DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans

DNA Repair

Volumn 9, Issue 7, 2010, Pages 805-812

  Xu, Guangzhi ^a   Lu, Huiming ^a   Wang, Liangyan ^a   Chen, Huan ^a,b   Xu, Zhenjian ^a   Hu, Yihuai ^a   Tian, Bing ^a   Hua, Yuejin ^a  

^a BEIJING HOSPITAL   (China)

^b Zhejiang Institute of Microbiology   (China)

Author keywords

DdrB; Deinococcus radiodurans; RecA independent DNA repair; SSA

Indexed keywords

BACTERIAL PROTEIN; DDRB PROTEIN; RECA PROTEIN; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; DEINOCOCCUS RADIODURANS; DNA REPAIR; IONIZING RADIATION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PULSED FIELD GEL ELECTROPHORESIS; RADIOSENSITIVITY;

BACTERIAL PROTEINS; CLONING, MOLECULAR; DEINOCOCCUS; DNA REPAIR; DNA, SINGLE-STRANDED; RADIATION TOLERANCE; REC A RECOMBINASES;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS;

EID: 77953323321     PISSN: 15687864     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dnarep.2010.04.006     Document Type: Article

References (42)

1. Battista J.R., Park M.J., and McLemore A.E. Inactivation of two homologues of proteins presumed to be involved in the desiccation tolerance of plants sensitizes Deinococcus radiodurans R1 to desiccation. Cryobiology 43 (2001) 133-139
2. Cox M.M., and Battista J.R. Deinococcus radiodurans-the consummate survivor. Nat. Rev. Microbiol. 3 (2005) 882-892
3. Blasius M., Sommer S., and Hubscher U. Deinococcus radiodurans: what belongs to the survival kit?. Crit. Rev. Biochem. Mol. Biol. 43 (2008) 221-238
4. Makarova K.S., Aravind L., Wolf Y.I., Tatusov R.L., Minton K.W., Koonin E.V., and Daly M.J. Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics. Microbiol. Mol. Biol. Rev. 65 (2001) 44-79
5. Daly M.J., and Minton K.W. An alternative pathway of recombination of chromosomal fragments precedes recA-dependent recombination in the radioresistant bacterium Deinococcus radiodurans. J. Bacteriol. 178 (1996) 4461-4471
6. Zahradka K., Slade D., Bailone A., Sommer S., Averbeck D., Petranovic M., Lindner A.B., and Radman M. Reassembly of shattered chromosomes in Deinococcus radiodurans. Nature 443 (2006) 569-573
7. Slade D., Lindner A.B., Paul G., and Radman M. Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans. Cell 136 (2009) 1044-1055
8. Bentchikou E., Servant P., Coste G., and Sommer S. A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans. PLoS Genet. 6 (2010) e1000774
9. Gutman P.D., Carroll J.D., Masters C.I., and Minton K.W. Sequencing, targeted mutagenesis and expression of a recA gene required for the extreme radioresistance of Deinococcus radiodurans. Gene 141 (1994) 31-37
10. Xu G., Wang L., Chen H., Lu H., Ying N., Tian B., and Hua Y. RecO is essential for DNA damage repair in Deinococcus radiodurans. J. Bacteriol. 190 (2008) 2624-2628
11. Rajan R., and Bell C.E. Crystal structure of RecA from Deinococcus radiodurans: insights into the structural basis of extreme radioresistance. J. Mol. Biol. 344 (2004) 951-963
12. Leiros I., Timmins J., Hall D.R., and McSweeney S. Crystal structure and DNA-binding analysis of RecO from Deinococcus radiodurans. EMBO J. 24 (2005) 906-918
13. Makharashvili N., Koroleva O., Bera S., Grandgenett D.P., and Korolev S. A novel structure of DNA repair protein RecO from Deinococcus radiodurans. Structure 12 (2004) 1881-1889
14. Koroleva O., Makharashvili N., Courcelle C.T., Courcelle J., and Korolev S. Structural conservation of RecF and Rad50: implications for DNA recognition and RecF function. EMBO J. 26 (2007) 867-877
15. Lee B.I., Kim K.H., Park S.J., Eom S.H., Song H.K., and Suh S.W. Ring-shaped architecture of RecR: implications for its role in homologous recombinational DNA repair. EMBO J. 23 (2004) 2029-2038
16. Timmins J., Leiros I., and McSweeney S. Crystal structure and mutational study of RecOR provide insight into its mode of DNA binding. EMBO J. 26 (2007) 3260-3271
17. Liu Y., Zhou J., Omelchenko M.V., Beliaev A.S., Venkateswaran A., Stair J., Wu L., Thompson D.K., Xu D., Rogozin I.B., Gaidamakova E.K., Zhai M., Makarova K.S., Koonin E.V., and Daly M.J. Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation. Proc. Natl. Acad. Sci. U.S.A. 100 (2003) 4191-4196
18. Tanaka M., Earl A.M., Howell H.A., Park M.J., Eisen J.A., Peterson S.N., and Battista J.R. Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance. Genetics 168 (2004) 21-33
19. Norais C.A., Chitteni-Pattu S., Wood E.A., Inman R.B., and Cox M.M. DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation. J. Biol. Chem. 284 (2009) 21402-21411
20. Huang L., Hua X., Lu H., Gao G., Tian B., Shen B., and Hua Y. Three tandem HRDC domains have synergistic effect on the RecQ functions in Deinococcus radiodurans. DNA Repair (Amst.) 6 (2007) 167-176
21. Petukhova G., Stratton S.A., and Sung P. Single strand DNA binding and annealing activities in the yeast recombination factor Rad59. J. Biol. Chem. 274 (1999) 33839-33842
22. Kantake N., Madiraju M.V., Sugiyama T., and Kowalczykowski S.C. Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: A common step in genetic recombination. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 15327-15332
23. Shereda R.D., Bernstein D.A., and Keck J.L. A central role for SSB in Escherichia coli RecQ DNA helicase function. J. Biol. Chem. 282 (2007) 19247-19258
24. Carpentieri F., De Felice M., De Falco M., Rossi M., and Pisani F.M. Physical and functional interaction between the mini-chromosome maintenance-like DNA helicase and the single-stranded DNA binding protein from the crenarchaeon Sulfolobus solfataricus. J. Biol. Chem. 277 (2002) 12118-12127
25. Anand S.P., Zheng H., Bianco P.R., Leuba S.H., and Khan S.A. DNA helicase activity of PcrA is not required for the displacement of RecA protein from DNA or inhibition of RecA-mediated strand exchange. J. Bacteriol. 189 (2007) 4502-4509
26. Wang L., Xu G., Chen H., Zhao Y., Xu N., Tian B., and Hua Y. DrRRA: a novel response regulator essential for the extreme radioresistance of Deinococcus radiodurans. Mol. Microbiol. 67 (2008) 1211-1222
27. Harris D.R., Tanaka M., Saveliev S.V., Jolivet E., Earl A.M., Cox M.M., and Battista J.R. Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1. PLoS Biol. 2 (2004) e304
28. Sugiyama T., New J.H., and Kowalczykowski S.C. DNA annealing by RAD52 protein is stimulated by specific interaction with the complex of replication protein A and single-stranded DNA. Proc. Natl. Acad. Sci. U.S.A. 95 (1998) 6049-6054
29. Wu Y., Sugiyama T., and Kowalczykowski S.C. DNA annealing mediated by Rad52 and Rad59 proteins. J. Biol. Chem. 281 (2006) 15441-15449
30. Genschel J., Curth U., and Urbanke C. Interaction of E. coli single-stranded DNA binding protein (SSB) with exonuclease. I. The carboxy-terminus of SSB is the recognition site for the nuclease. Biol. Chem. 381 (2000) 183-192
31. Buss J.A., Kimura Y., and Bianco P.R. RecG interacts directly with SSB: implications for stalled replication fork regression. Nucleic Acids Res. 36 (2008) 7029-7042
32. Suski C., and Marians K.J. Resolution of converging replication forks by RecQ and topoisomerase III. Mol. Cell. 30 (2008) 779-789
33. Earl A.M., Mohundro M.M., Mian I.S., and Battista J.R. The IrrE protein of Deinococcus radiodurans R1 is a novel regulator of recA expression. J. Bacteriol. 184 (2002) 6216-6224
34. Hua Y., Narumi I., Gao G., Tian B., Satoh K., Kitayama S., and Shen B. PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans. Biochem. Biophys. Res. Commun. 306 (2003) 354-360
35. Harris D.R., Ngo K.V., and Cox M.M. The stable, functional core of DdrA from Deinococcus radiodurans R1 does not restore radioresistance in vivo. J. Bacteriol. 190 (2008) 6475-6482
36. Bianco P.R., Tracy R.B., and Kowalczykowski S.C. DNA strand exchange proteins: a biochemical and physical comparison. Front. Biosci. 3 (1998) D570-603
37. Luisi-DeLuca C., and Kolodner R. Purification and characterization of the Escherichia coli RecO protein. Renaturation of complementary single-stranded DNA molecules catalyzed by the RecO protein. J. Mol. Biol. 236 (1994) 124-138
38. Ploquin M., Bransi A., Paquet E.R., Stasiak A.Z., Stasiak A., Yu X., Cieslinska A.M., Egelman E.H., Moineau S., and Masson J.Y. Functional and structural basis for a bacteriophage homolog of human RAD52. Curr. Biol. 18 (2008) 1142-1146
39. Iyer L.M., Koonin E.V., and Aravind L. Classification and evolutionary history of the single-strand annealing proteins, RecT, Redbeta, ERF and RAD52. BMC Genomics 3 (2002) 8
40. Sugiman-Marangos S., and Junop M.S. The structure of DdrB from Deinococcus: a new fold for single-stranded DNA binding proteins. Nucleic Acids Res. (2010) (Advance Access published online on February 2)
41. Singleton M.R., Wentzell L.M., Liu Y., West S.C., and Wigley D.B. Structure of the single-strand annealing domain of human RAD52 protein. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 13492-13497
42. Gutsche I., Vujicic-Zagar A., Siebert X., Servant P., Vannier F., Castaing B., Gallet B., Heulin T., de Groot A., Sommer S., and Serre L. Complex oligomeric structure of a truncated form of DdrA: a protein required for the extreme radiotolerance of Deinococcus. Biochim. Biophys. Acta 1784 (2008) 1050-1058