2D gel-based multiplexed proteomic analysis during larval development and metamorphosis of the biofouling polychaete tubeworm hydroides elegans

Journal of Proteome Research

Volumn 9, Issue 9, 2010, Pages 4851-4860

  Zhang, Yu ^a   Sun, Jin ^b   Xiao, Kang ^a   Arellano, Shawn M ^a   Thiyagarajan, Vengatesen ^c   Qian, Pei Yuan ^a  

^a HONG KONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Hong Kong)

^b HONG KONG BAPTIST UNIVERSITY   (Hong Kong)

^c UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

2 DE, multiplexed proteomics; Hydroides elegans; larval development; larval metamorphosis; phosphoproteome; proteome

Indexed keywords

PHOSPHOPROTEIN; PROTEOME;

ANALYTIC METHOD; ARTICLE; BIOFOULING; HYDROIDES ELEGANS; LARVAL DEVELOPMENT; LARVAL STAGE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; METAMORPHOSIS; NONHUMAN; POLYCHAETA; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PHOSPHORYLATION; PROTEIN PROCESSING; PROTEOMICS; TWO DIMENSIONAL BASED MULTIPLEXED PROTEOMIC ANALYSIS;

ANIMALS; BLOTTING, WESTERN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; LARVA; METAMORPHOSIS, BIOLOGICAL; PEPTIDE FRAGMENTS; PHOSPHOPROTEINS; PHOSPHORYLATION; POLYCHAETA; PROTEOME; PROTEOMICS; TRYPSIN;

HYDROIDES ELEGANS; POLYCHAETA; TUBICOLAE;

EID: 77956314945     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr100645z     Document Type: Article

References (54)

1. Ten Hove, H. A. Notes on Hydroides elegans (Haswell 1883) and Mercierella enigmatica Fauvel 1923, alien serpulid polychaetes introduced into the Netherlands Bull. Zool. Mus. Univ. Amsterdam. 1974, 4 (6) 45-51
2. Bastida-Zavala, J. R.; Ten Hove, H. A. Revisions of Hydroides Gunnerus, 1768 (Polychaeta: Serpulidae) from the Western Atlantic region Beaufortia. 2002, 52 (9) 103-178
3. Bastida-Zavala, J. R.; Ten Hove, H. A. Revisions of Hydroides Gunnerus, 1768 (Polychaeta: Serpulidae) from the Eastern Pacific region and Hawaii Beaufortia. 2003, 53 (4) 67-110
4. Qian, P. Y. Larval settlement of polychaetes Hydrobiologia. 1999, 402, 239-253
5. Kristensen, J. B.; Meyer, R. L.; Laursen, B. S.; Shipovskov, S.; Besenbacher, F.; Poulsen, C. H. Antifouling enzymes and the biochemistry of marine settlement Biotechnol. Adv. 2008, 26 (5) 471-481
6. Holmstroöm, C.; Egan, S.; Franks, A.; McCloy, S.; Kjelleberg, S. Antifouling activities expressed by marine surface associated Pseudoalteromonas species FEMS Microb. Ecol. 2002, 41 (1) 47-58
7. Xu, Y.; Li, H. L.; Li, X. C.; Xiao, X.; Qian, P. Y. Inhibitory Effects of a branched-chain fatty acid on larval settlement of the polychaete Hydroides elegans Mar. Biotechnol. 2009, 11 (4) 495-504
8. Qian, P. Y.; Lau, S. C. K.; Dahms, H. U.; Dobretsov, S.; Harder, T. Marine biofilms as mediators of colonization by marine macroorganisms: Implications for antifouling and aquaculture Mar. Biotechnol. 2007, 9 (4) 399-410
9. Yang, L. H.; Lau, S. C. K.; Lee, O. O.; Tsoi, M. M. Y.; Qian, P. Y. Potential roles of succinic acid against colonization by a tubeworm J. Exp. Mar. Biol. Ecol. 2007, 349 (1) 1-11
10. McMaster, D. M.; Bennett, S. M.; Tang, Y.; Finlay, J. A.; Kowalke, G. L.; Nedved, B.; Bright, F. V.; Callow, M. E.; Callow, J. A.; Wendt, D. E.; Hadfield, M. G.; Detty, M. R. Antifouling character of "active" hybrid xerogel coatings with sequestered catalysts for the activation of hydrogen peroxide Biofouling. 2009, 25 (1) 21-33
11. Pechenik, J. A.; Qian, P. Y. Onset and maintenance of metamorphic competence in the marine polychaete Hydroides elegans Haswell in response to three chemical cues J. Exp. Mar. Biol. Ecol. 1998, 226 (1) 51-74
12. Bryan, P. J.; Kreider, J. L.; Qian, P. Y. Settlement of the serpulid polychaete Hydroides elegans (Haswell) on the arborescent bryozoan Bugula neritina (L.): evidence of a chemically mediated relationship J. Exp. Mar. Biol. Ecol. 1998, 220 (2) 171-190
13. Lam, C.; Harder, T.; Qian, P. Y. Induction of larval settlement in the polychaete Hydroides elegans by extracellular polymers of benthic diatoms Mar. Ecol.: Prog. Ser. 2005, 286, 145-154
14. Huang, Y. L.; Dobretsov, S.; Xiong, H. R.; Qian, P. Y. Effect of biofilm formation by Pseudoalteromonas spongiae on induction of larval settlement of the polychaete Hydroides elegans Appl. Environ. Microbiol. 2007, 73 (19) 6284-6288
15. Nedved, B. T.; Hadfield, M. G. Hydroides elegans (Annelida: Polychaeta): A model for biofouling research. In Marine and Industrial Biofouing, Flemming, H. G.; Murthy, P. S.; Venkatesan., R.; Cooksey., K. E., Eds.; Springer Series on Biofilms 4; Springer: Berlin, 2008; pp 203 - 217.
16. Seaver, E. C.; Kaneshige, L. M. Expression of "segmentation" genes during larval and juvenile development in the polychaetes Capitella sp. I and H. elegans. Dev. Biol. 2006, 289 (1) 179-194
17. Arenas-Mena, C.; Wong, K. S.; Arandi-Forosani, N. Ciliary band gene expression patterns in the embryo and trochophore larva of an indirectly developing polychaete Gene Expression Patterns 2007, 7 (5) 544-549
18. Li, H. L.; Song, L. S.; Qian, P. Y. Cyclic AMP concentration and protein kinase A (PKA) gene expression at different developmental stages of the polychaete Hydroides elegans J. Exp. Zool., Part B. 2009, 310B (5) 417-427
19. Graham, D. R.; Elliott, S. T.; Van Eyk, J. E. Broad-based proteomics strategies: a practical guide to proteomics and functional screening J. Physiol. 2005, 563 (1) 1-9
20. Tyers, M.; Mann, M. From genomics to proteomics Nature 2003, 422 (6928) 193-197
21. Goörg, A.; Weiss, W.; Dunn, M. J. Current two-dimensional electrophoresis technology for proteomics Proteomics 2004, 4 (12) 3665-3685
22. Garfin, D. E. Two-dimensional gel electrophoresis: an overview Trends Anal. Chem. 2003, 22 (5) 263-272
23. López, J. L. Two-dimensional electrophoresis in proteome expression analysis J. Chromatogr. B 2007, 849 (1-2) 190-202
24. Thiyagarajan, V.; Qian, P. Y. Proteomic analysis of larvae during development, settlement, and metamorphosis in the fouling barnacle Balanus amphitrite Proteomics 2008, 8 (15) 3164-3172
25. Thiyagarajan, V.; Wong, T.; Qian, P. Y. 2D gel-based proteome and phosphoproteome analysis during larval metamorphosis in two major marine biofouling invertebrates J. Proteome Res. 2009, 8 (6) 2708-2719
26. Nomura, M.; Nakajima, A.; Inaba, K. Proteomic profile of embryonic development in the ascidian Ciona intestinalis Dev. Biol. 2009, 325 (2) 468-481
27. Mok, F. S. Y.; Thiyagarajan, V.; Qian, P. Y. Proteomic analysis during larval development and the metamorphosis of the spionid polychaete Pseudopolydora vexillosa Proteome Sci. 2009, 7, 44, DOI: 10.1186/1477-5956-7-44.
28. Zhang, Y.; Xu, Y.; Arellano, S. M.; Xiao, K.; Qian, P. Y. Comparative proteome and phosphoproteome analyses during cyprid development of the barnacle Balanus (= Amphibalanus) amphitrite J. Proteome Res. 2010, 9 (6) 3146-3157
29. Wong, Y. H.; Arellano, S. M.; Zhang, H. M.; Ravasi, T.; Qian, P. Y. Dependency on de novo protein synthesis and proteomic changes during metamorphosis of the marine bryozoan Bugula neritina Proteome Sci. 2010, 8 (1) 25 DOI: 10.1186/1477-5956-8-25
30. Carpizo-Ituarte, E.; Hadfield, M. G. Transcription and translation inhibitors permit metamorphosis up to radiole formation in the serpulid polychaete Hydroides elegans Haswell Biol. Bull. 2003, 204 (2) 114-125
31. Bryan, P. J.; Qian, P. Y.; Kreider, J. L.; Chia, F. S. Induction of larval settlement and metamorphosis by pharmacological and conspecific associated compounds in the serpulid polychaete Hydroides elegans Mar. Ecol.: Prog. Ser. 1997, 146, 81-90
32. Qiu, J. W.; Qian, P. Y. Combined effects of salinity, temperature and food on early development of the polychaete Hydroides elegans Mar. Ecol.: Prog. Ser. 1997, 152, 79-88
33. Ramagli, L. S.; Rodriguez, L. V. Quantitation of microgram amounts of protein in two-dimensional polyacrylamide gel electrophoresis sample buffer Electrophoresis 1985, 6 (11) 559-563
34. Wittig, I.; Braun, H. P.; Schaögger, H. Blue native PAGE Nat. Protoc. 2006, 1 (1) 418-428
35. Shevchenko, A.; Wilm, M.; Vorm, O.; Mann, M. Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels Anal. Chem. 1996, 68 (5) 850-858
36. Sun, J.; Zhang, Y.; Thiyagarajan, V.; Qian, P. Y.; Qiu, J. W. Protein expression during the embryonic development of a gastropod. Proteomics 2010, 10 (14) 2701-2711
37. Katz, A.; Waridel, P.; Shevchenko, A.; Pick, U. Salt-induced changes in the plasma membrane proteome of the halotolerant alga Dunaliella salina as revealed by blue native gel electrophoresis and nano-LC-MS/MS analysis Mol. Cell. Proteomics 2007, 6 (9) 1459-1472
38. Waridel, P.; Frank, A.; Thomas, H.; Surendranath, V.; Sunyaev, S.; Pevzner, P.; Shevchenko, A. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing Proteomics 2007, 7 (14) 2318-2329
39. Lucitt, M. B.; Price, T. S.; Pizarro, A.; Wu, W.; Yocum, A. K.; Seiler, C.; Pack, M. A.; Blair, I. A.; FitzGerald, G. A.; Grosser, T. Analysis of the Zebrafish Proteome during Embryonic Development Mol. Cell. Proteomics 2008, 7 (5) 981-994
40. Verdier-Pinard, P.; Pasquier, E.; Xiao, H.; Burd, B.; Villard, C.; Lafitte, D.; Miller, L. M.; Angeletti, R. H.; Horwitz, S. B.; Braguer, D. Tubulin proteomics: Towards breaking the code Anal. Biochem. 2009, 384 (2) 197-206
41. McDougall, C.; Chen, W. C.; Shimeld, S. M.; Ferrier, D. EK. The development of the larval nervous system, musculature and ciliary bands of Pomatoceros lamarckii (Annelida): heterochrony in polychaetes. Front. Zool 2006, 3 16 10.1186/1742-9994-3-16
42. Erck, C.; Peris, L.; Andrieux, A.; Meissirel, C.; Gruber, A. D.; Vernet, M.; Schweitzer, A.; Saoudi, Y.; Pointu, H.; Bosc, C.; Salin, P. A.; Job, D.; Wehland, J. A vital role of tubulin-tyrosine-ligase for neuronal organization Proc. Natl. Acad. Sci. 2005, 102 (22) 7853-7858
43. Ikegami, K.; Heier, R. L.; Taruishi, M.; Takagi, H.; Mukai, M.; Shimma, S.; Taira, S.; Hatanaka, K.; Morone, N.; Yao, I.; Campbell, P. K.; Yuasa, S.; Janke, C.; Macgregor, G. R.; Setou, M. Loss of α-tubulin polyglutamylation in ROSA22 mice is associated with abnormal targeting of KIF1A and modulated synaptic function Proc. Natl. Acad. Sci. 2007, 104 (9) 3213-3218
44. Hammond, J. W.; Cai, D.; Verhey, K. J. Tubulin modifications and their cellular functions Curr. Opin. Cell Biol. 2008, 20 (1) 71-76
45. Westermann, S.; Weber, K. Post-translational modifications regulate microtubule function Nat. Rev. Mol. Cell Biol. 2003, 4 (12) 938-948
46. Bonnet, C.; Boucher, D.; Lazereg, S.; Pedrotti, B.; Islam, K.; Denoulet, P.; Larcher, J. C. Differential binding regulation of microtubule-associated proteins MAP1A, MAP1B, and MAP2 by tubulin polyglutamylation J. Biol. Chem. 2001, 276 (16) 12839-12848
47. Lo, N.; Watanabe, H.; Sugimura, M. Evidence for the presence of a cellulase gene in the last common ancestor of bilaterian animals Proc. Biol. Sci. 2003, 270, S69-S72
48. Nishida, H.; Suzuki, K.; Kumagai, Y.; Tanaka, H.; Inoue, A.; Ojima, T. Isolation and primary structure of a cellulase from the Japanese sea urchin Strongylocentrotus nudus Biochimie 2007, 89 (8) 1002-1011
49. Nikapitiya, C.; Oh, C.; De Zoysa, M.; Whang, I.; Kang, D. H.; Lee, S. R.; Kim, S. J.; Lee, J. Characterization of beta-1,4-endoglucanase as a polysaccharide-degrading digestive enzyme from disk abalone Haliotis discus discus. Aquacult. Int. Published Online: Jan 30, 2010. DOI: 10.1007/s10499-010- 9324-9.
50. Du, X. J.; Zhao, X. F.; Wang, J. X. Molecular cloning and characterization of a lipopolysaccharide and β-1,3-glucan binding protein from fleshy prawn (Fenneropenaeus chinensis) Mol. Immunol. 2007, 44 (6) 1085-1094
51. Roux, M. M.; Pain, A.; Klimpel, K. R.; Dhar, A. K. The lipopolysaccharide and β-1,3-glucan binding protein gene is upregulated in white spot virus-infected shrimp (Penaeus stylirostris) J. Virol. 2002, 76 (14) 7140-7149
52. Cerenius, L.; Soderhall, K. The prophenoloxidase-activating system in invertebrates Immunol. Rev. 2004, 198 (1) 116-126
53. Cerenius, L.; Lee, B. L.; Soderhall, K. The proPO-system: Pros and cons for its role in invertebrate immunity Trends Immunol. 2008, 29 (6) 263-271
54. Davidson, B.; Swalla, B. J. A molecular analysis of ascidian metamorphosis reveals activation of an innate immune response Development 2002, 129 (20) 4739-4751