Comparative genomics and drug resistance of a geographic variant of ST239 methicillin-resistant Staphylococcus aureus emerged in Russia

PLoS ONE

Volumn 7, Issue 1, 2012, Pages

  Yamamoto, Tatsuo ^a   Takano, Tomomi ^a   Higuchi, Wataru ^a   Iwao, Yasuhisa ^a   Singur, Olga ^a,b   Reva, Ivan ^a   Otsuka, Yuta ^c   Nakayashiki, Toru ^c   Mori, Hirotada ^c   Reva, Galina ^b   Kuznetsov, Vladimir ^b   Potapov, Vladimir ^b  

^a NIIGATA UNIVERSITY GRADUATE SCHOOL OF MEDICAL AND DENTAL SCIENCES   (Japan)

^b PACIFIC STATE MEDICAL UNIVERSITY   (Russian Federation)

^c NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHLORAMPHENICOL; CLINDAMYCIN; ERYTHROMYCIN; GENTAMICIN; IMIPENEM; KANAMYCIN; LEVOFLOXACIN; OXACILLIN; RIFAMPICIN; SPECTINOMYCIN; STREPTOMYCIN; SULFAMETHOXAZOLE; TETRACYCLINE; TRIMETHOPRIM;

ADULT; AGED; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM ISOLATION; CLINICAL ARTICLE; COMMUNITY; COMPARATIVE GENOMICS; CONJUGATION; CONTROLLED STUDY; GENOMICS; GENOTYPE; HOSPITAL; HUMAN; MALE; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; NONHUMAN; NONSPECIFIC URETHRITIS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASMID; PULSED FIELD GEL ELECTROPHORESIS; RUSSIAN FEDERATION; TRANSPOSON; DNA SEQUENCE; GENETICS; METHODOLOGY;

METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS;

GENOME, BACTERIAL; GENOMICS; METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS; RUSSIA; SEQUENCE ANALYSIS, DNA;

EID: 84856014940     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0029187     Document Type: Article

References (45)

1. rundmann H, Aires-de-Sousa M, Boyce J, Tiemersma E, (2006) Emergence and resurgence of meticillin-resistant Staphylococcus aureus as a public-health threat. Lancet 368: 874-885.
2. Yamamoto T, Nishiyama A, Takano T, Yabe S, Higuchi W, et al. (2010) Community-acquired methicillin-resistant Staphylococcus aureus: community transmission, pathogenesis, and drug resistance. J Infect Chemother 16: 225-254.
3. Noto MJ, Kreiswirth BN, Monk AB, Archer GL, (2008) Gene acquisition at the insertion site for SCCmec, the genomic island conferring methicillin resistance in Staphylococcus aureus. J Bacteriol 190: 1276-1283.
4. Enright MC, Robinson DA, Randle G, Feil EJ, Grundmann H, et al. (2002) The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA). Proc Natl Acad Sci U S A 99: 7687-7692.
5. Aires de Sousa M, Conceição T, Simas C, de Lencastre H, (2005) Comparison of genetic backgrounds of methicillin-resistant and-susceptible Staphylococcus aureus isolates from Portuguese hospitals and the community. J Clin Microbiol 43: 5150-5157.
6. Harris SR, Feil EJ, Holden MT, Quail MA, Nickerson EK, et al. (2010) Evolution of MRSA during hospital transmission and intercontinental spread. Science 327: 469-474.
7. Robinson DA, Enright MC, (2004) Evolution of Staphylococcus aureus by large chromosomal replacements. J Bacteriol 186: 1060-1064.
8. Holden MT, Lindsay JA, Corton C, Quail MA, Cockfield JD, et al. (2010) Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW). J Bacteriol 192: 888-892.
9. Teixeira LA, Resende CA, Ormonde LR, Rosenbaum R, Figueiredo AM, et al. (1995) Geographic spread of epidemic multiresistant Staphylococcus aureus clone in Brazil. J Clin Microbiol 33: 2400-2404.
10. Sanches IS, Aires de Sousa M, Cleto L, de Campos MB, de Lencastre H, (1996) Tracing the origin of an outbreak of methicillin-resistant Staphylococcus aureus infections in a Portuguese hospital by molecular fingerprinting methods. Microb Drug Resist 2: 319-329.
11. Aires de Sousa M, Sanches IS, Ferro ML, Vaz MJ, Saraiva Z, et al. (1998) Intercontinental spread of a multidrug-resistant methicillin-resistant Staphylococcus aureus clone. J Clin Microbiol 36: 2590-2596.
12. de Lencastre H, Severina EP, Milch H, Thege MK, Tomasz A, (1997) Wide geographic distribution of a unique methicillin-resistant Staphylococcus aureus clone in Hungarian hospitals. Clin Microbiol Infect 3: 289-296.
13. Aires de Sousa M, de Lencstre H, (2004) Bridges from hospitals to the laboratory: genetic portraits of methicillin-resistant Staphylococcus aureus clones. FEMS Immunol Med Microbiol 40: 101-111.
14. Conceição T, Aires-de-Sousa M, Füzi M, Tóth Á, Pászti J, et al. (2007) Replacement of methicillin-resistant Staphylococcus aureus clones in Hungary over time: a 10-year surveillance study. Clin Microbiol Infect 13: 971-979.
15. Witte W, (1999) Antibiotic resistance in gram-positive bacteria: epidemiological aspects. J Antimicrob Chemother 44 (Suppl A): 1-9.
16. Marples RR, Cooke EM, (1985) Workshop on methicillin-resistant Staphylococcus aureus held at the headquarters of the Public Health Laboratory Service on 8 January 1985. J Hosp Infect 6: 342-348.
17. Kerr S, Kerr GE, Mackintosh CA, Marples RR, (1990) A survey of methicillin-resistant Staphylococcus aureus affecting patients in England and Wales. J Hosp Infect 16: 35-48.
18. Oliveira D, Santos-Sanches I, Mato R, Tamayo M, Ribeiro G, et al. (1998) Virtually all methicillin-resistant Staphylococcus aureus (MRSA) infections in the largest Portuguese teaching hospital are caused by two internationally spread multiresistant strains: the 'Iberian' and the 'Brazilian' clones of MRSA. Clin Microbiol Infect 4: 373-384.
19. Oliveira DC, Tomasz A, de Lencastre H, (2001) The evolution of pandemic clones of methicillin-resistant Staphylococcus aureus: identification of two ancestral genetic backgrounds and the associated mec elements. Microb Drug Resist 7: 349-361.
20. Edgeworth JD, Yadegarfar G, Pathak S, Batra R, Cockfield JD, et al. (2007) An outbreak in an intensive care unit of a strain of methicillin-resistant Staphylococcus aureus sequence type 239 associated with an increased rate of vascular access device-related bacteremia. Clin Infect Dis 44: 493-501.
21. From the Centers for Disease Control and Prevention (1999) Four pediatric deaths from community-acquired methicillin-resistant Staphylococcus aureus- Minnesota and North Dakota, 1997-1999. MMWR Morb Mortal Wkly Rep 48: 707-710.
22. Zetola N, Francis JS, Nuermberger EL, Bishai WR, (2005) Community-acquired meticillin-resistant Staphylococcus aureus: an emerging threat. Lancet Infect Dis 5: 275-286.
23. Vandenesch F, Naimi T, Enright MC, Lina G, Nimmo GR, et al. (2003) Community-acquired methicillin-resistant Staphylococcus aureus carrying Panton-Valentine leukocidin genes: worldwide emergence. Emerg Infect Dis 9: 978-984.
24. Takano T, Higuchi W, Yamamoto T, (2009) Superior in vitro activity of carbapenems over anti-methicillin-resistant Staphylococcus aureus (MRSA) and some related antimicrobial agents for community-acquired MRSA but not for hospital-acquired MRSA. J Infect Chemother 15: 54-57.
25. Takizawa Y, Taneike I, Nakagawa S, Oishi T, Nitahara Y, et al. (2005) A Panton-Valentine leucocidin (PVL)-positive community-acquired methicillin-resistant Staphylococcus aureus (MRSA) strain, another such strain carrying a multiple-drug resistance plasmid, and other more-typical PVL-negative MRSA strains found in Japan. J Clin Microbiol 43: 3356-3363.
26. Shi D, Ishii S, Sato T, Yamazaki H, Matsunaga M, et al. (2010) Staphylococcal scalded skin syndrome in an extremely low-birth-weight neonate: molecular characterization and rapid detection by multiplex and real-time PCR of methicillin-resistant Staphylococcus aureus. Pediatr Int 53: 211-217.
27. Takano T, Higuchi W, Otsuka T, Baranovich T, Enany S, et al. (2008) Novel characteristics of community-acquired methicillin-resistant Staphylococcus aureus strains belonging to multilocus sequence type 59 in Taiwan. Antimicrob Agents Chemother 52: 837-845.
28. Gilot P, Lina G, Cochard T, Poutrel B, (2002) Analysis of the genetic variability of genes encoding the RNA III-activating components Agr and TRAP in a population of Staphylococcus aureus strains isolated from cows with mastitis. J Clin Microbiol 40: 4060-4067.
29. Strommenger B, Cuny C, Werner G, Witte W, (2004) Obvious lack of association between dynamics of epidemic methicillin-resistant Staphylococcus aureus in central Europe and agr specificity groups. Eur J Clin Microbiol Infect Dis 23: 15-19.
30. Higuchi W, Hung WC, Takano T, Iwao Y, Ozaki K, et al. (2010) Molecular characteristics of the Taiwanese multiple drug-resistant ST59 clone of Panton-Valentine leucocidin-positive community-acquired methicillin-resistant Staphylococcus aureus from pediatric cellulitis. J Infect Chemother 16: 144-149.
31. Oliveira DC, de Lencastre H, (2002) Multiplex PCR strategy for rapid identification of structural types and variants of the mec element in methicillin-resistant Staphylococcus aureus. Antimicrob Agents Chemother 46: 2155-2161.
32. Zhang K, McClure JA, Elsayed S, Louie T, Conly JM, (2005) Novel multiplex PCR assay for characterization and concomitant subtyping of staphylococcal cassette chromosome mec types I to V in methicillin-resistant Staphylococcus aureus. J Clin Microbiol 43: 5026-5033.
33. International Working Group on the Classification of Staphylococcal Cassette Chromosome Elements (IWG-SCC) (2009) Classification of staphylococcal cassette chromosome mec (SCCmec): guidelines for reporting novel SCCmec elements. Antimicrob Agents Chemother 53: 4961-4967.
34. Yamamoto T, Dohmae S, Saito K, Otsuka T, Takano T, et al. (2006) Molecular characteristics and in vitro susceptibility to antimicrobial agents, including the des-fluoro(6) quinolone DX-619, of Panton-Valentine leucocidin-positive methicillin-resistant Staphylococcus aureus isolates from the community and hospitals. Antimicrob Agents Chemother 50: 4077-4086.
35. Clinical and Laboratory Standards Institute (2008) Performance standards for antimicrobial susceptibility testing: 18th informational supplement M100-S18, Wayne, PA, USA: Clinical and Laboratory Standards Institute.
36. Higuchi W, Takano T, Teng LJ, Yamamoto T, (2008) Structure and specific detection of staphylococcal cassette chromosome mec type VII. Biochem Biophys Res Commun 377: 752-756.
37. Murphy E, Löfdahl S, (1984) Transposition of Tn554 does not generate a target duplication. Nature 307: 292-294.
38. Haroche J, Allignet J, El Solh N, (2002) Tn5406, a new staphylococcal transposon conferring resistance to streptogramin a and related compounds including dalfopristin. Antimicrob Agents Chemother 46: 2337-2343.
39. Kadlec K, Schwarz S, (2010) Identification of the novel dfrK-carrying transposon Tn559 in a porcine methicillin-susceptible Staphylococcus aureus ST398 strain. Antimicrob Agents Chemother 54: 3475-3477.
40. Gómez MI, O'Seaghdha M, Magargee M, Foster TJ, Prince AS, (2006) Staphylococcus aureus protein A activates TNFR1 signaling through conserved IgG binding domains. J Biol Chem 281: 20190-20196.
41. Kahl BC, Peters G, (2007) Microbiology. Mayhem in the lung. Science 315: 1082-1083.
42. de Bentzmann S, Tristan A, Etienne J, Brousse N, Vandenesch F, et al. (2004) Staphylococcus aureus isolates associated with necrotizing pneumonia bind to basement membrane type I and IV collagens and laminin. J Infect Dis 190: 1506-1515.
43. Queck SY, Khan BA, Wang R, Bach TH, Kretschmer D, et al. (2009) Mobile genetic element-encoded cytolysin connects virulence to methicillin resistance in MRSA. PLoS Pathog 5: e1000533.
44. Taneike I, Otsuka T, Dohmae S, Saito K, Ozaki K, et al. (2006) Molecular nature of methicillin-resistant Staphylococcus aureus derived from explosive nosocomial outbreaks of the 1980s in Japan. FEBS Lett 580: 2323-2334.
45. Baranovich T, Potapov V, Yamamoto T, (2007) The first isolation of Panton-Valentine leukocidin (PVL) positive community-acquired methicillin-resistant Staphylococcus aureus (CA-MRSA) in Russia. Euro Surveill 12: E070315 4.