메뉴 건너뛰기




Volumn 11, Issue 1, 2012, Pages

Gamma radiation-induced proteome of Deinococcus radiodurans primarily targets DNA repair and oxidative stress alleviation

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; PROTEOME; SINGLE STRANDED DNA BINDING PROTEIN; BACTERIAL DNA; BACTERIAL PROTEIN;

EID: 84856074134     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M111.011734     Document Type: Article
Times cited : (97)

References (49)
  • 1
    • 0038063029 scopus 로고    scopus 로고
    • Proteome analysis by two-dimensional gel electrophoresis and mass spectrometry: Strengths and limitations
    • Beranova-Giorgianni, S. (2003) Proteome analysis by two-dimensional gel electrophoresis and mass spectrometry: strengths and limitations. Trends Anal. Chem. 22, 273-281
    • (2003) Trends Anal. Chem. , vol.22 , pp. 273-281
    • Beranova-Giorgianni, S.1
  • 2
    • 0000217976 scopus 로고
    • Studies on a radio-resistant micrococcus: I. Isolation, morphology, cultural characteristics and resistance to gamma radiation
    • Anderson, A. W., Nordan, H. C., Cain, R. F., Parrish, G., and Duggan, D. (1956) Studies on a radio-resistant micrococcus: I. Isolation, morphology, cultural characteristics and resistance to gamma radiation. Food Technol. 10, 575-578
    • (1956) Food Technol. , vol.10 , pp. 575-578
    • Anderson, A.W.1    Nordan, H.C.2    Cain, R.F.3    Parrish, G.4    Duggan, D.5
  • 3
    • 0030755081 scopus 로고    scopus 로고
    • Against all odds: The survival strategies of Deinococcus radiodurans
    • Battista, J. R. (1997) Against all odds: The survival strategies of Deinococcus radiodurans. Annu. Rev. Microbiol. 51, 203-224
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 203-224
    • Battista, J.R.1
  • 6
    • 0035102449 scopus 로고    scopus 로고
    • Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics
    • DOI 10.1128/MMBR.65.1.44-79.2001
    • Makarova, K. S., Aravind, L., Wolf, Y. I., Tatusov, R. L., Minton, K. W., Koonin, E. V., and Daly, M. J. (2001) Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics. Microbiol. Mol. Biol. Rev. 65, 44-79 (Pubitemid 32204287)
    • (2001) Microbiology and Molecular Biology Reviews , vol.65 , Issue.1 , pp. 44-79
    • Makarova, K.S.1    Aravind, L.2    Wolf, Y.I.3    Tatusov, R.L.4    Minton, K.W.5    Koonin, E.V.6    Daly, M.J.7
  • 8
    • 5144234957 scopus 로고    scopus 로고
    • Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance
    • DOI 10.1534/genetics.104.029249
    • Tanaka, M., Earl, A. M., Howell, H. A., Park, M. J., Eisen, J. A., Peterson, S. N., and Battista, J. R. (2004) Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance. Genetics 168, 21-33 (Pubitemid 39346576)
    • (2004) Genetics , vol.168 , Issue.1 , pp. 21-33
    • Tanaka, M.1    Earl, A.M.2    Howell, H.A.3    Park, M.-J.4    Eisen, J.A.5    Peterson, S.N.6    Battista, J.R.7
  • 10
    • 4744354636 scopus 로고    scopus 로고
    • PprA: A novel protein from Deinococcus radiodurans that stimulates DNA ligation
    • DOI 10.1111/j.1365-2958.2004.04272.x
    • Narumi, I., Satoh, K., Cui, S., Funayama, T., Kitayama, S., and Watanabe, H. (2004) PprA: A novel protein from Deinococcus radiodurans that stimulates DNA ligation. Mol. Microbiol. 54, 278-285 (Pubitemid 39315175)
    • (2004) Molecular Microbiology , vol.54 , Issue.1 , pp. 278-285
    • Narumi, I.1    Satoh, K.2    Cui, S.3    Funayama, T.4    Kitayama, S.5    Watanabe, H.6
  • 11
    • 3242798207 scopus 로고    scopus 로고
    • Vectors for regulated gene expression in the radioresistant bacterium Deinococcus radiodurans
    • DOI 10.1016/j.gene.2004.04.006, PII S0378111904002185
    • Lecointe, F., Coste, G., Sommer, S., and Bailone, A. (2004) Vectors for regulated gene expression in the radioresistant bacterium Deinococcus radiodurans. Gene 336, 25-35 (Pubitemid 38968822)
    • (2004) Gene , vol.336 , Issue.1 , pp. 25-35
    • Lecointe, F.1    Coste, G.2    Sommer, S.3    Bailone, A.4
  • 12
    • 76749109918 scopus 로고    scopus 로고
    • A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans
    • Bentchikou, E., Servant, P., Coste, G., and Sommer, S. (2010) A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans. PLoS Genet. 6, e1000774
    • (2010) PLoS Genet. , vol.6
    • Bentchikou, E.1    Servant, P.2    Coste, G.3    Sommer, S.4
  • 13
    • 84856067374 scopus 로고    scopus 로고
    • website
    • Uniformed Services University of the Health Sciences website, http://www.usuhs.mil/pat/deinococcus/FrontPage-DR-Web-work/ Pages/resistance- phenotypes-of-novel-d.htm
  • 14
    • 0027262177 scopus 로고
    • Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans
    • Gutman, P. D., Fuchs, P., Ouyang, L., and Minton, K. W. (1993) Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans. J. Bacteriol. 175, 3581-3590 (Pubitemid 23163404)
    • (1993) Journal of Bacteriology , vol.175 , Issue.11 , pp. 3581-3590
    • Gutman, P.D.1    Fuchs, P.2    Ouyang, L.3    Minton, K.W.4
  • 17
    • 0035312314 scopus 로고    scopus 로고
    • Translation control: Bridging the gap between genomics and proteomics?
    • DOI 10.1016/S0968-0004(00)01776-X, PII S096800040001776X
    • Pradet-Balade, B., Boulmé, F., Beug, H., Müllner, E. W., and Garcia-Sanz, J. A. (2001) Translation control: Bridging the gap between genomics and proteomics? Trends Biochem. Sci. 26, 225-229 (Pubitemid 32289240)
    • (2001) Trends in Biochemical Sciences , vol.26 , Issue.4 , pp. 225-229
    • Pradet-Balade, B.1    Boulme, F.2    Beug, H.3    Mullner, E.W.4    Garcia-Sanz, J.A.5
  • 18
    • 13244258359 scopus 로고    scopus 로고
    • Proteomic analysis of Deinococcus radiodurans recovering from gamma-irradiation
    • DOI 10.1002/pmic.200300875
    • Zhang, C., Wei, J., Zheng, Z., Ying, N., Sheng, D., and Hua, Y. (2005) Proteomic analysis of Deinococcus radiodurans recovering from gamma- irradiation. Proteomics 5, 138-143 (Pubitemid 40189646)
    • (2005) Proteomics , vol.5 , Issue.1 , pp. 138-143
    • Zhang, C.1    Wei, J.2    Zheng, Z.3    Ying, N.4    Sheng, D.5    Hua, Y.6
  • 19
    • 63049112423 scopus 로고    scopus 로고
    • Deinococcus radiodurans PprI switches on DNA damage response and cellular survival networks after radiation damage
    • Lu, H., Gao, G., Xu, G., Fan, L., Yin, L., Shen, B., and Hua, Y. (2009) Deinococcus radiodurans PprI switches on DNA damage response and cellular survival networks after radiation damage. Mol. Cell. Proteomics. 8, 481-494
    • (2009) Mol. Cell. Proteomics. , vol.8 , pp. 481-494
    • Lu, H.1    Gao, G.2    Xu, G.3    Fan, L.4    Yin, L.5    Shen, B.6    Hua, Y.7
  • 20
    • 3142768316 scopus 로고    scopus 로고
    • Protein recycling is a major component of post-irradiation recovery in Deinococcus radiodurans strain R1
    • DOI 10.1016/j.bbrc.2004.06.062, PII S0006291X04012707
    • Joshi, B., Schmid, R., Altendorf, K., and Apte, S. K. (2004) Protein recycling is a major component of post-irradiation recovery in Deinococcus radiodurans strain R1. Biochem. Biophys. Res. Commun. 320, 1112-1117 (Pubitemid 38916658)
    • (2004) Biochemical and Biophysical Research Communications , vol.320 , Issue.4 , pp. 1112-1117
    • Joshi, B.1    Schmid, R.2    Altendorf, K.3    Apte, S.K.4
  • 21
    • 69249097816 scopus 로고    scopus 로고
    • DdrB protein, an alternative Deinococcus radiodurans Ssb induced by ionizing radiation
    • Norais, C. A., Chitteni-Pattu, S., Wood, E. A., Inman, R. B., and Cox, M. M. (2009) DdrB protein, an alternative Deinococcus radiodurans Ssb induced by ionizing radiation. J. Biol. Chem. 284, 21402-21411
    • (2009) J. Biol. Chem. , vol.284 , pp. 21402-21411
    • Norais, C.A.1    Chitteni-Pattu, S.2    Wood, E.A.3    Inman, R.B.4    Cox, M.M.5
  • 23
    • 78049383484 scopus 로고    scopus 로고
    • Radiation desiccation response motif-like sequences are involved in transcriptional activation of the Deinococcal Ssb gene by ionizing radiation but not by desiccation
    • Ujaoney, A. K., Potnis, A. A., Kane, P., Mukhopadhyaya, R., and Apte, S. K. (2010) Radiation desiccation response motif-like sequences are involved in transcriptional activation of the Deinococcal Ssb gene by ionizing radiation but not by desiccation. J. Bacteriol. 192, 5637-5644
    • (2010) J. Bacteriol. , vol.192 , pp. 5637-5644
    • Ujaoney, A.K.1    Potnis, A.A.2    Kane, P.3    Mukhopadhyaya, R.4    Apte, S.K.5
  • 25
    • 0020580529 scopus 로고
    • Limited proteolysis studies on the Escherichia coli single-stranded DNA binding protein: Evidence for a functionally homologous domain in both the Escherichia coli and T4 DNA binding proteins
    • Williams, K. R., Spicer, E. K., LoPresti, M. B., Guggenheimer, R. A., and Chase, J. W. (1983) Limited proteolysis studies on the Escherichia coli single-stranded DNA binding protein: Evidence for a functionally homologous domain in both the Escherichia coli and T4 DNA binding proteins. J. Biol. Chem. 258, 3346-3355 (Pubitemid 13130245)
    • (1983) Journal of Biological Chemistry , vol.258 , Issue.5 , pp. 3346-3355
    • Williams, K.R.1    Spicer, E.K.2    LoPresti, M.B.3
  • 26
    • 0030014904 scopus 로고    scopus 로고
    • In vitro and in vivo function of the C-terminus of Escherichia coil single-stranded DNA binding protein
    • DOI 10.1093/nar/24.14.2706
    • Curth, U., Genschel, J., Urbanke, C., and Greipel, J. (1996) In vitro and invivo function of the C-terminus of Escherichia coli single-stranded DNA binding protein. Nucleic Acids Res. 24, 2706-2711 (Pubitemid 26239738)
    • (1996) Nucleic Acids Research , vol.24 , Issue.14 , pp. 2706-2711
    • Curth, U.1    Genschel, J.2    Urbanke, C.3    Greipel, J.4
  • 28
    • 0042622251 scopus 로고    scopus 로고
    • Scansite 2.0: Proteome-wide prediction of cell signalling interactions using short sequence motifs
    • DOI 10.1093/nar/gkg584
    • Obenauer, J. C., Cantley, L. C., and Yaffe, M. B. (2003) Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Res. 31, 3635-3641 (Pubitemid 37442212)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3635-3641
    • Obenauer, J.C.1    Cantley, L.C.2    Yaffe, M.B.3
  • 30
    • 77953326057 scopus 로고    scopus 로고
    • The structure of DdrB from Deinococcus: A new fold for single-stranded DNA binding proteins
    • Sugiman-Marangos, S., and Junop, M. S. (2010) The structure of DdrB from Deinococcus: A new fold for single-stranded DNA binding proteins. Nucleic Acids Res. 38, 3432-3440
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3432-3440
    • Sugiman-Marangos, S.1    Junop, M.S.2
  • 31
    • 77953323321 scopus 로고    scopus 로고
    • DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans
    • Xu, G., Lu, H., Wang, L., Chen, H., Xu, Z., Hu, Y., Tian, B., and Hua, Y. (2010) DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans. DNA Repair 9, 805-812
    • (2010) DNA Repair , vol.9 , pp. 805-812
    • Xu, G.1    Lu, H.2    Wang, L.3    Chen, H.4    Xu, Z.5    Hu, Y.6    Tian, B.7    Hua, Y.8
  • 32
    • 0034759324 scopus 로고    scopus 로고
    • The yeast recombinational repair protein Rad59 interacts with Rad52 and stimulates single-strand annealing
    • Davis, A. P., and Symington, L. S. (2001) The yeast recombinational repair protein Rad59 interacts with Rad52 and stimulates single-strand annealing. Genetics 159, 515-525 (Pubitemid 33035096)
    • (2001) Genetics , vol.159 , Issue.2 , pp. 515-525
    • Davis, A.P.1    Symington, L.S.2
  • 34
    • 33645083733 scopus 로고    scopus 로고
    • Limited concentration of RecA delays DNA doublestrand break repair in Deinococcus radiodurans R1
    • Jolivet, E., Lecointe, F., Coste, G., Satoh, K., Narumi, I., Bailone, A., and Sommer, S. (2006) Limited concentration of RecA delays DNA doublestrand break repair in Deinococcus radiodurans R1. Mol. Microbiol. 59, 338-349
    • (2006) Mol. Microbiol. , vol.59 , pp. 338-349
    • Jolivet, E.1    Lecointe, F.2    Coste, G.3    Satoh, K.4    Narumi, I.5    Bailone, A.6    Sommer, S.7
  • 35
    • 0032556898 scopus 로고    scopus 로고
    • Stimulation by Rad52 of yeast Rad51-mediated recombination
    • DOI 10.1038/34943
    • Shinohara, A., and Ogawa, T. (1998) Stimulation by Rad52 of yeast Rad51-mediated recombination. Nature 391, 404-407 (Pubitemid 28093517)
    • (1998) Nature , vol.391 , Issue.6665 , pp. 404-407
    • Shinohara, A.1    Ogawa, T.2
  • 36
    • 0035930342 scopus 로고    scopus 로고
    • Promotion of Dnl4-Catalyzed DNA end-joining by the Rad50/Mre11/Xrs2 and Hdf1/Hdf2 complexes
    • DOI 10.1016/S1097-2765(01)00388-4
    • Chen, L., Trujillo, K., Ramos, W., Sung, P., and Tomkinson, A.E. (2001) Promotion of Dnl4-catalyzed DNA end-joining by the Rad50/Mre11/Xrs2 and Hdf1/Hdf2 complexes. Mol. Cell 8, 1105-1115 (Pubitemid 34031812)
    • (2001) Molecular Cell , vol.8 , Issue.5 , pp. 1105-1115
    • Chen, L.1    Trujillo, K.2    Ramos, W.3    Sung, P.4    Tomkinson, A.E.5
  • 37
    • 77956269639 scopus 로고    scopus 로고
    • Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans
    • Krisko, A., and Radman, M. (2010) Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans. Proc. Natl. Acad. Sci. U.S.A. 107, 14373-14377
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 14373-14377
    • Krisko, A.1    Radman, M.2
  • 39
    • 44349090455 scopus 로고    scopus 로고
    • Involvement of a protein kinase activity inducer in DNA double strand break repair and radioresistance of Deinococcus radiodurans
    • DOI 10.1128/JB.00026-08
    • Rajpurohit, Y. S., Gopalakrishnan, R., and Misra, H. S. (2008) Involvement of a protein kinase activity inducer in DNA double strand break repair and radioresistance of Deinococcus radiodurans. J. Bacteriol. 190, 3948-3954 (Pubitemid 351732874)
    • (2008) Journal of Bacteriology , vol.190 , Issue.11 , pp. 3948-3954
    • Rajpurohit, Y.S.1    Gopalakrishnan, R.2    Misra, H.S.3
  • 40
    • 57349092180 scopus 로고    scopus 로고
    • Suppression of DeltabipA phenotypes in Escherichia coli by abolishment of pseudouridylation at specific sites on the 23S rRNA
    • Krishnan, K., and Flower, A. M. (2008) Suppression of DeltabipA phenotypes in Escherichia coli by abolishment of pseudouridylation at specific sites on the 23S rRNA. J. Bacteriol. 190, 7675-7683
    • (2008) J. Bacteriol. , vol.190 , pp. 7675-7683
    • Krishnan, K.1    Flower, A.M.2
  • 42
    • 70449566969 scopus 로고    scopus 로고
    • Toward understanding the function of the universally conserved GTPase HflX from Escherichia coli: A kinetic approach
    • Shields, M. J., Fischer, J. J., and Wieden, H. J. (2009) Toward understanding the function of the universally conserved GTPase HflX from Escherichia coli: A kinetic approach. Biochemistry 48, 10793-10802
    • (2009) Biochemistry , vol.48 , pp. 10793-10802
    • Shields, M.J.1    Fischer, J.J.2    Wieden, H.J.3
  • 46
    • 0031456632 scopus 로고    scopus 로고
    • Mutation of D. radiodurans in a gene homologous to ruvB of E. coli
    • DOI 10.1016/S0921-8777(97)00048-7, PII S0921877797000487
    • Kitayama, S., Kohoroku, M., Takagi, A., and Itoh. H. (1997) Mutation of D. radiodurans in a gene homologous to ruvB of E. coli. Mutat. Res. 385, 151-157 (Pubitemid 28026804)
    • (1997) Mutation Research - DNA Repair , vol.385 , Issue.2 , pp. 151-157
    • Kitayama, S.1    Kohoroku, M.2    Takagi, A.3    Itoh, H.4
  • 47
    • 77952106953 scopus 로고    scopus 로고
    • The SbcCD complex of Deinococcus radiodurans contributes to radioresistance and DNA strand break repair in vivo and exhibits Mre11-Rad50 type activity in vitro
    • Kamble, V. A., and Misra, H. S. (2010) The SbcCD complex of Deinococcus radiodurans contributes to radioresistance and DNA strand break repair in vivo and exhibits Mre11-Rad50 type activity in vitro. DNA Repair 9, 488-494
    • (2010) DNA Repair , vol.9 , pp. 488-494
    • Kamble, V.A.1    Misra, H.S.2
  • 49
    • 0029832097 scopus 로고    scopus 로고
    • Identification and characterization of uvrA, a DNA repair gene of Deinococcus radiodurans
    • Agostini, H. J., Carroll, J. D., and Minton, K. W. (1996) Identification and characterization of uvrA, a DNA repair gene of Deinococcus radiodurans. J Bacteriol. 178, 6759-6765 (Pubitemid 26404948)
    • (1996) Journal of Bacteriology , vol.178 , Issue.23 , pp. 6759-6765
    • Agostini, H.J.1    Carroll, J.D.2    Minton, K.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.