Evaluation of the combination of bead technology with SELDI-TOF-MS and 2-D DIGE for detection of plasma proteins

Journal of Proteome Research

Volumn 7, Issue 9, 2008, Pages 4191-4198

  Sihlbom, Carina ^a   Kanmert, Ida ^a   Von Bahr, Helena ^a   Davidsson, Pia ^a  

^a ASTRAZENECA R AND D   (Sweden)

Author keywords

2 D DIGE; Bead based technology; Mass spectrometry; Plasma proteins; SELDI TOF MS

Indexed keywords

PLASMA PROTEIN; PROTEOME;

ARTICLE; CONTROLLED STUDY; HUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; TWO DIMENSIONAL ELECTROPHORESIS; EVALUATION; METHODOLOGY; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

BLOOD PROTEINS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; PROTEOME; TANDEM MASS SPECTROMETRY;

EID: 55249123169     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr800340c     Document Type: Article

References (14)

1. Gianazza, E.; Arnaud, P. Chromatography of plasma proteins on immobilized Cibacron Blue F3-GA. Mechanism of the molecular interaction. J. Biochem. 1982, 203, 637-641.
2. Björhall, K.; Miliotis, T.; Davidsson, P. Comparison of different depletion strategies for improved resolution in proteomic analysis of human serum samples. Proteomics 2005, 5 (1), 307-317.
3. Wang, Y. Y.; Cheng, P.; Chan, D. W. A simple affinity spin tube filter method for removing high-abundant common proteins or enriching low-abundant biomarkers for serum proteomic analysis. Proteomics 2003, 3, 243-248.
4. Steel, L. F.; Shumpert, D.; Trotter, M; Seeholzer, S. H.; Evans, A. A.; London, W. T.; Dwek, R.; Block, T. M. Efficient and specific removal of albumin from human serum samples. Mol. Cell. Proteomics 2003, 2 (4), 262-270.
5. Righetti, P. G.; Boschetti, E.; Lomas, L.; Citterio, A. Protein Equalizer Technology: the quest for a "democratic proteome. Proteomics 2006, 6, 3980-3992.
6. Thulasiraman, V.; Lin, S.; Gheorghiu, L.; Lathrop, J.; Lomas, L.; Hammond, D.; Boschetti, E. Reduction of the concentration difference of proteins in biological liquids using a library of combinatorial ligands. Electrophoresis 2005, 26, 3561-3571.
7. Righetti, P. G.; Castagna, A.; Antonioli, P.; Boschetti, E. Prefractionation techniques in proteome analysis: the mining tools of the third millennium. Electrophoresis 2005, 26, 297-319.
8. Righetti, P. G.; Castagna, A.; Antonucci, F.; Piubelli, C.; Cecconi, D.; Campostrini, N.; Rustichelli, C.; Antonioli, P.; Zanusso, G.; Monaco, S.; Lomas, L.; Boschetti, E. Proteome analysis in the clinical chemistry laboratory: myth or reality. Clin. Chem. Acta 2005, 26, 297-319.
9. Guerrier, L.; Claverol, S.; Finzi, L.; Paye, F.; Fortis, F.; Boschetti, E.; Housset, C. Contribution of solid-phase hexapeptide ligand libraries to the repertoire of human bile proteins. J Chromatogr. A 2007, 28, 1176.
10. Castagna, A.; Cecconi, D.; Sennels, L.; Rappsilber, J.; Guerrier, L.; Fortis, F.; Boschetti, E.; Lomas, L.; Righetti, P. G. Exploring the hidden human urinary proteome via ligand library beads. J. Proteome Res. 2005, 4 (6), 1917-1930.
11. Sennels, L.; Salek, M.; Lomas, L.; Boschetti, E.; Righetti, P. G.; Rappsilber, J. Proteomic analysis of human blood serum using peptide library beads. J. Proteome Res. 2007, 6 (10)), 4055-4062.
12. Au, J. S.; Cho, W. C.; Yip, T. T.; Yip, C.; Zhu, H.; Leung, W. W.; Tsui, P. Y.; Kwok, D. L.; Kwan, S. S.; Cheng, W. W.; Tzang, L. C.; Yang, M.; Law, S. C. Deep proteome profiling of sera from never-smoked lung cancer patients. Biomed. Pharmacother. 2007, 61 (9), 570-577.
13. Rappsilber, J.; Ishihama, Y.; Mann, M. Stop and Go extraction tips for laserdesorption/ ionization nanoelectrospray, and LC/MS sample pretreatment. Anal. Chem. 2003, 75, 663-670.
14. Kilani, R. T.; Maksymowych, W. P.; Aitken, A.; Boire, G.; St-Pierre, Y.; Li, Y.; Ghahary, A. Detection of high levels of 2 specific isoforms of 14-3-3 proteins in synovial fluid from patients with joint inflammation. J. Rheumatol. 2007, 34 (8), 1650-1657.