Proteomic comparison of two invasive polychaete species and their naturally occurring F 1-hybrids

Journal of Proteome Research

Volumn 11, Issue 2, 2012, Pages 897-905

  Blank, Miriam ^a   Mikkat, Stefan ^b   Verleih, Marieke ^c   Bastrop, Ralf ^b  

^a UNIVERSITY OF HAMBURG   (Germany)

^b UNIVERSITY OF ROSTOCK   (Germany)

^c LEIBNIZ INSTITUTE FOR FARM ANIMAL BIOLOGY FBN   (Germany)

Author keywords

2 DE; animal proteomics; cross species identification; hybridization; Marenzelleria; mass spectrometry; sibling species; spionids

Indexed keywords

ACTIN 1; ACTIN 5C; ADENOSYLHOMOCYSTEINASE B; ALPHA ACTININ; ATP SYNTHASE SUBUNIT BETA; CYTOPLASMIC INTERMEDIATE FILAMENT PROTEIN; ENOLASE; GELSOLIN LIKE PROTEIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; HEAT SHOCK PROTEIN 70; MICROORGANISM PROTEIN; PEROXIREDOXIN 1; PHOSPHOGLYCERATE KINASE; PROBABLE ADENYLATE KINASE ISOENZYME; PROPIONYL COA CARBOXYLASE ALPHA CHAIN; TROPONIN C; TUBULIN ALPHA 1B CHAIN; TUBULIN BETA 2C CHAIN; UNCLASSIFIED DRUG; VALOSIN CONTAINING PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; HYBRID; HYBRIDIZATION; MARENZELLERIA NEGLECTA; MARENZELLERIA VIRIDIS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PEPTIDE MAPPING; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; TWO DIMENSIONAL POLYACRYLAMIDE GEL ELECTROPHORESIS; WORM;

ANIMALS; DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HYBRIDIZATION, GENETIC; INTRODUCED SPECIES; POLYCHAETA; PROTEOME; PROTEOMICS; SPECIES SPECIFICITY;

ANIMALIA; MARENZELLERIA; MARENZELLERIA NEGLECTA; MARENZELLERIA VIRIDIS; POLYCHAETA; SPIONIDA;

EID: 84856667409     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr200710z     Document Type: Article

References (50)

1. Essink, K.; Kleef, H. L. Distribution and life cycle of the North American spionid polychaete Marenzelleria viridis (Verrill, 1873) in the Ems estuary Neth. J. Aquat. Ecol. 1993, 27, 237-246
2. Bastrop, R.; Jürss, K.; Sturmbauer, C. Cryptic species in a marine polychaete and their independent introduction from North America to Europe Mol. Biol. Evol. 1998, 15, 97-103
3. Bastrop, R.; Blank, M. Multiple invasions - A polychaete genus enters the Baltic Sea Biol. Invasions 2006, 8, 1195-1200
4. Blank, M.; Bastrop, R.; Jürss, K. Stress protein response in two sibling species of Marenzelleria (Polychaeta: Spionidae): Is there an influence of acclimation salinity? Mar. Biol. 2006, 144, 451-462
5. Blank, M.; Laine, A. O.; Jürss, K.; Bastrop, R. Molecular identification key based on PCR/RFLP for three polychaete sibling species of the genus Marenzelleria, and the species' current distribution in the Baltic Sea Helgol. Mar. Res. 2008, 62, 129-141
6. Blank, M.; Bastrop, R. Phylogeny of the mud worm genus Marenzelleria (Polychaeta, Spionidae) inferred from mitochondrial DNA sequences Zool. Scripta 2009, 38, 313-321
7. Blank, M.; Bastrop, R.; Röhner, M.; Jürss, K. Effect of salinity on spatial distribution and cell volume regulation in two sibling species of Marenzelleria (Polychaeta: Spionidae) Mar. Ecol. Prog. Ser. 2004, 271, 193-205
8. Bochert, R. Marenzelleria viridis (Polychaeta: Spionidae): a review of its reproduction Aquat. Ecol. 1997, 31, 163-175
9. Gardner, J. P. Hybridization in the sea Adv. Mar. Biol. 1997, 31, 1-78
10. Väinölä, R.; Hvilsom, M. M. Genetic divergence and a hybrid zone between Baltic and North Sea Mytilus populations (Mytilidae: Mollusca) Biol. J. Linn. Soc. 1991, 43, 127-148
11. Gosling, E. G. The Mussel Mytilus. Ecology, physiology, genetics, and culture. In Developments in aquaculture and fisheries science 25; Gosling, E., Ed; Elsevier: Amsterdam, NY, 1992.
12. Saavedra, C.; Stewart, D. T.; Stanwood, R. R.; Zouros, E. Species-specific segregation of gender-associated mitochondrial DNA types in an area where two mussel species (Mytilus edulis and M. trossulus) hybridize Genetics 1996, 143, 1359-1367
13. Riginos, C.; Cunningham, C. W. Local adaptation and species segregation in two mussel (Mytilus edulis x Mytilus trossulus) hybrid zones Mol. Ecol. 2005, 14, 381-400
14. Dowling, T. E.; Secor, C. L. The role of hybridization and introgression in the diversification of animals Annu. Rev. Ecol. Syst. 1997, 28, 593-619
15. Sikorski, A. V.; Bick, A. Revision of Marenzelleria Mesnil, 1896 (Spionidae, Polychaeta) SARSIA 2004, 89, 253-275
16. Bick, A. A new Spionidae (Polychaeta) from North Carolina, and a redescription of Marenzelleria wireni Augener, 1913, from Spitsbergen, with a key for all species of Marenzelleria Helgol. Mar. Res. 2005, 59, 265-272
17. Schiedek, D. Marenzelleria cf. viridis (Polychaeta: Spionidae) - ecophysiological adaptations to a life in the coastal waters of the Baltic Sea Aquat. Ecol. 1997, 31, 199-210
18. Jürss, K.; Röhner, M.; Bastrop, R. Enzyme activities and allozyme polymorphism in two genetic types (or sibling species) of the genus Marenzelleria (Polychaeta: Spionidae) in Europe Mar. Biol. 1999, 135, 489-496
19. Schiedek, D. Ecophysiological capability of Marenzelleria populations inhabiting North Sea estuaries: an overview Helgol. Mar. Res. 1998, 52, 373-382
20. Blank, M.; Fulda, S.; Bastrop, R.; Jürss, K. Variation in protein patterns within and among polychaete sibling species of the genus Marenzelleria (Spionidae): a preliminary survey Mar. Biol. 2005, 146, 943-950
21. López, J. L. Role of proteomics in taxonomy: the Mytilus complex as a model of study J. Chromatogr., B 2005, 815, 261-274
22. Calvo, E.; Flores-Romero, P.; Lopez, J. A.; Navas, A. Identification of proteins expressing differences among isolates of Meloidogyne spp. (Nematoda: Meloidogynidae) by nano-liquid chromatography coupled to ion-trap mass spectrometry J. Proteome Res. 2005, 4, 1017-1021
23. Martinez-Fernandez, M.; Rodriguez-Pineiro, A. M.; Oliveira, E.; La Paez Cadena, M.; de; Rolan-Alvarez, E. Proteomic comparison between two marine snail ecotypes reveals details about the biochemistry of adaptation J. Proteome Res. 2008, 7, 4926-4934
24. Dupont, S.; Wilson, K.; Obst, M.; Sköld, H.; Nakano, H.; Thorndyke, M. C. Marine ecological genomics: when genomics meets marine ecology Mar. Ecol.: Prog. Ser. 2007, 332, 257-273
25. Knowlton, N. Molecular genetic analyses of species boundaries in the sea Hydrobiologia 2000, 420, 73-90
26. Bastrop, R.; Röhner, M.; Sturmbauer, C.; Jürss, K. Where did Marenzelleria spp. (Polychaeta: Spionidae) in Europe come from? Aquat. Ecol. 1997, 31, 119-136
27. Bastrop, R.; Röhner, M.; Jürss, K. Are there two species of the polychaete genus Marenzelleria in Europe? Mar. Biol. 1995, 121, 509-516
28. Röhner, M.; Bastrop, R.; Jürss, K. Colonization of Europe by two American genetic types or species of the genus Marenzelleria (Polychaeta: Spionidae). An electrophoretic analysis of allozymes Mar. Biol. 1996, 127, 277-287
29. Röhner, M.; Bastrop, R.; Jürss, K. Genetic differences between two allopatric populations (or sibling species) of the polychaete genus Marenzelleria in Europe Comp. Biochem. Phys. B 1996, 114, 185-192
30. Mikkat, S.; Lorenz, P.; Scharf, C.; Yu, X.; Glocker, M. O.; Ibrahim, S. M. MS characterization of qualitative protein polymorphisms in the spinal cords of inbred mouse strains Proteomics 2010, 10, 1050-1062
31. Nordhoff, E.; Schürenberg, M.; Thiele, G.; Lübbert, C.; Kloeppel, K. D.; Theiss, D.; Lehrach, H.; Gobom, J. Sample preparation protocols for MALDI-MS of peptides and oligonucleotides using prestructured sample supports Int. J. Mass Spectrom. 2003, 226, 163-180
32. Alm, R.; Johansson, P.; Hjerno, K.; Emanuelsson, C.; Ringner, M.; Hakkinen, J. Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra J. Proteome Res. 2006, 5, 785-792
33. Shevchenko, A.; Sunyaev, S.; Loboda, A.; Shevchenko, A.; Bork, P.; Ens, W.; Standing, K. G. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching Anal. Chem. 2001, 73, 1917-1926
34. Diz, A. P.; Skibinski, D. O. Evolution of 2-DE protein patterns in a mussel hybrid zone Proteomics 2007, 7, 2111-2120
35. López, J. L.; Mosquera, E.; Fuentes, J.; Marina, A.; Vázquez, J.; Alvarez, G. Two-dimensional gel electrophoresis of Mytilus galloprovincialis: differences in protein expression between intertidal and cultured mussels Mar. Ecol.: Prog. Ser. 2001, 224, 149-156
36. López, J. L.; Marina, A.; Alvarez, G.; Vazquez, J. Application of proteomics for fast identification of species-specific peptides from marine species Proteomics 2002, 2, 1658-1665
37. Martinez-Fernandez, M.; La Cadena, M.; de; Rolan-Alvarez, E. The role of phenotypic plasticity on the proteome differences between two sympatric marine snail ecotypes adapted to distinct micro-habitats BMC Evol. Biol. 2010, 10, 65
38. Thiyagarajan, V.; Wong, T.; Qian, P. Y. 2D gel-based proteome and phosphoproteome analysis during larval metamorphosis in two major marine biofouling invertebrates J. Proteome Res 2009, 8, 2708-2719
39. Sun, J.; Zhang, Y.; Thiyagarajan, V.; Qian, P. Y.; Qiu, J.-W. Protein expression during the embryonic development of a gastropod Proteomics 2010, 10, 2701-2711
40. Habermann, B.; Oegema, J.; Sunyaev, S.; Shevchenko, A. The power and the limitations of cross-species protein identification by mass spectrometry-driven sequence similarity searches Mol. Cell. Proteomics 2004, 3, 238-249
41. Wang, H.; Zhang, H.; Wong, Y. H.; Voolstra, C.; Ravasi, T.; Bajic, V. B.; Qian, P.-Y. Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina Proteomics 2010, 10, 2972-2981
42. Mok, F. S.; Thiyagarajan, V.; Qian, P. Y. Proteomic analysis during larval development and metamorphosis of the spionid polychaete Pseudopolydora vexillosa Proteome Sci. 2009, 7, 44
43. Mary, J.; Rogniaux, H.; Rees, J. F.; Zal, F. Response of Alvinella pompejana to variable oxygen stress: a proteomic approach Proteomics 2010, 10, 2250-2258
44. Zhang, Y.; Sun, J.; Xiao, K.; Arellano, S. M.; Thiyagarajan, V.; Qian, P. Y. 2D gel-based multiplexed proteomic analysis during larval development and metamorphosis of the biofouling polychaete tubeworm Hydroides elegans J. Proteome Res. 2010, 9, 4851-4860
45. Ortea, I.; Canas, B.; Gallardo, J. M. Mass spectrometry characterization of species-specific peptides from arginine kinase for the identification of commercially relevant shrimp species J. Proteome Res. 2009, 8, 5356-5362
46. Wright, J. C.; Beynon, R. J.; Hubbard, S. J. Cross species proteomics Methods Mol. Biol. 2010, 604, 123-135
47. Kültz, D.; Fiol, D.; Valkova, N.; Gomez-Jiminez, S.; Chan, S. Y.; Lee, J. Applications of next generation sequencing in molecular ecology of non-model organisms J. Exp. Biol. 2007, 210, 1593-1601
48. Ekblom, R.; Galindo, J. Applications of next generation sequencing in molecular ecology of non-model organisms Heredity 2011, 107, 1-15
49. Barton, N. H.; Hewitt, G. M. Adaptation, speciation and hybrid zones Nature 1989, 341, 497-503
50. Jiggins, C. D.; Mallet, J. Bimodal hybrid zones and speciation Trends Ecol. Evol. 2000, 15, 250-255