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Volumn 10, Issue 16, 2010, Pages 2972-2981

Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina

Author keywords

Animal proteomics; Bugula neritina; Larval metamorphosis; Pyrosequencing; Transcriptome

Indexed keywords

COMPLEMENTARY DNA; PROTEOME; TRANSCRIPTOME;

EID: 77955620945     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000056     Document Type: Article
Times cited : (47)

References (53)
  • 1
    • 0033562159 scopus 로고    scopus 로고
    • Larval settlement of polychaetes
    • Qian, P. Y., Larval settlement of polychaetes. Hydrobiologia 1999, 402, 239-253.
    • (1999) Hydrobiologia , vol.402 , pp. 239-253
    • Qian, P.Y.1
  • 2
    • 33750951419 scopus 로고    scopus 로고
    • Signaling mechanisms underlying metamorphic transitions in animals
    • Heyland, A., Moroz, L. L., Signaling mechanisms underlying metamorphic transitions in animals. Integr. Comp. Biol. 2006, 46, 743-759.
    • (2006) Integr. Comp. Biol. , vol.46 , pp. 743-759
    • Heyland, A.1    Moroz, L.L.2
  • 3
    • 74649084090 scopus 로고    scopus 로고
    • Strategies for undertaking expressed sequence tag (EST) projects
    • Clifton, S. W., Mitreva, M., Strategies for undertaking expressed sequence tag (EST) projects. Methods Mol. Biol. 2009, 533, 13-32.
    • (2009) Methods Mol. Biol. , vol.533 , pp. 13-32
    • Clifton, S.W.1    Mitreva, M.2
  • 4
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies, M., Egholm, M., Altman, W. E., Attiya, S. et al., Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437, 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4
  • 5
    • 33748685014 scopus 로고    scopus 로고
    • Rapid and accurate pyrosequencing of angiosperm plastid genomes
    • Moore, M. J., Dhingra, A., Soltis, P. S., Shaw, R. et al., Rapid and accurate pyrosequencing of angiosperm plastid genomes. BMC Plant Biol. 2006, 6, 17.
    • (2006) BMC Plant Biol. , vol.6 , pp. 17
    • Moore, M.J.1    Dhingra, A.2    Soltis, P.S.3    Shaw, R.4
  • 6
    • 34250666153 scopus 로고    scopus 로고
    • Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing
    • Weber, A. P., Weber, K. L., Carr, K., Wilkerson, C., Ohlrogge, J. B., Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol. 2007, 144, 32-42.
    • (2007) Plant Physiol. , vol.144 , pp. 32-42
    • Weber, A.P.1    Weber, K.L.2    Carr, K.3    Wilkerson, C.4    Ohlrogge, J.B.5
  • 7
    • 35348932160 scopus 로고    scopus 로고
    • Wasp gene expression supports an evolutionary link between maternal behavior and eusociality
    • Toth, A. L., Varala, K., Newman, T. C., Miguez, F. E. et al., Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. Science 2007, 318, 441-444.
    • (2007) Science , vol.318 , pp. 441-444
    • Toth, A.L.1    Varala, K.2    Newman, T.C.3    Miguez, F.E.4
  • 8
    • 48249148300 scopus 로고    scopus 로고
    • Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags
    • Shin, H., Hirst, M., Bainbridge, M. N., Magrini, V. et al., Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags. BMC Biol. 2008, 6, 30.
    • (2008) BMC Biol. , vol.6 , pp. 30
    • Shin, H.1    Hirst, M.2    Bainbridge, M.N.3    Magrini, V.4
  • 9
    • 77949302709 scopus 로고    scopus 로고
    • Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing
    • Wheat, C. W., Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing. Genetica 2010, 134, 433-451.
    • (2010) Genetica , vol.134 , pp. 433-451
    • Wheat, C.W.1
  • 10
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • Vera, J. C., Wheat, C. W., Fescemyer, H. W., Frilander, M. J. et al., Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol. Ecol. 2008, 17, 1636-1647.
    • (2008) Mol. Ecol. , vol.17 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4
  • 11
    • 24144470553 scopus 로고    scopus 로고
    • Proteomic approach to probe for larval proteins of the mussel Mytilus gallo-provincialis
    • Lopez, J. L., Abalde, S. L., Fuentes, J., Proteomic approach to probe for larval proteins of the mussel Mytilus gallo-provincialis. Mar. Biotechnol. 2005, 7, 396-404.
    • (2005) Mar. Biotechnol. , vol.7 , pp. 396-404
    • Lopez, J.L.1    Abalde, S.L.2    Fuentes, J.3
  • 12
    • 49749105216 scopus 로고    scopus 로고
    • Proteomic analysis of larvae during development, attachment, and metamorphosis in the fouling barnacle, Balanus amphitrite
    • Thiyagarajan, V., Qian, P. Y., Proteomic analysis of larvae during development, attachment, and metamorphosis in the fouling barnacle, Balanus amphitrite. Proteomics 2008, 8, 3164-3172.
    • (2008) Proteomics , vol.8 , pp. 3164-3172
    • Thiyagarajan, V.1    Qian, P.Y.2
  • 13
    • 68549135403 scopus 로고    scopus 로고
    • Identification of novel functional differences in monocyte subsets using proteomic and transcriptomic methods
    • Zhao, C., Zhang, H., Wong, W. C., Sem, X. et al., Identification of novel functional differences in monocyte subsets using proteomic and transcriptomic methods. J. Proteome Res. 2009, 8, 4028-4038.
    • (2009) J. Proteome Res. , vol.8 , pp. 4028-4038
    • Zhao, C.1    Zhang, H.2    Wong, W.C.3    Sem, X.4
  • 14
    • 33744480776 scopus 로고    scopus 로고
    • Proteomic analysis of protein profiles during early development of the zebrafish, Danio rerio
    • Tay, T. L., Lin, Q., Seow, T. K., Tan, K. H. et al., Proteomic analysis of protein profiles during early development of the zebrafish, Danio rerio. Proteomics 2006, 6, 3176-3188.
    • (2006) Proteomics , vol.6 , pp. 3176-3188
    • Tay, T.L.1    Lin, Q.2    Seow, T.K.3    Tan, K.H.4
  • 15
    • 23044449799 scopus 로고    scopus 로고
    • Proteomic analysis of protein expression profiles during Caenorhabditis elegans development using two-dimensional difference gel electrophoresis
    • Tabuse, Y., Nabetani, T., Tsugita, A., Proteomic analysis of protein expression profiles during Caenorhabditis elegans development using two-dimensional difference gel electrophoresis. Proteomics 2005, 5, 2876-2891.
    • (2005) Proteomics , vol.5 , pp. 2876-2891
    • Tabuse, Y.1    Nabetani, T.2    Tsugita, A.3
  • 16
    • 34249689061 scopus 로고    scopus 로고
    • Differential recovery of membrane proteins after extraction by aqueous methanol and trifluoroethanol
    • Zhang, H., Lin, Q., Ponnusamy, S., Kothandaraman, N. et al., Differential recovery of membrane proteins after extraction by aqueous methanol and trifluoroethanol. Proteomics 2007, 7, 1654-1663.
    • (2007) Proteomics , vol.7 , pp. 1654-1663
    • Zhang, H.1    Lin, Q.2    Ponnusamy, S.3    Kothandaraman, N.4
  • 17
    • 0033051101 scopus 로고    scopus 로고
    • Direct analysis of protein complexes using mass spectrometry
    • Link, A. J., Eng, J., Schieltz, D. M., Carmack, E. et al., Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 1999, 17, 676-682.
    • (1999) Nat. Biotechnol. , vol.17 , pp. 676-682
    • Link, A.J.1    Eng, J.2    Schieltz, D.M.3    Carmack, E.4
  • 18
    • 35648974227 scopus 로고    scopus 로고
    • Elucidating the secretion proteome of human embryonic stem cell-derived mesenchymal stem cells
    • Sze, S. K., de Kleijn, D. P., Lai, R. C., Khia Way Tan, E. et al., Elucidating the secretion proteome of human embryonic stem cell-derived mesenchymal stem cells. Mol. Cell. Proteomics 2007, 6, 1680-1689.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1680-1689
    • Sze, S.K.1    De Kleijn, D.P.2    Lai, R.C.3    Khia Way Tan, E.4
  • 19
    • 33846165487 scopus 로고    scopus 로고
    • Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
    • Lu, P., Vogel, C., Wang, R., Yao, X., Marcotte, E. M., Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol. 2007, 25, 117-124.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 117-124
    • Lu, P.1    Vogel, C.2    Wang, R.3    Yao, X.4    Marcotte, E.M.5
  • 20
    • 0025334037 scopus 로고
    • Seasonally occurring lectins from the bryozoan Bugula neritina
    • Colon-Urban, R., Oppenheim, J. D., Seasonally occurring lectins from the bryozoan Bugula neritina. J. Exp. Zool. 1990, 254, 138-143.
    • (1990) J. Exp. Zool. , vol.254 , pp. 138-143
    • Colon-Urban, R.1    Oppenheim, J.D.2
  • 21
    • 17444402908 scopus 로고    scopus 로고
    • Adrenoceptor compounds prevent the settlement of marine invertebrate larvae: Balanus amphitrite (Cirripedia), Bugula neritina (Bryozoa) and Hydroides elegans (Polychaeta)
    • Dahms, H. U., Jin, T., Qian, P. Y., Adrenoceptor compounds prevent the settlement of marine invertebrate larvae: Balanus amphitrite (Cirripedia), Bugula neritina (Bryozoa) and Hydroides elegans (Polychaeta). Biofouling 2004, 20, 313-321.
    • (2004) Biofouling , vol.20 , pp. 313-321
    • Dahms, H.U.1    Jin, T.2    Qian, P.Y.3
  • 22
    • 0031731703 scopus 로고    scopus 로고
    • Functional partitioning of energy reserves by larvae of the marine bryozoan Bugula neritina (L.)
    • Hunter, E., Okano, K., Tomono, Y., Fusetani, N., Functional partitioning of energy reserves by larvae of the marine bryozoan Bugula neritina (L.). J. Exp. Biol. 1998, 201, 2857-2865.
    • (1998) J. Exp. Biol. , vol.201 , pp. 2857-2865
    • Hunter, E.1    Okano, K.2    Tomono, Y.3    Fusetani, N.4
  • 23
    • 67651222479 scopus 로고    scopus 로고
    • Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies
    • Bacchetti De Gregoris, T., Borra, M., Biffali, E., Bekel, T. et al., Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies. BMC Mol. Biol. 2009, 10, 62.
    • (2009) BMC Mol. Biol. , vol.10 , pp. 62
    • Bacchetti De Gregoris, T.1    Borra, M.2    Biffali, E.3    Bekel, T.4
  • 24
    • 33847029508 scopus 로고    scopus 로고
    • Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus Endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina
    • Sudek, S., Lopanik, N. B., Waggoner, L. E., Hildebrand, M. et al., Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus Endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina. J. Nat. Prod. 2007, 70, 67-74.
    • (2007) J. Nat. Prod. , vol.70 , pp. 67-74
    • Sudek, S.1    Lopanik, N.B.2    Waggoner, L.E.3    Hildebrand, M.4
  • 25
    • 84972136607 scopus 로고
    • Attachment and metamorphosis of the cheilo-ctenostome bryozoan Bugula neritina (linné)
    • Woollacott, R. M., Zimmer, R. L., Attachment and metamorphosis of the cheilo-ctenostome bryozoan Bugula neritina (linné). J. Morphol. 1971, 134, 351-382.
    • (1971) J. Morphol. , vol.134 , pp. 351-382
    • Woollacott, R.M.1    Zimmer, R.L.2
  • 26
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang, X., Madan, A., CAP3: a DNA sequence assembly program. Genome Res. 1999, 9, 868-877.
    • (1999) Genome Res. , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 27
    • 18644368893 scopus 로고    scopus 로고
    • GoPipe: Streamlined gene ontology annotation for batch anonymous sequences with statistics
    • Chen, Z.-Z., Xue, C.-H., Zhu, S., GoPipe: streamlined gene ontology annotation for batch anonymous sequences with statistics. Prog. Biochem. Biophys. 2005, 32, 187-190.
    • (2005) Prog. Biochem. Biophys. , vol.32 , pp. 187-190
    • Chen, Z.-Z.1    Xue, C.-H.2    Zhu, S.3
  • 29
    • 58149387660 scopus 로고    scopus 로고
    • A comparative study of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) versus SCX-IMAC-based methods for phosphopeptide isolation/enrichment
    • Gan, C. S., Guo, T., Zhang, H., Lim, S. K., Sze, S. K., A comparative study of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) versus SCX-IMAC-based methods for phosphopeptide isolation/enrichment. J. Proteome Res. 2008, 7, 4869-4877.
    • (2008) J. Proteome Res. , vol.7 , pp. 4869-4877
    • Gan, C.S.1    Guo, T.2    Zhang, H.3    Lim, S.K.4    Sze, S.K.5
  • 30
    • 68349107865 scopus 로고    scopus 로고
    • Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome
    • Kuntumalla, S., Braisted, J. C., Huang, S. T., Parmar, P. P. et al., Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome. Proteome Sci. 2009, 7, 22.
    • (2009) Proteome Sci. , vol.7 , pp. 22
    • Kuntumalla, S.1    Braisted, J.C.2    Huang, S.T.3    Parmar, P.P.4
  • 34
    • 0032078463 scopus 로고    scopus 로고
    • Molecular characteristics of insect vitellogenins and vitellogenin receptors
    • Sappington, T. W., Raikhel, A. S., Molecular characteristics of insect vitellogenins and vitellogenin receptors. Insect Biochem. Mol. Biol. 1998, 28, 277-300.
    • (1998) Insect Biochem. Mol. Biol. , vol.28 , pp. 277-300
    • Sappington, T.W.1    Raikhel, A.S.2
  • 35
    • 2342502619 scopus 로고    scopus 로고
    • Hormonal control of the yolk precursor vitellogenin regulates immune function and longevity in honeybees
    • Amdam, G. V., Simoes, Z. L., Hagen, A., Norberg, K. et al., Hormonal control of the yolk precursor vitellogenin regulates immune function and longevity in honeybees. Exp. Gerontol. 2004, 39, 767-773.
    • (2004) Exp. Gerontol. , vol.39 , pp. 767-773
    • Amdam, G.V.1    Simoes, Z.L.2    Hagen, A.3    Norberg, K.4
  • 36
  • 37
    • 73749083447 scopus 로고    scopus 로고
    • The expression and distribution of Wnt and Wnt receptor mRNAs during early sea urchin development
    • Stamateris, R. E., Rafiq, K., Ettensohn, C. A., The expression and distribution of Wnt and Wnt receptor mRNAs during early sea urchin development. Gene Expr. Patterns 2010, 10, 60-64.
    • (2010) Gene Expr. Patterns , vol.10 , pp. 60-64
    • Stamateris, R.E.1    Rafiq, K.2    Ettensohn, C.A.3
  • 38
    • 59249094141 scopus 로고    scopus 로고
    • Wnt signaling in the early sea urchin embryo
    • Kumburegama, S., Wikramanayake, A. H., Wnt signaling in the early sea urchin embryo. Methods Mol. Biol. 2008, 469, 187-199.
    • (2008) Methods Mol. Biol. , vol.469 , pp. 187-199
    • Kumburegama, S.1    Wikramanayake, A.H.2
  • 39
    • 0034786628 scopus 로고    scopus 로고
    • Ascidian Wnt-5 gene is involved in the morphogenetic movement of notochord cells
    • Sasakura, Y., Makabe, K. W., Ascidian Wnt-5 gene is involved in the morphogenetic movement of notochord cells. Dev. Growth Differ. 2001, 43, 573-582.
    • (2001) Dev. Growth Differ. , vol.43 , pp. 573-582
    • Sasakura, Y.1    Makabe, K.W.2
  • 40
    • 0031780256 scopus 로고    scopus 로고
    • HrWnt-5: A maternally expressed ascidian Wnt gene with posterior localization in early embryos
    • Sasakura, Y., Ogasawara, M., Makabe, K. W., HrWnt-5: a maternally expressed ascidian Wnt gene with posterior localization in early embryos. Int. J. Dev. Biol. 1998, 42, 573-579.
    • (1998) Int. J. Dev. Biol. , vol.42 , pp. 573-579
    • Sasakura, Y.1    Ogasawara, M.2    Makabe, K.W.3
  • 41
    • 41649112625 scopus 로고    scopus 로고
    • Novel genes involved in canonical Wnt/beta-catenin signaling pathway in early Ciona intestinalis embryos
    • Wada, S., Hamada, M., Kobayashi, K., Satoh, N., Novel genes involved in canonical Wnt/beta-catenin signaling pathway in early Ciona intestinalis embryos. Dev. Growth Differ. 2008, 50, 215-227.
    • (2008) Dev. Growth Differ. , vol.50 , pp. 215-227
    • Wada, S.1    Hamada, M.2    Kobayashi, K.3    Satoh, N.4
  • 42
    • 29144447754 scopus 로고    scopus 로고
    • Expression of 'segmentation' genes during larval and juvenile development in the polychaetes Capitella sp. I and H. elegans
    • Seaver, E. C., Kaneshige, L. M., Expression of 'segmentation' genes during larval and juvenile development in the polychaetes Capitella sp. I and H. elegans. Dev. Biol. 2006, 289, 179-194.
    • (2006) Dev. Biol. , vol.289 , pp. 179-194
    • Seaver, E.C.1    Kaneshige, L.M.2
  • 43
    • 2942530310 scopus 로고    scopus 로고
    • ERK and p38 MAPK-activated protein kinases: A family of protein kinases with diverse biological functions
    • Roux, P. P., Blenis, J., ERK and p38 MAPK-activated protein kinases: a family of protein kinases with diverse biological functions. Microbiol. Mol. Biol. Rev. 2004, 68, 320-344.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 320-344
    • Roux, P.P.1    Blenis, J.2
  • 44
    • 34247368546 scopus 로고    scopus 로고
    • ERK- and JNK-signalling regulate gene networks that stimulate metamorphosis and apoptosis in tail tissues of ascidian tadpoles
    • Chambon, J. P., Nakayama, A., Takamura, K., McDougall, A., Satoh, N., ERK- and JNK-signalling regulate gene networks that stimulate metamorphosis and apoptosis in tail tissues of ascidian tadpoles. Development 2007, 134, 1203-1219.
    • (2007) Development , vol.134 , pp. 1203-1219
    • Chambon, J.P.1    Nakayama, A.2    Takamura, K.3    McDougall, A.4    Satoh, N.5
  • 46
    • 0037306522 scopus 로고    scopus 로고
    • The Ras/MAPK cascade and the control of positive selection
    • Alberola-Ila, J., Hernandez-Hoyos, G., The Ras/MAPK cascade and the control of positive selection. Immunol. Rev. 2003, 191, 79-96.
    • (2003) Immunol. Rev. , vol.191 , pp. 79-96
    • Alberola-Ila, J.1    Hernandez-Hoyos, G.2
  • 47
    • 38149078120 scopus 로고    scopus 로고
    • Inhibitors of c-Jun N-terminal kinases: JuNK no more?
    • Bogoyevitch, M. A., Arthur, P. G., Inhibitors of c-Jun N-terminal kinases: JuNK no more? Biochim. Biophys. Acta 2008, 1784, 76-93.
    • (2008) Biochim. Biophys. Acta , vol.1784 , pp. 76-93
    • Bogoyevitch, M.A.1    Arthur, P.G.2
  • 48
    • 51449093967 scopus 로고    scopus 로고
    • c-Jun N-terminal kinase pathways in diabetes
    • Yang, R., Trevillyan, J. M., c-Jun N-terminal kinase pathways in diabetes. Int. J. Biochem. Cell Biol. 2008, 40, 2702-2706.
    • (2008) Int. J. Biochem. Cell Biol. , vol.40 , pp. 2702-2706
    • Yang, R.1    Trevillyan, J.M.2
  • 50
    • 0037216749 scopus 로고    scopus 로고
    • Mitogen activated protein (MAP) kinase signal transduction pathways and novel anti-inflammatory targets
    • Hommes, D. W., Peppelenbosch, M. P., van Deventer, S. J. H., Mitogen activated protein (MAP) kinase signal transduction pathways and novel anti-inflammatory targets. Gut 2003, 52, 144-151.
    • (2003) Gut , vol.52 , pp. 144-151
    • Hommes, D.W.1    Peppelenbosch, M.P.2    Van Deventer, S.J.H.3
  • 51
    • 0034660614 scopus 로고    scopus 로고
    • p38 protects human melanoma cells from UV-induced apoptosis through down-regulation of NF-kappaB activity and Fas expression
    • Ivanov, V. N., Ronai, Z., p38 protects human melanoma cells from UV-induced apoptosis through down-regulation of NF-kappaB activity and Fas expression. Oncogene 2000, 19, 3003-3012.
    • (2000) Oncogene , vol.19 , pp. 3003-3012
    • Ivanov, V.N.1    Ronai, Z.2
  • 52
    • 0032833023 scopus 로고    scopus 로고
    • Genetic evidence that stress-activated p38 MAP kinase is necessary but not sufficient for UV activation of HIV gene expression
    • Taher, M. M., Baumgardner, T., Dent, P., Valerie, K., Genetic evidence that stress-activated p38 MAP kinase is necessary but not sufficient for UV activation of HIV gene expression. Biochemistry 1999, 38, 13055-13062.
    • (1999) Biochemistry , vol.38 , pp. 13055-13062
    • Taher, M.M.1    Baumgardner, T.2    Dent, P.3    Valerie, K.4


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