytoparasitica, 29, 306-340.
23. Kavallieratos NG, Tomanovic Z, Stary P et al. (2004) A survey of aphid parasitoids (Hymenoptera: Braconidae: Aphidiinae) of Southeastern Europe and their aphid-plant associations. Applied Entomology and Zoology, 39, 527-563.
24. Kavallieratos NG, Tomanovic Z, Stary P et al. (2005) Praon Haliday (Hymenoptera: Braconidae: Aphidiinae) of Southeastern Europe: key, host range and phylogenetic relationships. Zoologischer Anzeiger, 243, 181-209.
25. Linares MC, Soto-Calderón ID, Lees DC, Anthony NM (2009) High mitochondrial diversity in geographically widespread butterflies of Madagascar: a test of the DNA barcoding approach. Molecular Phylogenetics and Evolution, 50, 485-495.
26. Linnen CR, Farrell BD (2008) Phylogenetic analysis of nuclear and mitochondrial genes reveals evolutionary relationships and mitochondrial introgression in the sertifer species group of the genus Neodiprion (Hymenoptera : Diprionidae). Molecular Phylogenetics and Evolution, 48, 240-257.
27. Lucky A, Sarnat EM (2010) Biogeography and diversification of the Pacific ant genus Lordomyrma Emery. Journal of Biogeography, 37, 624-634.
28. Mardulyn P, Cameron SA (1999) The major opsin in bees (Insecta: Hymenoptera): a promising nuclear gene for higher level phylogenetics. Molecular Phylogenetics and Evolution, 12, 168-176.
29. Monti MM, Nappo AG, Giorgini M (2005) Molecular characterization of closely related species in the parasitic genus Encarsia (Hymenoptera: Aphelinidae) based on the mitochondrial cytochrome oxidase subunit I gene. Bulletin of Entomological Research, 95, 401-408.
30. Nylander JAA (2004) MrAIC.pl. Program distributed by the author. Ver. 1.4.3. Evolutionary Biology Centre, Uppsala University, Sweden. Available at:
31. Paradis E, Claude J, Strimmer K (2004) APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics, 20, 289-290.
32. Pons J, Barraclough TG, Gomez-Zurita J et al. (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology, 55, 595-609.
33. Praz CJ, Muller A, Danforth BN, Griswold TL, Widmer A, Dorn S (2008) Phylogeny and biogeography of bees of the tribe Osmiini (Hymenoptera: Megachilidae). Molecular phylogenetics and evolution, 49, 185-197.
34. Rohland N, Siedel H, Hofreiter M (2004) Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens. BioTechniques, 36, 814.
35. Rowley DL, Coddington JA, Gates MW et al. (2007) Vouchering DNA-barcoded specimens: test of a nondestructive extraction protocol for terrestrial arthropods. Molecular Ecology Resources, 7, 915-924.
36. Sanchis A, Michelena JM, Latorre A, Quicke DLJ, Gardenfors U, Belshaw R (2001) The phylogenetic analysis of variable-length sequence data: elongation factor-1a introns in European populations of the parasitoid wasp genus Pauesia (Hymenoptera: Braconidae: Aphidiinae). Molecular Ecology Resources, 18, 1117-1131.
37. Santos AMC, Besnard G, Quicke DLJ (2011) Applying DNA barcoding for the study of geographical variation in host-parasitoid interactions. Molecular Ecology Resources, 11, 46-59.
38. Sha ZL, Zhu CD, Murphy RW, Huang DW (2007) Diglyphus isaea (Hymenoptera: Eulophidae): a probable complex of cryptic species that forms an important biological control agent of agromyzid leaf miners. Journal of Zoological Systematics and Evolutionary Research, 45, 128-135.
39. Shi M, Chen XX, van Achterberg C (2005) Phylogenetic relationships among the Braconidae (Hymenoptera: Ichneumonoidea) inferred from partial 16S rDNA, 28S rDNA D2, 18S rDNA gene sequences and morphological characters. Molecular Phylogenetics and Evolution, 37, 104-116.
40. Smith MA, Woodley NE, Janzen DH, Hallwachs W, Hebert PDN (2006) DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proceedings of the National Academy of Sciences USA, 103, 3657-3662.
41. Smith MA, Woodley NE, Janzen DH, Hallwachs W, Hebert PDN (2007) DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists. Proceedings of the National Academy of Sciences USA, 104, 4967-4972.
42. Smith MA, Rodriguez JJ, Whitfield JB et al. (2008) Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections. Proceedings of the National Academy of Sciences USA, 105, 12359-12364.
43. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
44. Stary P (1973) A review of the Aphidius-species (Hymenoptera, Aphidiidae) of Europe. Annotationes Zoologicae et Botanicae, 84, 85.
45. Stary P, Remaudière G, Leclant F (1977) Nouveaux complements sur les Aphidiides (Hym.) de France et leurs hôtes. Annals de la Société Entomologiques de France, 13, 165-184.
46. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599.
47. Tan DSH, Ang Y, Lim GS, Ismail MRFB, Meier R (2009) From 'cryptic species' to integrative taxonomy: an iterative process involving DNA sequences, morphology, and behaviour leads to the resurrection of Sepsis pyrrhosoma (Sepsidae: Diptera). Zoologica Scripta, 39, 51-61.
48. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
49. Tomanovic Z, Kavallieratos NG (2002) Trioxys Haliday (Hymenoptera: Braconidae: Aphidiinae) in Serbia and Montenegro. Acta entomologica serbica, 7, 67-81.
50. Tomanovic Z, Kavallieratos NG, Stary P et al. (2003) Aphidius Nees aphid parasitoids (Hymenoptera, Braconidae, Aphidiinae) in Serbia and Montenegro: tritrophic associations and key. Acta Entomologica Serbica, 8, 15-39.
51. Tomanovic Z, Petrovic A, Stary P, Kavallieratos NG (2007a) Monoctonus haliday, Falciconus Mackauer and Harkeria Cameron (Hymenoptera, Braconidae, Aphidiinae) in Serbia and Montenegro: tritrophic associations and key. Acto Entomologica serbica, 12, 45-54.
52. Tomanovic Z, Rakhshani E, Stary P et al. (2007b) Phylogenetic relationships between the genera Aphidius and Lysaphidus (Hym. Braconidae: Aphidiinae) with description of Aphidius iranicus sp. nov. Canadian Entomologist, 139, 297-307.
53. Tomanovic Z, Petrovic A, Kavallieratos NG, Stary P, Ivo Toševski I, Bogdanovic AM (2009) Areopraon chaitophori n. sp. (Hymenoptera: Braconidae: Aphidiinae) associated with Chaitophorus leucomelas Koch on poplars, with a key for European Areopraon Mackauer species. Annales de la Société Entomologique Française, 45, 187-192.
54. Tomic M, Tomanovic Z, Kavallieratos NG et al. (2005) Morphological variability of several biotypes of Ephedrus plagiator (Nees, 1811) (Hymenoptera: Braconidae: Aphidiinae) and description of a new species. Zoologischer Anzeiger, 244, 153-162.
55. Traugott M, Symondson WOC (2008) Molecular analysis of predation on parasitized hosts. Bulletin of Entomological Research, 98, 223-231.
56. Traugott M, Bell JR, Broad GR, Powell W, Van Veen FF (2008) Endoparasitism in cereal aphids: molecular analysis of a whole parasitoid community. Molecular Ecology, 17, 3928-3938.
57. Valentini A, Pompanon F, Taberlet P (2009) Barcoding for ecologist. Trends in ecology and evolution, 24, 110-117.
58. Zikic V, Tomanovic Z, Ivanovic A et al. (2009) Morphological characterization of Ephedrus persicae biotypes (Hymenoptera: Braconidae: Aphidiinae) in the palaearctic. Annals of the Entomological Society of America, 102, 223-231.