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Volumn 7, Issue 1, 2012, Pages

Differential gene expression between African American and European American colorectal cancer patients

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; ARHGAP6 PROTEIN, HUMAN; BETA CRYSTALLIN; BETA CRYSTALLIN B2; BETA-CRYSTALLIN B2; GUANOSINE TRIPHOSPHATASE ACTIVATING PROTEIN; PROTEIN; WRAP73 PROTEIN, HUMAN;

EID: 84856014922     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0030168     Document Type: Article
Times cited : (78)

References (40)
  • 1
    • 34347388414 scopus 로고    scopus 로고
    • African-American and Caucasian disparities in colorectal cancer mortality and survival by data source: an epidemiologic review
    • Alexander DD, Waterbor J, Hughes T, Funkhouser E, Grizzle W, et al. (2007) African-American and Caucasian disparities in colorectal cancer mortality and survival by data source: an epidemiologic review. Cancer Biomark 3: 301-313.
    • (2007) Cancer Biomark , vol.3 , pp. 301-313
    • Alexander, D.D.1    Waterbor, J.2    Hughes, T.3    Funkhouser, E.4    Grizzle, W.5
  • 3
    • 77957020473 scopus 로고    scopus 로고
    • Relationship of EMAST and microsatellite instability among patients with rectal cancer
    • Devaraj B, Lee A, Cabrera BL, Miyai K, Luo L, et al. (2011) Relationship of EMAST and microsatellite instability among patients with rectal cancer. J Gastrointest Surg 14: 1521-1528.
    • (2011) J Gastrointest Surg , vol.14 , pp. 1521-1528
    • Devaraj, B.1    Lee, A.2    Cabrera, B.L.3    Miyai, K.4    Luo, L.5
  • 4
    • 78049453762 scopus 로고    scopus 로고
    • Genetic heterogeneity in colorectal cancer associations between African and European americans
    • Kupfer SS, Anderson JR, Hooker S, Skol A, Kittles RA, et al. (2011) Genetic heterogeneity in colorectal cancer associations between African and European americans. Gastroenterology 139: 1677-1685 1685e1671-1678.
    • (2011) Gastroenterology , vol.139 , pp. 1677-1685
    • Kupfer, S.S.1    Anderson, J.R.2    Hooker, S.3    Skol, A.4    Kittles, R.A.5
  • 6
    • 70449633061 scopus 로고    scopus 로고
    • Associations between trans fatty acid consumption and colon cancer among Whites and African Americans in the North Carolina colon cancer study I
    • Vinikoor LC, Satia JA, Schroeder JC, Millikan RC, Martin CF, et al. (2009) Associations between trans fatty acid consumption and colon cancer among Whites and African Americans in the North Carolina colon cancer study I. Nutr Cancer 61: 427-436.
    • (2009) Nutr Cancer , vol.61 , pp. 427-436
    • Vinikoor, L.C.1    Satia, J.A.2    Schroeder, J.C.3    Millikan, R.C.4    Martin, C.F.5
  • 7
    • 77955718293 scopus 로고    scopus 로고
    • Antioxidant and DNA methylation-related nutrients and risk of distal colorectal cancer
    • Williams CD, Satia JA, Adair LS, Stevens J, Galanko J, et al. (2010) Antioxidant and DNA methylation-related nutrients and risk of distal colorectal cancer. Cancer Causes Control 21: 1171-1181.
    • (2010) Cancer Causes Control , vol.21 , pp. 1171-1181
    • Williams, C.D.1    Satia, J.A.2    Adair, L.S.3    Stevens, J.4    Galanko, J.5
  • 8
    • 23844446667 scopus 로고    scopus 로고
    • 5,10-methylenetetrahydrofolate reductase 677 and 1298 polymorphisms, folate intake, and microsatellite instability in colon cancer
    • Eaton AM, Sandler R, Carethers JM, Millikan RC, Galanko J, et al. (2005) 5,10-methylenetetrahydrofolate reductase 677 and 1298 polymorphisms, folate intake, and microsatellite instability in colon cancer. Cancer Epidemiol Biomarkers Prev 14: 2023-2029.
    • (2005) Cancer Epidemiol Biomarkers Prev , vol.14 , pp. 2023-2029
    • Eaton, A.M.1    Sandler, R.2    Carethers, J.M.3    Millikan, R.C.4    Galanko, J.5
  • 9
    • 77951627056 scopus 로고    scopus 로고
    • The chromosomal instability pathway in colon cancer
    • Pino MS, Chung DC, (2010) The chromosomal instability pathway in colon cancer. Gastroenterology 138: 2059-2072.
    • (2010) Gastroenterology , vol.138 , pp. 2059-2072
    • Pino, M.S.1    Chung, D.C.2
  • 10
    • 70349741302 scopus 로고    scopus 로고
    • Glutathione S-transferase polymorphisms and survival in African-American and white colorectal cancer patients
    • Jones BA, Christensen AR, Wise JP Sr, Yu H, (2009) Glutathione S-transferase polymorphisms and survival in African-American and white colorectal cancer patients. Cancer Epidemiol 33: 249-256.
    • (2009) Cancer Epidemiol , vol.33 , pp. 249-256
    • Jones, B.A.1    Christensen, A.R.2    Wise Sr., J.P.3    Yu, H.4
  • 11
    • 65249100166 scopus 로고    scopus 로고
    • Prognostic significance of p53 codon 72 polymorphism differs with race in colorectal adenocarcinoma
    • Katkoori VR, Jia X, Shanmugam C, Wan W, Meleth S, et al. (2009) Prognostic significance of p53 codon 72 polymorphism differs with race in colorectal adenocarcinoma. Clin Cancer Res 15: 2406-2416.
    • (2009) Clin Cancer Res , vol.15 , pp. 2406-2416
    • Katkoori, V.R.1    Jia, X.2    Shanmugam, C.3    Wan, W.4    Meleth, S.5
  • 12
    • 80055064637 scopus 로고    scopus 로고
    • Genetic associations in the vitamin d receptor and colorectal cancer in african americans and Caucasians
    • Kupfer SS, Anderson JR, Ludvik AE, Hooker S, Skol A, et al. (2011) Genetic associations in the vitamin d receptor and colorectal cancer in african americans and Caucasians. PLoS One 6: e26123.
    • (2011) PLoS One , vol.6
    • Kupfer, S.S.1    Anderson, J.R.2    Ludvik, A.E.3    Hooker, S.4    Skol, A.5
  • 13
    • 55349087215 scopus 로고    scopus 로고
    • A novel SNP in a vitamin D response element of the CYP24A1 promoter reduces protein binding, transactivation, and gene expression
    • Roff A, Wilson RT, (2008) A novel SNP in a vitamin D response element of the CYP24A1 promoter reduces protein binding, transactivation, and gene expression. J Steroid Biochem Mol Biol 112: 47-54.
    • (2008) J Steroid Biochem Mol Biol , vol.112 , pp. 47-54
    • Roff, A.1    Wilson, R.T.2
  • 14
    • 0037343242 scopus 로고    scopus 로고
    • High incidence of microsatellite instability in colorectal cancer from African Americans
    • Ashktorab H, Smoot DT, Carethers JM, Rahmanian M, Kittles R, et al. (2003) High incidence of microsatellite instability in colorectal cancer from African Americans. Clin Cancer Res 9: 1112-1117.
    • (2003) Clin Cancer Res , vol.9 , pp. 1112-1117
    • Ashktorab, H.1    Smoot, D.T.2    Carethers, J.M.3    Rahmanian, M.4    Kittles, R.5
  • 15
    • 79958178888 scopus 로고    scopus 로고
    • SLC5A8 gene, a transporter of butyrate: a gut flora metabolite, is frequently methylated in African American colon adenomas
    • Brim H, Kumar K, Nazarian J, Hathout Y, Jafarian A, et al. (2011) SLC5A8 gene, a transporter of butyrate: a gut flora metabolite, is frequently methylated in African American colon adenomas. PLoS One 6: e20216.
    • (2011) PLoS One , vol.6
    • Brim, H.1    Kumar, K.2    Nazarian, J.3    Hathout, Y.4    Jafarian, A.5
  • 16
    • 4444281167 scopus 로고    scopus 로고
    • Suitability of stratagene reference RNA for analysis of lymphoid tissues
    • Dybkaer K, Zhou G, Iqbal J, Kelly D, Xiao L, et al. (2004) Suitability of stratagene reference RNA for analysis of lymphoid tissues. Biotechniques 37: 470-472 474.
    • (2004) Biotechniques , vol.37 , pp. 470-472
    • Dybkaer, K.1    Zhou, G.2    Iqbal, J.3    Kelly, D.4    Xiao, L.5
  • 17
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, et al. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30: e15.
    • (2002) Nucleic Acids Res , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5
  • 19
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G, (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 98: 5116-5121.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 20
    • 58149326888 scopus 로고    scopus 로고
    • Gene profiling and pathway analysis of neuroendocrine transdifferentiated prostate cancer cells
    • Mori R, Xiong S, Wang Q, Tarabolous C, Shimada H, et al. (2009) Gene profiling and pathway analysis of neuroendocrine transdifferentiated prostate cancer cells. Prostate 69: 12-23.
    • (2009) Prostate , vol.69 , pp. 12-23
    • Mori, R.1    Xiong, S.2    Wang, Q.3    Tarabolous, C.4    Shimada, H.5
  • 21
    • 78751521504 scopus 로고    scopus 로고
    • Interactions with fibroblasts are distinct in Basal-like and luminal breast cancers
    • Camp JT, Elloumi F, Roman-Perez E, Rein J, Stewart DA, et al. (2011) Interactions with fibroblasts are distinct in Basal-like and luminal breast cancers. Mol Cancer Res 9: 3-13.
    • (2011) Mol Cancer Res , vol.9 , pp. 3-13
    • Camp, J.T.1    Elloumi, F.2    Roman-Perez, E.3    Rein, J.4    Stewart, D.A.5
  • 22
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: RESEARCH0034.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5
  • 23
    • 33846514807 scopus 로고    scopus 로고
    • Scaffold protein Dlgh1 coordinates alternative p38 kinase activation, directing T cell receptor signals toward NFAT but not NF-kappaB transcription factors
    • Round JL, Humphries LA, Tomassian T, Mittelstadt P, Zhang M, et al. (2007) Scaffold protein Dlgh1 coordinates alternative p38 kinase activation, directing T cell receptor signals toward NFAT but not NF-kappaB transcription factors. Nat Immunol 8: 154-161.
    • (2007) Nat Immunol , vol.8 , pp. 154-161
    • Round, J.L.1    Humphries, L.A.2    Tomassian, T.3    Mittelstadt, P.4    Zhang, M.5
  • 24
    • 77950290164 scopus 로고    scopus 로고
    • Remote control of intestinal tumorigenesis by innate immunity
    • Secher T, Gaillot O, Ryffel B, Chamaillard M, (2010) Remote control of intestinal tumorigenesis by innate immunity. Cancer Res 70: 1749-1752.
    • (2010) Cancer Res , vol.70 , pp. 1749-1752
    • Secher, T.1    Gaillot, O.2    Ryffel, B.3    Chamaillard, M.4
  • 25
    • 77952668256 scopus 로고    scopus 로고
    • Mechanisms of intestinal inflammation and development of associated cancers: lessons learned from mouse models
    • Westbrook AM, Szakmary A, Schiestl RH, (2010) Mechanisms of intestinal inflammation and development of associated cancers: lessons learned from mouse models. Mutat Res 705: 40-59.
    • (2010) Mutat Res , vol.705 , pp. 40-59
    • Westbrook, A.M.1    Szakmary, A.2    Schiestl, R.H.3
  • 26
    • 30144443269 scopus 로고    scopus 로고
    • Paradoxical roles of the immune system during cancer development
    • de Visser KE, Eichten A, Coussens LM, (2006) Paradoxical roles of the immune system during cancer development. Nat Rev Cancer 6: 24-37.
    • (2006) Nat Rev Cancer , vol.6 , pp. 24-37
    • de Visser, K.E.1    Eichten, A.2    Coussens, L.M.3
  • 27
    • 38849190111 scopus 로고    scopus 로고
    • Tumor immunobiological differences in prostate cancer between African-American and European-American men
    • Wallace TA, Prueitt RL, Yi M, Howe TM, Gillespie JW, et al. (2008) Tumor immunobiological differences in prostate cancer between African-American and European-American men. Cancer Res 68: 927-936.
    • (2008) Cancer Res , vol.68 , pp. 927-936
    • Wallace, T.A.1    Prueitt, R.L.2    Yi, M.3    Howe, T.M.4    Gillespie, J.W.5
  • 28
    • 84887212459 scopus 로고    scopus 로고
    • Differences in the tumor microenvironment between African-American and European-American breast cancer patients
    • Martin DN, Boersma BJ, Yi M, Reimers M, Howe TM, et al. (2009) Differences in the tumor microenvironment between African-American and European-American breast cancer patients. PLoS One 4: e4531.
    • (2009) PLoS One , vol.4
    • Martin, D.N.1    Boersma, B.J.2    Yi, M.3    Reimers, M.4    Howe, T.M.5
  • 29
    • 0030914095 scopus 로고    scopus 로고
    • Autosomal dominant cerulean cataract is associated with a chain termination mutation in the human beta-crystallin gene CRYBB2
    • Litt M, Carrero-Valenzuela R, LaMorticella DM, Schultz DW, Mitchell TN, et al. (1997) Autosomal dominant cerulean cataract is associated with a chain termination mutation in the human beta-crystallin gene CRYBB2. Hum Mol Genet 6: 665-668.
    • (1997) Hum Mol Genet , vol.6 , pp. 665-668
    • Litt, M.1    Carrero-Valenzuela, R.2    LaMorticella, D.M.3    Schultz, D.W.4    Mitchell, T.N.5
  • 30
    • 33845440685 scopus 로고    scopus 로고
    • Comparative genomic hybridization array analysis and real-time PCR reveals genomic copy number alteration for lung adenocarcinomas
    • Choi JS, Zheng LT, Ha E, Lim YJ, Kim YH, et al. (2006) Comparative genomic hybridization array analysis and real-time PCR reveals genomic copy number alteration for lung adenocarcinomas. Lung 184: 355-362.
    • (2006) Lung , vol.184 , pp. 355-362
    • Choi, J.S.1    Zheng, L.T.2    Ha, E.3    Lim, Y.J.4    Kim, Y.H.5
  • 31
    • 77949502850 scopus 로고    scopus 로고
    • A multicentre phase II gene expression profiling study of putative relationships between tumour biomarkers and clinical response with erlotinib in non-small-cell lung cancer
    • Tan EH, Ramlau R, Pluzanska A, Kuo HP, Reck M, et al. (2010) A multicentre phase II gene expression profiling study of putative relationships between tumour biomarkers and clinical response with erlotinib in non-small-cell lung cancer. Ann Oncol 21: 217-222.
    • (2010) Ann Oncol , vol.21 , pp. 217-222
    • Tan, E.H.1    Ramlau, R.2    Pluzanska, A.3    Kuo, H.P.4    Reck, M.5
  • 32
    • 35848935648 scopus 로고    scopus 로고
    • Parallels between global transcriptional programs of polarizing Caco-2 intestinal epithelial cells in vitro and gene expression programs in normal colon and colon cancer
    • Saaf AM, Halbleib JM, Chen X, Yuen ST, Leung SY, et al. (2007) Parallels between global transcriptional programs of polarizing Caco-2 intestinal epithelial cells in vitro and gene expression programs in normal colon and colon cancer. Mol Biol Cell 18: 4245-4260.
    • (2007) Mol Biol Cell , vol.18 , pp. 4245-4260
    • Saaf, A.M.1    Halbleib, J.M.2    Chen, X.3    Yuen, S.T.4    Leung, S.Y.5
  • 33
    • 0035955658 scopus 로고    scopus 로고
    • Identification and characterization of mammalian mitochondrial tRNA nucleotidyltransferases
    • Nagaike T, Suzuki T, Tomari Y, Takemoto-Hori C, Negayama F, et al. (2001) Identification and characterization of mammalian mitochondrial tRNA nucleotidyltransferases. J Biol Chem 276: 40041-40049.
    • (2001) J Biol Chem , vol.276 , pp. 40041-40049
    • Nagaike, T.1    Suzuki, T.2    Tomari, Y.3    Takemoto-Hori, C.4    Negayama, F.5
  • 35
    • 33947219266 scopus 로고    scopus 로고
    • Large-scale mapping of human protein-protein interactions by mass spectrometry
    • Ewing RM, Chu P, Elisma F, Li H, Taylor P, et al. (2007) Large-scale mapping of human protein-protein interactions by mass spectrometry. Mol Syst Biol 3: 89.
    • (2007) Mol Syst Biol , vol.3 , pp. 89
    • Ewing, R.M.1    Chu, P.2    Elisma, F.3    Li, H.4    Taylor, P.5
  • 36
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, et al. (1999) Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci U S A 96: 6745-6750.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5
  • 37
    • 39749137048 scopus 로고    scopus 로고
    • Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer
    • Kaiser S, Park YK, Franklin JL, Halberg RB, Yu M, et al. (2007) Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer. Genome Biol 8: R131.
    • (2007) Genome Biol , vol.8
    • Kaiser, S.1    Park, Y.K.2    Franklin, J.L.3    Halberg, R.B.4    Yu, M.5
  • 38
    • 34648831071 scopus 로고    scopus 로고
    • Whole genome analysis for liver metastasis gene signatures in colorectal cancer
    • Ki DH, Jeung HC, Park CH, Kang SH, Lee GY, et al. (2007) Whole genome analysis for liver metastasis gene signatures in colorectal cancer. Int J Cancer 121: 2005-2012.
    • (2007) Int J Cancer , vol.121 , pp. 2005-2012
    • Ki, D.H.1    Jeung, H.C.2    Park, C.H.3    Kang, S.H.4    Lee, G.Y.5
  • 39
    • 50149117751 scopus 로고    scopus 로고
    • Chromosome copy number analysis in screening for prognosis-related genomic regions in colorectal carcinoma
    • Kurashina K, Yamashita Y, Ueno T, Koinuma K, Ohashi J, et al. (2008) Chromosome copy number analysis in screening for prognosis-related genomic regions in colorectal carcinoma. Cancer Sci 99: 1835-1840.
    • (2008) Cancer Sci , vol.99 , pp. 1835-1840
    • Kurashina, K.1    Yamashita, Y.2    Ueno, T.3    Koinuma, K.4    Ohashi, J.5
  • 40
    • 0035300437 scopus 로고    scopus 로고
    • Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays
    • Notterman DA, Alon U, Sierk AJ, Levine AJ, (2001) Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays. Cancer Res 61: 3124-3130.
    • (2001) Cancer Res , vol.61 , pp. 3124-3130
    • Notterman, D.A.1    Alon, U.2    Sierk, A.J.3    Levine, A.J.4


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