ArrayMAPPIT: A screening platform for human protein interactome analysis

Methods in Molecular Biology

Volumn 812, Issue , 2012, Pages 283-294

  Lievens, Sam ^a   Vanderroost, Nele ^a   Defever, Dieter ^a   Van Der Heyden, José ^a   Tavernier, Jan ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

High throughput screening; Interactomics; MAPPIT; Protein protein interaction; Two hybrid

Indexed keywords

PROTEIN;

ANIMAL; ARTICLE; GENETIC TRANSFECTION; GENETICS; HUMAN; INSTRUMENTATION; METABOLISM; METHODOLOGY; PLASMID; PROTEIN ANALYSIS; TIME;

ANIMALS; HUMANS; PLASMIDS; PROTEIN INTERACTION MAPPING; PROTEINS; TIME FACTORS; TRANSFECTION;

MAMMALIA;

EID: 84856269724     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-455-1_17     Document Type: Article

References (17)

1. Figeys, D. (2008) Mapping the human protein interactome Cell Res 18, 716-24.
2. Russell, R. B., and Aloy, P. (2008) Targeting and tinkering with interaction networks Nat Chem Biol 4, 666-73.
3. Sanderson, C. M. (2009) The Cartographers toolbox: building bigger and better human protein interaction networks Brief Funct Genomic Proteomic 8, 1-11.
4. Fields, S. (2009) Interactive learning: Lessons from two hybrids over two decades Proteomics.
5. Burckstummer, T., Bennett, K. L., Preradovic, A., Schutze, G., Hantschel, O., Superti-Furga, G., and Bauch, A. (2006) An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells Nat Methods 3, 1013-9.
6. Tarassov, K., Messier, V., Landry, C. R., Radinovic, S., Serna Molina, M. M., Shames, I., Malitskaya, Y., Vogel, J., Bussey, H., and Michnick, S. W. (2008) An in vivo map of the yeast protein interactome Science 320, 1465-70.
7. Barrios-Rodiles, M., Brown, K. R., Ozdamar, B., Bose, R., Liu, Z., Donovan, R. S., Shinjo, F., Liu, Y., Dembowy, J., Taylor, I. W., Luga, V., Przulj, N., Robinson, M., Suzuki, H., Hayashizaki, Y., Jurisica, I., and Wrana, J. L. (2005) High-throughput mapping of a dynamic signaling network in mammalian cells Science 307, 1621-5.
8. Jones, R. B., Gordus, A., Krall, J. A., and MacBeath, G. (2006) A quantitative protein interaction network for the ErbB receptors using protein microarrays Nature 439, 168-74.
9. Eyckerman, S., Verhee, A., Van der Heyden, J., Lemmens, I., Van Ostade, X., Vandekerckhove, J., and Tavernier, J. (2001) Design and application of a cytokine-receptor-based interaction trap Nature Cell Biology 3, 1114-19.
10. Boxem, M., Maliga, Z., Klitgord, N., Li, N., Lemmens, I., Mana, M., de Lichtervelde, L., Mul, J. D., van de Peut, D., Devos, M., Simonis, N., Yildirim, M. A., Cokol, M., Kao, H. L., de Smet, A. S., Wang, H., Schlaitz, A. L., Hao, T., Milstein, S., Fan, C., Tipsword, M., Drew, K., Galli, M., Rhrissorrakrai, K., Drechsel, D., Koller, D., Roth, F. P., Iakoucheva, L. M., Dunker, A. K., Bonneau, R., Gunsalus, K. C., Hill, D. E., Piano, F., Tavernier, J., van den Heuvel, S., Hyman, A. A., and Vidal, M. (2008) A protein domainbased interactome network for C. elegans early embryogenesis Cell 134, 534-45.
11. Braun, P., Tasan, M., Dreze, M., Barrios-Rodiles, M., Lemmens, I., Yu, H., Sahalie, J. M., Murray, R. R., Roncari, L., de Smet, A. S., Venkatesan, K., Rual, J. F., Vandenhaute, J., Cusick, M. E., Pawson, T., Hill, D. E., Tavernier, J., Wrana, J. L., Roth, F. P., and Vidal, M. (2009) An experimentally derived confi dence score for binary protein-protein interactions Nat Methods 6, 91-7.
12. Simonis, N., Rual, J. F., Carvunis, A. R., Tasan, M., Lemmens, I., Hirozane-Kishikawa, T., Hao, T., Sahalie, J. M., Venkatesan, K., Gebreab, F., Cevik, S., Klitgord, N., Fan, C., Braun, P., Li, N., Ayivi-Guedehoussou, N., Dann, E., Bertin, N., Szeto, D., Dricot, A., Yildirim, M. A., Lin, C., de Smet, A. S., Kao, H. L., Simon, C., Smolyar, A., Ahn, J. S., Tewari, M., Boxem, M., Milstein, S., Yu, H., Dreze, M., Vandenhaute, J., Gunsalus, K. C., Cusick, M. E., Hill, D. E., Tavernier, J., Roth, F. P., and Vidal, M. (2009) Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network Nat Methods 6, 47-54.
13. Venkatesan, K., Rual, J. F., Vazquez, A., Stelzl, U., Lemmens, I., Hirozane-Kishikawa, T., Hao, T., Zenkner, M., Xin, X., Goh, K. I., Yildirim, M. A., Simonis, N., Heinzmann, K., Gebreab, F., Sahalie, J. M., Cevik, S., Simon, C., de Smet, A. S., Dann, E., Smolyar, A., Vinayagam, A., Yu, H., Szeto, D., Borick, H., Dricot, A., Klitgord, N., Murray, R. R., Lin, C., Lalowski, M., Timm, J., Rau, K., Boone, C., Braun, P., Cusick, M. E., Roth, F. P., Hill, D. E., Tavernier, J., Wanker, E. E., Barabasi, A. L., and Vidal, M. (2009) An empirical framework for binary interactome mapping Nat Methods 6, 83-90.
14. Lievens, S., Van der, H. J., Vertenten, E., Plum, J., Vandekerckhove, J., and Tavernier, J. (2004) Design of a fluorescence-activated cell sortingbased Mammalian protein-protein interaction trap Methods Mol Biol 263, 293-310.
15. Lievens, S., Vanderroost, N., Van der Heyden, J., Gesellchen, V., Vidal, M., and Tavernier, J. (2009) Array MAPPIT: high-throughput interactome analysis in mammalian cells J Proteome Res 8, 877-86.
16. Ziauddin, J., and Sabatini, D. M. (2001) Microarrays of cells expressing defi ned cDNAs Nature 411, 107-10.
17. Lamesch, P., Li, N., Milstein, S., Fan, C., Hao, T., Szabo, G., Hu, Z., Venkatesan, K., Bethel, G., Martin, P., Rogers, J., Lawlor, S., McLaren, S., Dricot, A., Borick, H., Cusick, M. E., Vandenhaute, J., Dunham, I., Hill, D. E., and Vidal, M. (2007) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes Genomics 89, 307-15.