Carotid atherosclerotic plaques: Proteomics study after a low-abundance protein enrichment step

Electrophoresis

Volumn 33, Issue 3, 2012, Pages 470-482

  Malaud, Eric ^a   Piquer, Dominique ^a   Merle, Delphine ^a   Molina, Laurence ^a   Guerrier, Luc ^b   Boschetti, Egisto ^b   Saussine, Max ^c   Marty Ané, Charles ^c   Albat, Bernard ^c   Fareh, Jeannette ^a  

^a SysDiag   (France)

^b Bio Rad   (France)

^c HÔPITAL ARNAUD DE VILLENEUVE   (France)

Author keywords

2 DE; Atherosclerosis; Bead library technology; Heat shock protein 27; Proteomics

Indexed keywords

CHAINS; DISEASES; ELECTROPHORESIS; MOLECULAR BIOLOGY;

2-DE; ATHEROSCLEROSE; ATHEROSCLEROTIC PLAQUE; BEAD-LIBRARY TECHNOLOGY; HEAT SHOCK PROTEIN; HEAT SHOCK PROTEIN 27; ISOFORMS; LOW-ABUNDANCE PROTEINS; PROTEOMIC STUDIES; PROTEOMICS;

PROTEINS;

ALDEHYDE DEHYDROGENASE; BIOLOGICAL MARKER; HEAT SHOCK PROTEIN 27; HEMOGLOBIN BETA CHAIN; INTER ALPHA TRYPSIN INHIBITOR FAMILY HEAVY CHAIN RELATED PROTEIN 4; LIGAND; MOESIN; PROTEIN KINASE C DELTA BINDING PROTEIN; UNCLASSIFIED DRUG;

ADULT; AGED; ARTICLE; BLEEDING; CAROTID ATHEROSCLEROSIS; CONTROLLED STUDY; ENDARTERECTOMY; ENRICHMENT CULTURE; FEMALE; FIBROSIS; HUMAN; HUMAN TISSUE; INTERMETHOD COMPARISON; MALE; MOLECULAR DYNAMICS; MOLECULAR LIBRARY; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; TWO DIMENSIONAL ELECTROPHORESIS;

EID: 84856397124     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201100395     Document Type: Article

References (42)

1. Finn, A. V., Nakano, M., Narula, J., Kolodgie, F. D., Virmani, R., Arterioscler. Thromb. Vasc. Biol. 2010, 30, 1282-1292.
2. Hellings, W. E., Peeters, W., Moll, F. L., Piers, S. R., van Setten, J., Van der Spek, P. J., de Vries, J. P., Seldenrijk, K. A., De Bruin, P. C., Vink, A., Velema, E., de Kleijn, D. P., Pasterkamp, G., Circulation 2010, 121, 1941-1950.
3. Virmani, R., Kolodgie, F. D., Burke, A. P., Finn, A. V., Gold, H. K., Tulenko, T. N., Wrenn, S. P., Narula, J., Arterioscler. Thromb. Vasc. Biol. 2005, 25, 2054-2061.
4. Ionita, M. G., Vink, A., Dijke, I. E., Laman, J. D., Peeters, W., van der Kraak, P. H., Moll, F. L., de Vries, J. P., Pasterkamp, G., de Kleijn, D. P., Arterioscler. Thromb. Vasc. Biol. 2009, 29, 1220-1227.
5. Tedgui, A., Mallat, Z., Physiol. Rev. 2006, 86, 515-581.
6. Sangiorgi, G., Mauriello, A., Bonanno, E., Oxvig, C., Conover, C. A., Christiansen, M., Trimarchi, S., Rampoldi, V., Holmes, D. R. Jr., Schwartz, R. S., Spagnoli, L. G., J. Am. Coll. Cardiol. 2006, 47, 2201-2211.
7. Leclercq, A., Houard, X., Loyau, S., Philippe, M., Sebbag, U., Meilhac, O., Michel, J. B., Atherosclerosis 2007, 191, 1-10.
8. Sluijter, J. P., Pulskens, W. P., Schoneveld, A. H., Velema, E., Strijder, C. F., Moll, F., de Vries, J. P., Verheijen, J., Hanemaaijer, R., de Kleijn, D. P., Pasterkamp, G., Stroke 2006, 37, 235-239.
9. Leclercq, A., Houard, X., Philippe, M., Ollivier, V., Sebbag, U., Meilhac, O., Michel, J. B., J. Leukoc. Biol. 2007, 82, 1420-1429.
10. Reininger, A. J., Bernlochner, I., Penz, S. M., Ravanat, C., Smethurst, P., Farndale, R. W., Gachet, C., Brandl, R., Siess, W., J. Am. Coll. Cardiol. 2010, 55, 1147-1158.
11. de Kleijn, D. P., Moll, F. L., Hellings, W. E., Ozsarlak-Sozer, G., de Bruin, P., Doevendans, P. A., Vink, A., Catanzariti, L. M., Schoneveld, A. H., Algra, A., Daemen, M. J., Biessen, E. A., de Jager, W., Zhang, H., de Vries, J. P., Falk, E., Lim, S. K., van der Spek, P. J., Sze, S. K., Pasterkamp, G., Arterioscler. Thromb. Vasc. Biol. 2010, 30, 612-619.
12. Park, H. K., Park, E. C., Bae, S. W., Park, M. Y., Kim, S. W., Yoo, H. S., Tudev, M., Ko, Y. H., Choi, Y. H., Kim, S., Kim, D. I., Kim, Y. W., Lee, B. B., Yoon, J. B., Park, J. E., Circulation 2006, 114, 886-893.
13. Lepedda, A. J., Cigliano, A., Cherchi, G. M., Spirito, R., Maggioni, M., Carta, F., Turrini, F., Edelstein, C., Scanu, A. M., Formato, M., Atherosclerosis 2009, 203, 112-118.
14. Donners, M. M., Verluyten, M. J., Bouwman, F. G., Mariman, E. C., Devreese, B., Vanrobaeys, F., van Beeumen, J., van den Akker, L. H., Daemen, M. J., Heeneman, S. J., Pathology 2005, 206, 39-45.
15. Duran, M. C., Mas, S., Martin-Ventura, J. L., Meilhac, O., Michel, J. B., Gallego-Delgado, J., Lázaro, A., Tuñon, J., Egido, J., Vivanco, F., Proteomics 2003, 3, 973-978.
16. Zolotarjova, N., Martosella, J., Nicol, G., Bailey, J., Boyes, B. E., Barrett, W. C., Proteomics 2005, 5, 3304-3313.
17. Sennels, L., Salek, M., Lomas, L., Boschetti, E., Righetti, P. G., Rappsilber, J., J. Proteome Res. 2007, 6, 4055-4062.
18. Sihlbom, C., Kanmert, I., Bahr, H., Davidsson, P., J. Proteome Res. 2008, 7, 4191-4198.
19. Castagna, A., Cecconi, D., Sennels, L., Rappsilber, J., Guerrier, L., Fortis, F., Boschetti, E., Lomas, L., Righetti, P. G., J. Proteome Res. 2005, 4, 1917-1930.
20. Mouton-Barbosa, E., Roux-Dalvai, F., Bouyssié, D., Berger, F., Schmidt, E., Righetti, P. G., Guerrier, L., Boschetti, E., Burlet-Schiltz, O., Monsarrat, B., de Peredo, A. G., Mol. Cell. Proteomics 2010, 9, 1006-1021.
21. Guerrier, L., Claverol, S., Fortis, F., Rinalducci, S., Timperio, A. M., Antonioli, P., Jandrot-Perrus, M., Boschetti, E., Righetti, P. G., J. Proteome Res. 2007, 6, 4290-4303.
22. Roux-Dalvai, F., Gonzalez de Peredo, A., Simó, C., Guerrier, L., Bouyssié, D., Zanella, A., Citterio, A., Burlet-Schiltz, O., Boschetti, E., Righetti, P. G., Monsarrat, B., Mol. Cell. Proteomics 2008, 7, 2254-2269.
23. Léger, T., Lavigne, D., Le Caër, J. P., Guerrier, L., Boschetti, E., Fareh, J., Feldman, L., Laprévote, O., Meilhac, O., Clin. Chim. Acta 2011, 412, 740-747.
24. Au, J. S., Cho, W. C., Yip, T. T., Yip, C., Zhu, H., Leung, W. W., Tsui, P. Y., Kwok, D. L., Kwan, S. S., Cheng, W. W., Tzang, L. C., Yang, M., Law, S. C., Biomed. Pharmacother. 2007, 61, 570-577.
25. Petri, A. L., Simonsen, A. H., Yip, T. T., Hogdall, E., Fung, E. T., Lundvall, L., Hogdall, C., Acta Obstet. Gynecol. Scand. 2009, 88, 18-26.
26. Kane, L. A., Neverova, I., Van Eyk, J. E., Methods Mol. Biol. 2007, 357, 87-90.
27. Bradford, M. M., Anal. Biochem. 1976, 72, 248-254.
28. Montaño, R. F., Morrison, S. L., J. Immunol. Methods 1999, 222, 73-82.
29. Narita, M., Kitagawa, K., Nagai, Y., Hougaku, H., Hashimoto, H., Sakaguchi, M., Yang, X., Takeshita, T., Morimoto, K., Matsumoto, M., Hori, M., Ultrasound Med. Biol. 2003, 29, 1415-1419.
30. Rekhter, M., Chandrasekhar, K., Gifford-Moore, D., Huang, X. D., Rutherford, P., Hanson, J., Kauffman, R., Exp. Clin. Cardiol. 2007, 12, 169-174.
31. Talusan, P., Bedri, S., Yang, S., Kattapuram, T., Silva, N., Roughley, P. J., Stone, J. R., Mol. Cell. Proteomics 2005, 4, 1350-1357.
32. Kashyap, R. S., Nayak, A. R., Deshpande, P. S., Kabra, D., Purohit, H. J., Taori, G. M., Daginawala, H. F., Clin. Chim. Acta 2009, 402, 160-163.
33. Nofer, J. R., Brodde, M. F., Kehrel, B. E., Clin. Exp. Pharmacol. Physiol. 2010, 37, 726-735.
34. Bobbert, T., Raila, J., Schwarz, F., Mai, K., Henze, A., Pfeiffer, A. F., Schweigert, F. J., Spranger, J., Atherosclerosis 2010, 213, 549-551.
35. Boschetti, E., Righetti, P. G., Proteomics 2009, 9, 1492-1510.
36. Righetti, P. G., Boschetti, E., Kravchuk, A. V., Fasoli, E., Expert Rev. Proteomics 2010, 7, 373-385.
37. Martin-Ventura, J. L., Duran, M. C., Blanco-Colio, L. M., Meilhac, O., Leclercq, A., Michel, J. B., Jensen, O. N., Hernandez-Merida, S., Tuñón, J., Vivanco, F., Egido, J., Circulation 2004, 110, 2216-2219.
38. Martin-Ventura, J. L., Nicolas, V., Houard, X., Blanco-Colio, L. M., Leclercq, A., Egido, J., Vranckx, R., Michel, J. B., Meilhac, O., Arterioscler. Thromb. Vasc. Biol. 2006, 26, 1337-1343.
39. Trott, D., McManus, C. A., Martin, J. L., Brennan, B., Dunn, M. J., Rose, M. L., Proteomics 2009, 9, 3383-3394.
40. Robinson, A. A., Dunn, M. J., McCormack, A., dos Remedios, C., Rose, M. L., J. Mol. Cell. Cardiol. 2010, 49, 370-379.
41. Durán, M. C., Boeri-Erba, E., Mohammed, S., Martín-Ventura, J. L., Egido, J., Vivanco, F., Jensen, O. N., Methods Mol. Biol. 2007, 357, 151-163.
42. García-Arguinzonis, M., Padró, T., Lugano, R., Llorente-Cortes, V., Badimon, L., Arterioscler. Thromb. Vasc. Biol. 2010, 30, 1212-1219.