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Volumn 29, Issue 3, 2012, Pages 271-278

A novel DNAseq program for enhanced analysis of Illumina GAII data: A case study on antibody complementarity-determining regions

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARITY-DETERMINING REGIONS; COMPREHENSIVE ANALYSIS; DNA LIBRARY; DNA SEQUENCING; GENOME LIBRARIES; HIGH-THROUGHPUT; ILLUMINA; IN-SILICO; MICROSOFT; PHYLOGENETIC ANALYSIS; POWERFUL SYSTEMS; SHORT SEQUENCES; SINGLE-CHAIN ANTIBODIES;

EID: 84856367729     PISSN: 18716784     EISSN: 18764347     Source Type: Journal    
DOI: 10.1016/j.nbt.2011.11.014     Document Type: Article
Times cited : (2)

References (21)
  • 1
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • Mortazavi A., et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 2008, 5:621-628.
    • (2008) Nat. Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1
  • 2
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi U., et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 2008, 320:1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1
  • 3
    • 65649122270 scopus 로고    scopus 로고
    • High-throughput sequencing of the zebrafish antibody repertoire
    • Weinstein J.A., et al. High-throughput sequencing of the zebrafish antibody repertoire. Science 2009, 324:807-810.
    • (2009) Science , vol.324 , pp. 807-810
    • Weinstein, J.A.1
  • 4
    • 39049156065 scopus 로고    scopus 로고
    • Short read fragment assembly of bacterial genomes
    • Chaisson M.J., Pevzner P.A. Short read fragment assembly of bacterial genomes. Genome Res. 2008, 18:324-330.
    • (2008) Genome Res. , vol.18 , pp. 324-330
    • Chaisson, M.J.1    Pevzner, P.A.2
  • 5
    • 43149085041 scopus 로고    scopus 로고
    • De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer
    • Hernandez D., et al. De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res. 2008, 18:802-809.
    • (2008) Genome Res. , vol.18 , pp. 802-809
    • Hernandez, D.1
  • 6
    • 59949090259 scopus 로고    scopus 로고
    • De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae
    • Reinhardt J.A., et al. De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. Genome Res. 2009, 19:294-305.
    • (2009) Genome Res. , vol.19 , pp. 294-305
    • Reinhardt, J.A.1
  • 7
    • 33847307402 scopus 로고    scopus 로고
    • Assembling millions of short DNA sequences using SSAKE
    • Warren R.L., et al. Assembling millions of short DNA sequences using SSAKE. Bioinformatics 2007, 23:500-501.
    • (2007) Bioinformatics , vol.23 , pp. 500-501
    • Warren, R.L.1
  • 8
    • 28544440749 scopus 로고    scopus 로고
    • An analysis of the feasibility of short read sequencing
    • Whiteford N., et al. An analysis of the feasibility of short read sequencing. Nucleic Acids Res. 2005, 33:e171.
    • (2005) Nucleic Acids Res. , vol.33
    • Whiteford, N.1
  • 9
    • 43149086380 scopus 로고    scopus 로고
    • ALLPATHS: de novo assembly of whole-genome shotgun microreads
    • Butler J., et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res. 2008, 18:810-820.
    • (2008) Genome Res. , vol.18 , pp. 810-820
    • Butler, J.1
  • 10
    • 66449136667 scopus 로고    scopus 로고
    • ABySS: a parallel assembler for short read sequence data
    • Simpson J.T., et al. ABySS: a parallel assembler for short read sequence data. Genome Res. 2009, 19:1117-1123.
    • (2009) Genome Res. , vol.19 , pp. 1117-1123
    • Simpson, J.T.1
  • 11
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino D.R., Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008, 18:821-829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 12
    • 70349648171 scopus 로고    scopus 로고
    • Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing
    • Freeman J.D., et al. Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing. Genome Res. 2009, 19:1817-1824.
    • (2009) Genome Res. , vol.19 , pp. 1817-1824
    • Freeman, J.D.1
  • 13
    • 60149109931 scopus 로고    scopus 로고
    • Profiling model T-cell metagenomes with short reads
    • Warren R.L., et al. Profiling model T-cell metagenomes with short reads. Bioinformatics 2009, 25:458-464.
    • (2009) Bioinformatics , vol.25 , pp. 458-464
    • Warren, R.L.1
  • 14
    • 85186828812 scopus 로고    scopus 로고
    • CRC Press, A. Mannfred, P. Hollinger (Eds.)
    • Brousseau P., et al. Manual of Immunological Methods 2009, CRC Press, pp. 4, 33-35. 1st edn. A. Mannfred, P. Hollinger (Eds.).
    • (2009) Manual of Immunological Methods
    • Brousseau, P.1
  • 15
    • 33847630761 scopus 로고    scopus 로고
    • Eukaryotic ribosome display with in situ DNA recovery
    • He M., Taussig M.J. Eukaryotic ribosome display with in situ DNA recovery. Nat. Methods 2007, 4:281-288.
    • (2007) Nat. Methods , vol.4 , pp. 281-288
    • He, M.1    Taussig, M.J.2
  • 17
    • 78649893449 scopus 로고    scopus 로고
    • By-passing in vitro screening - next generation sequencing technologies applied to antibody display and in silico candidate selection
    • Ravn U., et al. By-passing in vitro screening - next generation sequencing technologies applied to antibody display and in silico candidate selection. Nucleic Acids Res. 2010, 38:e193.
    • (2010) Nucleic Acids Res. , vol.38
    • Ravn, U.1
  • 18
    • 0037318058 scopus 로고    scopus 로고
    • Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library
    • Feldhaus M.J., et al. Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library. Nat. Biotechnol. 2003, 21:163-170.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 163-170
    • Feldhaus, M.J.1
  • 19
    • 0242551578 scopus 로고    scopus 로고
    • Expressed murine and human CDR-H3 intervals of equal length exhibit distinct repertoires that differ in their amino acid composition and predicted range of structures
    • Zemlin M., et al. Expressed murine and human CDR-H3 intervals of equal length exhibit distinct repertoires that differ in their amino acid composition and predicted range of structures. J. Mol. Biol. 2003, 334:733-749.
    • (2003) J. Mol. Biol. , vol.334 , pp. 733-749
    • Zemlin, M.1
  • 20
    • 73949116413 scopus 로고    scopus 로고
    • Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire
    • Glanville J., et al. Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire. Proc. Natl. Acad. Sci. 2009, 106:20216-20221.
    • (2009) Proc. Natl. Acad. Sci. , vol.106 , pp. 20216-20221
    • Glanville, J.1
  • 21
    • 77956688921 scopus 로고    scopus 로고
    • Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells
    • Reddy S.T., et al. Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells. Nat. Biotechnol. 2010, 28:965-969.
    • (2010) Nat. Biotechnol. , vol.28 , pp. 965-969
    • Reddy, S.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.