-
1
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen M.B., Spellman P.T., Brown P.O., Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 1998, 95:14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
2
-
-
0036372484
-
-
Clustering by pattern similarity in large data sets, in: ACM SIGMOD International Conference on Management of Data, Madison, WI
-
H. Wang, W. Wang, J. Yang, P.S. Yu, Clustering by pattern similarity in large data sets, in: ACM SIGMOD International Conference on Management of Data, Madison, WI, 2002, pp. 394-405.
-
(2002)
, pp. 394-405
-
-
Wang, H.1
Wang, W.2
Yang, J.3
Yu, P.S.4
-
3
-
-
84927511887
-
Direct clustering of a data matrix
-
Hartigan J. Direct clustering of a data matrix. J. Am. Stat. Assoc. 1972, 67(337):123-129.
-
(1972)
J. Am. Stat. Assoc.
, vol.67
, Issue.337
, pp. 123-129
-
-
Hartigan, J.1
-
4
-
-
0034566393
-
-
Biclustering of expression data, in: Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology, La Jolla, CA
-
Y. Cheng, G.M. Church, Biclustering of expression data, in: Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology, La Jolla, CA, 2000, pp. 93-103.
-
(2000)
, pp. 93-103
-
-
Cheng, Y.1
Church, G.M.2
-
5
-
-
0037057374
-
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
-
research0059.1-0059.22
-
Gasch A.P., Eisen M.B. Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. Genome Biol. 2002, 3(11). research0059.1-0059.22.
-
(2002)
Genome Biol.
, vol.3
, Issue.11
-
-
Gasch, A.P.1
Eisen, M.B.2
-
6
-
-
11244306358
-
Discovering statistically significant biclusters in gene expression data
-
Tanay A., Sharan R., Shamir R. Discovering statistically significant biclusters in gene expression data. Bioinformatics 2002, 18:136-144.
-
(2002)
Bioinformatics
, vol.18
, pp. 136-144
-
-
Tanay, A.1
Sharan, R.2
Shamir, R.3
-
7
-
-
33645659540
-
Biclustering of expression data with evolutionary computation
-
Divina F., Aguilar-Ruiz J.S. Biclustering of expression data with evolutionary computation. IEEE Trans. Knowl. Data Eng. 2006, 18(5):590-602.
-
(2006)
IEEE Trans. Knowl. Data Eng.
, vol.18
, Issue.5
, pp. 590-602
-
-
Divina, F.1
Aguilar-Ruiz, J.S.2
-
8
-
-
49949105874
-
Mean squared residue based biclustering algorithms
-
Gremalschi S., Altun G. Mean squared residue based biclustering algorithms. Bioinformatics Research and Applications, Fourth International Symposium, Lecture Notes on Computer Science 2008, vol. 4983:232-243.
-
(2008)
Bioinformatics Research and Applications, Fourth International Symposium, Lecture Notes on Computer Science
, vol.4983
, pp. 232-243
-
-
Gremalschi, S.1
Altun, G.2
-
9
-
-
33746228056
-
An improved biclustering method for analyzing gene expression profiles
-
Yang J., Wang H., Wang W., Yu P.S. An improved biclustering method for analyzing gene expression profiles. Int. J. Artif. Intell. Tools 2005, 14:771-790.
-
(2005)
Int. J. Artif. Intell. Tools
, vol.14
, pp. 771-790
-
-
Yang, J.1
Wang, H.2
Wang, W.3
Yu, P.S.4
-
10
-
-
33746098520
-
Application of simulated annealing to the biclustering of gene expression data
-
Bryan K., Cunningham P., Bolshakova N. Application of simulated annealing to the biclustering of gene expression data. IEEE Trans. Inform. Technol. Biomed. 2006, 10(3):519-525.
-
(2006)
IEEE Trans. Inform. Technol. Biomed.
, vol.10
, Issue.3
, pp. 519-525
-
-
Bryan, K.1
Cunningham, P.2
Bolshakova, N.3
-
11
-
-
84855941563
-
Application of cardinality based grasp to the biclustering of gene expression data
-
Das S., Idicula S.M. Application of cardinality based grasp to the biclustering of gene expression data. Int. J. Comput. Appl. 2010, 1(1):44-51.
-
(2010)
Int. J. Comput. Appl.
, vol.1
, Issue.1
, pp. 44-51
-
-
Das, S.1
Idicula, S.M.2
-
12
-
-
77958103052
-
Greedy search-binary PSO hybrid for biclustering gene expression data
-
Das S., Idicula S.M. Greedy search-binary PSO hybrid for biclustering gene expression data. Int. J. Comput. Appl. 2010, 2(3):1-5.
-
(2010)
Int. J. Comput. Appl.
, vol.2
, Issue.3
, pp. 1-5
-
-
Das, S.1
Idicula, S.M.2
-
13
-
-
77954649163
-
A novel clustering and verification based microarray data bi-clustering method
-
Zhang Y., Wang H., Hu Z. A novel clustering and verification based microarray data bi-clustering method. Proc. Int. Conf. Swarm Intell. 2010, 611-618.
-
(2010)
Proc. Int. Conf. Swarm Intell.
, pp. 611-618
-
-
Zhang, Y.1
Wang, H.2
Hu, Z.3
-
14
-
-
65449117238
-
-
Biclustering of microarray data with mospo based on crowding distance, BMC Bioinformatics
-
J. Liu, Z. Li, X. Hu, Y. Chen, Biclustering of microarray data with mospo based on crowding distance, BMC Bioinformatics 10 (S-4) (2009).
-
(2009)
, vol.10
, Issue.S 4
-
-
Liu, J.1
Li, Z.2
Hu, X.3
Chen, Y.4
-
15
-
-
84855918710
-
Moaco biclustering of gene expression data, I
-
Liu J., Li Z., Hu X., Chen Y. Moaco biclustering of gene expression data, I. J. Funct. Inf. Pers. Med. 2010, 3(1):58-72.
-
(2010)
J. Funct. Inf. Pers. Med.
, vol.3
, Issue.1
, pp. 58-72
-
-
Liu, J.1
Li, Z.2
Hu, X.3
Chen, Y.4
-
17
-
-
34547602344
-
Possibilistic approach for biclustering microarray data
-
Cano C., Adarve L., López J., Blanco A. Possibilistic approach for biclustering microarray data. Comput. Biol. Med. 2007, 37(10):1426-1436.
-
(2007)
Comput. Biol. Med.
, vol.37
, Issue.10
, pp. 1426-1436
-
-
Cano, C.1
Adarve, L.2
López, J.3
Blanco, A.4
-
18
-
-
4444367133
-
Biclustering microarray data by Gibbs sampling
-
Sheng Q., Moreau Y., Moor B.D. Biclustering microarray data by Gibbs sampling. Bioinformatics 2003, 19(2):196-205.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 196-205
-
-
Sheng, Q.1
Moreau, Y.2
Moor, B.D.3
-
19
-
-
33645794993
-
Biclustering of gene expression data by non-smooth non-negative matrix factorization
-
doi: 10.1186/1471-2105-7-78
-
Carmona-Saez P., Pascual-Marqui R.D., Tirado F., Carazo J.M., Pascual-Montano A. Biclustering of gene expression data by non-smooth non-negative matrix factorization. BMC Bioinformatics 2006, 7(78). doi: 10.1186/1471-2105-7-78.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.78
-
-
Carmona-Saez, P.1
Pascual-Marqui, R.D.2
Tirado, F.3
Carazo, J.M.4
Pascual-Montano, A.5
-
20
-
-
33646191891
-
-
A linear time biclustering algorithm for time series gene expression data, in: Algorithms in Bioinformatics. International Workshop No. 5, Mallorca, Spain
-
S.C. Madeira, A.L. Oliveira, A linear time biclustering algorithm for time series gene expression data, in: Algorithms in Bioinformatics. International Workshop No. 5, Mallorca, Spain, 2005, pp. 39-52.
-
(2005)
, pp. 39-52
-
-
Madeira, S.C.1
Oliveira, A.L.2
-
21
-
-
76249128966
-
A biclustering algorithm based on a bicluster enumeration tree: application to dna microarray data
-
Ayadi W., Elloumi M., Hao J.-K. A biclustering algorithm based on a bicluster enumeration tree: application to dna microarray data. BioData Min. 2009, 2(1):9.
-
(2009)
BioData Min.
, vol.2
, Issue.1
, pp. 9
-
-
Ayadi, W.1
Elloumi, M.2
Hao, J.-K.3
-
22
-
-
78049484946
-
Iterated local search for biclustering of microarray data
-
Springer-Verlag, Berlin, Heidelberg
-
Ayadi W., Elloumi M., Hao J.-K. Iterated local search for biclustering of microarray data. Proceedings of the 5th International Conference on Pattern Recognition in Bioinformatics, PRIB 2010, 219-229. Springer-Verlag, Berlin, Heidelberg.
-
(2010)
Proceedings of the 5th International Conference on Pattern Recognition in Bioinformatics, PRIB
, pp. 219-229
-
-
Ayadi, W.1
Elloumi, M.2
Hao, J.-K.3
-
23
-
-
78149474968
-
Biclustering of expression microarray data with topic models
-
IEEE Computer Society, Washington, DC, USA
-
Bicego M., Lovato P., Ferrarini A., Delledonne M. Biclustering of expression microarray data with topic models. Proceedings of the 20th International Conference on Pattern Recognition, ICPR 2010, 2728-2731. IEEE Computer Society, Washington, DC, USA.
-
(2010)
Proceedings of the 20th International Conference on Pattern Recognition, ICPR
, pp. 2728-2731
-
-
Bicego, M.1
Lovato, P.2
Ferrarini, A.3
Delledonne, M.4
-
24
-
-
33845864692
-
Computing the maximum similarity bi-clusters of gene expression data
-
Liu X., Wang L. Computing the maximum similarity bi-clusters of gene expression data. Bioinformatics 2007, 23:50-56.
-
(2007)
Bioinformatics
, vol.23
, pp. 50-56
-
-
Liu, X.1
Wang, L.2
-
26
-
-
77956028282
-
Bagged biclustering for microarray data
-
IOS Press, Amsterdam, The Netherlands, URL:
-
Hanczar B., Nadif M. Bagged biclustering for microarray data. Proceeding of the 19th European Conference on Artificial Intelligence 2010, 1131-1132. IOS Press, Amsterdam, The Netherlands, URL: http://portal.acm.org/citation.cfm?id=1860967.1861240.
-
(2010)
Proceeding of the 19th European Conference on Artificial Intelligence
, pp. 1131-1132
-
-
Hanczar, B.1
Nadif, M.2
-
27
-
-
27544440058
-
Shifting and scaling patterns from gene expression data
-
Aguilar-Ruiz J.S. Shifting and scaling patterns from gene expression data. Bioinformatics 2005, 21:3840-3845.
-
(2005)
Bioinformatics
, vol.21
, pp. 3840-3845
-
-
Aguilar-Ruiz, J.S.1
-
28
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie S., Hughes J., Campbell M., Cho R., Church G. Systematic determination of genetic network architecture. Nat. Genet. 1999, 22:281-285.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.2
Campbell, M.3
Cho, R.4
Church, G.5
-
29
-
-
0034598746
-
Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling
-
Alizadeh A.A., Eisen M.B., Davis R.E., et al. Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling. Nature 2000, 403:503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
-
30
-
-
33749620002
-
-
Mining shifting-and-scaling co-regulation patterns on gene expression profiles
-
X. Xu, Y. Lu, A.K.H. Tung, W. Wang, Mining shifting-and-scaling co-regulation patterns on gene expression profiles, 2006, pp. 89-99.
-
(2006)
, pp. 89-99
-
-
Xu, X.1
Lu, Y.2
Tung, A.K.H.3
Wang, W.4
-
31
-
-
1542295220
-
The good of the many outweighs the good of the one: evolutionary multi-objective optimization
-
Corne D., Deb K., Fleming P.J. The good of the many outweighs the good of the one: evolutionary multi-objective optimization. IEEE Connect. Newslett. 2003, 1(1):9-13.
-
(2003)
IEEE Connect. Newslett.
, vol.1
, Issue.1
, pp. 9-13
-
-
Corne, D.1
Deb, K.2
Fleming, P.J.3
-
32
-
-
0003709653
-
-
John Wiley & Sons, Inc., New York
-
Steuer R. Multiple Criteria Optimization: Theory, Computations, and Application 1986, John Wiley & Sons, Inc., New York.
-
(1986)
Multiple Criteria Optimization: Theory, Computations, and Application
-
-
Steuer, R.1
-
33
-
-
85133775397
-
A comprehensive survey of evolutionary-based multiobjective optimization techniques
-
C.A.C. Coello, A comprehensive survey of evolutionary-based multiobjective optimization techniques, Knowl. Inf. Syst. 1 (3) (1999) 129-156.
-
(1999)
Knowl. Inf. Syst.
, vol.1
, Issue.3
, pp. 129-156
-
-
Coello, C.A.C.1
-
34
-
-
47249109476
-
-
Springer-Verlag, New York, Inc., Secaucus, NJ, USA
-
Coello C.A.C., Lamont G.B., Veldhuizen D.A.V. Evolutionary Algorithms for Solving Multi-Objective Problems (Genetic and Evolutionary Computation) 2006, Springer-Verlag, New York, Inc., Secaucus, NJ, USA.
-
(2006)
Evolutionary Algorithms for Solving Multi-Objective Problems (Genetic and Evolutionary Computation)
-
-
Coello, C.A.C.1
Lamont, G.B.2
Veldhuizen, D.A.V.3
-
35
-
-
0142149603
-
Comparison of multi-objective evolutionary algorithms on test functions of different difficulty
-
in: A.S. Wu (Ed.), Proceedings of the 1999 Genetic and Evolutionary Computation Conference. Workshop Program, Orlando, Florida
-
E. Zitzler, K. Deb, L. Thiele, Comparison of multi-objective evolutionary algorithms on test functions of different difficulty, in: A.S. Wu (Ed.), Proceedings of the 1999 Genetic and Evolutionary Computation Conference. Workshop Program, Orlando, Florida, 1999, pp. 121-122.
-
(1999)
, pp. 121-122
-
-
Zitzler, E.1
Deb, K.2
Thiele, L.3
-
38
-
-
0000852513
-
Multiobjective optimization using nondominated sorting in genetic algorithms
-
Srinivas N., Deb K. Multiobjective optimization using nondominated sorting in genetic algorithms. Evol. Comput. 1994, 2(3):221-248.
-
(1994)
Evol. Comput.
, vol.2
, Issue.3
, pp. 221-248
-
-
Srinivas, N.1
Deb, K.2
-
39
-
-
0033318858
-
Multiobjective evolutionary algorithms: a comparative case study and the strength Pareto evolutionary algorithm
-
Zitzler E., Thiele L. Multiobjective evolutionary algorithms: a comparative case study and the strength Pareto evolutionary algorithm. IEEE Trans. Evol. Comput. 1999, 3(4):257-271.
-
(1999)
IEEE Trans. Evol. Comput.
, vol.3
, Issue.4
, pp. 257-271
-
-
Zitzler, E.1
Thiele, L.2
-
41
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
Cho R., Campbell M., Winzeler E., Steinmetz L., Conway A., Wodicka L., Wolfsberg T., Gabrielian A., Landsman D., Lockhart D., Davis R. A genome-wide transcriptional analysis of the mitotic cell cycle. Mol. Cell 1998, 2:65-73.
-
(1998)
Mol. Cell
, vol.2
, pp. 65-73
-
-
Cho, R.1
Campbell, M.2
Winzeler, E.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.7
Gabrielian, A.8
Landsman, D.9
Lockhart, D.10
Davis, R.11
-
42
-
-
0141633042
-
-
Discovery of gene function by expression profiling of the malaria parasite life cycle, Science
-
K.G. Le Roch, Y. Zhou, P.L. Blair, M. Grainger, K.J. Moch, D.J. Haynes, D. La, A.A. Holder, S. Batalov, D.J. Carucci, E.A. Winzeler, Discovery of gene function by expression profiling of the malaria parasite life cycle, Science (5639) (2003) 1503-1508. http://www.doi:10.1126/science.1087025.
-
(2003)
, Issue.5639
, pp. 1503-1508
-
-
Le Roch, K.G.1
Zhou, Y.2
Blair, P.L.3
Grainger, M.4
Moch, K.J.5
Haynes, D.J.6
La, D.7
Holder, A.A.8
Batalov, S.9
Carucci, D.J.10
Winzeler, E.A.11
-
43
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy S.L., Tamayo P., Gaasenbeek M., Sturla L.M., Angelo M., McLaughlin M.E., Kim J.Y.H., Goumnerova L.C., Black P.M., Lau C., Allen J.C., Zagzag D., Olson J.M., Curran T., Wetmore C., Biegel J.A., Poggio T., Mukherjee S., Rifkin R., Califano A., Stolovitzky G., Louis D.N., Mesirov J.P., Lander E.S., Golub T.R. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 2002, 415:436-442.
-
(2002)
Nature
, vol.415
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
Angelo, M.5
McLaughlin, M.E.6
Kim, J.Y.H.7
Goumnerova, L.C.8
Black, P.M.9
Lau, C.10
Allen, J.C.11
Zagzag, D.12
Olson, J.M.13
Curran, T.14
Wetmore, C.15
Biegel, J.A.16
Poggio, T.17
Mukherjee, S.18
Rifkin, R.19
Califano, A.20
Stolovitzky, G.21
Louis, D.N.22
Mesirov, J.P.23
Lander, E.S.24
Golub, T.R.25
more..
-
44
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
Golub T., Slonim D., Tamayo P., Huard C., Gaasenbeek M., Mesirov J., Coller H., Loh M., Downing J., Caligiuri M., Bloomfield C., Lander E. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999, 286:531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.1
Slonim, D.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.6
Coller, H.7
Loh, M.8
Downing, J.9
Caligiuri, M.10
Bloomfield, C.11
Lander, E.12
-
45
-
-
0031915896
-
-
Large-scale temporal gene expression mapping of central nervous system development
-
X.W. et al., Large-scale temporal gene expression mapping of central nervous system development, 1998, pp. 334-339.
-
(1998)
, pp. 334-339
-
-
Wen, X.1
-
46
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
Boyer L., Plath K., Zeitlinger J., Brambrink T., Medeiros L., Lee T., Levine S., Wernig M., Tajonar A., Ray M., et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 2006, 441(7091):349-353.
-
(2006)
Nature
, vol.441
, Issue.7091
, pp. 349-353
-
-
Boyer, L.1
Plath, K.2
Zeitlinger, J.3
Brambrink, T.4
Medeiros, L.5
Lee, T.6
Levine, S.7
Wernig, M.8
Tajonar, A.9
Ray, M.10
-
47
-
-
0034659448
-
An algorithm for clustering cdna fingerprints
-
Hartuv E., Schmitt A., Lange J., Meier-Ewert S., Lehrach H., Shamir R. An algorithm for clustering cdna fingerprints. Genomics 2000, 66:249-256.
-
(2000)
Genomics
, vol.66
, pp. 249-256
-
-
Hartuv, E.1
Schmitt, A.2
Lange, J.3
Meier-Ewert, S.4
Lehrach, H.5
Shamir, R.6
-
48
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology
-
Ashburner M., Ball C., Blake J., Botstein D., Butler H., Cherry J., Davis A., Dolinski K., Dwight S., Eppig J., et al. Gene ontology: tool for the unification of biology. The Gene Ontology. Nat. Genet. 2000, 25:25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.2
Blake, J.3
Botstein, D.4
Butler, H.5
Cherry, J.6
Davis, A.7
Dolinski, K.8
Dwight, S.9
Eppig, J.10
-
49
-
-
80052151544
-
GO-based functional dissimilarity of gene sets
-
doi:10.1186/1471-2105-12-360
-
Diaz-Diaz N., Aguilar-Ruiz J.S. GO-based functional dissimilarity of gene sets. BMC Bioinformatics 2011, 12(1):360+. doi:10.1186/1471-2105-12-360.
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.1
-
-
Diaz-Diaz, N.1
Aguilar-Ruiz, J.S.2
-
50
-
-
47049099111
-
Ontologizer 2.0-a multifunctional tool for go term enrichment analysis and data exploration
-
Bauer S., Grossmann S., Vingron M., Robinson P.N. Ontologizer 2.0-a multifunctional tool for go term enrichment analysis and data exploration. Bioinformatics 2008, 24(14):1650-1651.
-
(2008)
Bioinformatics
, vol.24
, Issue.14
, pp. 1650-1651
-
-
Bauer, S.1
Grossmann, S.2
Vingron, M.3
Robinson, P.N.4
|