Isolation and characterization of influenza A virus (subtype H5N1) that caused the first highly pathogenic avian influenza outbreak in chicken in Bhutan

Veterinary Microbiology

Volumn 155, Issue 1, 2012, Pages 100-105

  Dubey, S C ^a   Dahal, N ^b   Nagarajan, S ^a   Tosh, C ^a   Murugkar, H V ^a   Rinzin, K ^b   Sharma, B ^c   Jain, R ^a   Katare, M ^a   Patil, S ^a   Khandia, R ^a   Syed, Z ^a   Tripathi, S ^a   Behera, P ^a   Kumar, M ^a   Kulkarni, D D ^a   Krishna, Lal ^d  

^a ICAR National Institute of High Security Animal Diseases   (India)

^b National Centre for Animal Health   (Bhutan)

^c Regional Livestock Development Centre   (Bhutan)

^d INDIAN COUNCIL OF AGRICULTURAL RESEARCH   (India)

Author keywords

Bhutan; H5N1 subtype; Highly pathogenic avian influenza; IVP index; Phylogenetic analysis

Indexed keywords

AMINO ACID; HEMAGGLUTININ; MOLECULAR MARKER; NONSTRUCTURAL PROTEIN 1;

ARTICLE; AVIAN INFLUENZA; BHUTAN; CHICKEN; EPIDEMIC; INFLUENZA VIRUS A H5N1; NONHUMAN; PHYLOGENY; PROTEIN CLEAVAGE; SEQUENCE ANALYSIS; VIRUS CHARACTERIZATION; VIRUS ISOLATION; VIRUS VIRULENCE;

ANIMALS; ANTIVIRAL AGENTS; BANGLADESH; BASE SEQUENCE; BHUTAN; CHICKENS; DISEASE OUTBREAKS; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; PHYLOGENY;

AVES; GALLUS GALLUS; INFLUENZA A VIRUS; MAMMALIA;

EID: 84855866255     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2011.08.002     Document Type: Article

References (28)

1. Chakrabarti A.K., Pawar S.D., Cherian S.S., Koratkar S.S., Jadhav S.M., Pal B., Raut S., Thite V., Kode S.S., Keng S.S., Payyapilly B.J., Mullick J., Mishra A.K. Characterization of the influenza A H5N1 viruses of the 2008-2009 outbreaks in India reveals a third introduction and possible endemicity. PLoS ONE 2009, 4(11):e7846. 10.1371/journal.pone.0007846.
2. Chen H., Smith G.J.D., Zhang S.Y., Qin K., Wang J., Li K.S., Webster R.G., Peiris J.S.M., Guan Y. H5N1 virus outbreak in migratory waterfowl. Nature 2005, 436:191-192.
3. Cheung C.L., Rayner J.M., Smith G.J., Wang P., Naipospos T.S., Zhang J., Yuen K.Y., Webster R.G., Peiris J.S., Guan Y., Chen H. Distribution of amantadine-resistant H5N1 avian influenza variants in Asia. J. Infect. Dis. 2006, 193(12):1626-1629.
4. FAO, 2010. H5N1 HPAI, Global overview - February 2010. Prepared by EMPRES/FAO-GLEWS, Issue no. 20.
5. Gabriel G., Dauber B., Wolff T., Planz O., Klenk H.D., Stech J. The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:18590-18595.
6. Gupta R., Jung E., Brunak S. Prediction of N-glycosylation sites in human proteins 2004, Available online at. http://www.cbs.dtu.dk/services/NetNGlyc/.
7. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
8. Hay A.J., Zambon M.C., Wolstenholme A.J., Skehel J.J., Smith M.H. Molecular basis of resistance of influenza A viruses to amantadine. J. Antimicrob. Chemother. 1986, 18(Suppl. B):19-29.
9. Jackson D., Hossain M.J., Hickman D., Perez D.R., Lamb R.A. A new influenza virus virulence determinant: the NS1 protein four C-terminal residues modulate pathogenicity. Proc. Natl. Acad. Sci. U.S.A. 2008, 105(11):4381-4386.
10. Matrosovich M., Zhou N., Kawaoka Y., Webster R. The surface glycoproteins of H5 influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties. J. Virol. 1999, 73:1146-1155.
11. Nagarajan S., Rajukumar K., Tosh C., Ramaswamy V., Purohit K., Saxena G., Behera P., Pattnaik B., Pradhan H.K., Dubey S.C. Isolation and pathotyping of H9N2 avian influenza viruses in Indian poultry. Vet. Microbiol. 2009, 133:154-163.
12. Nagarajan S., Tosh C., Murugkar H.V., Venkatesh G., Katare M., Jain R., Behera P., Khandia R., Tripathi S., Kulkarni D.D., Dubey S.C. Isolation and molecular characterization of a H5N1 virus isolated from a Jungle crow (Corvus macrohynchos) in India. Virus Genes 2010, 41(1):30-36.
13. Obenauer J.C., Denson J., Mehta P.K., Su X., Mukatira S., Finkelstein D.B., Xu X., Wang J., Ma J., Fan Y., Rakestraw K.M., Webster R.G., Hoffmann E., Krauss S., Zheng J., Zhang Z., Naeve C.W. Large-scale sequence analysis of avian influenza isolates. Science 2006, 311:1576-1580.
14. OIE Manual of diagnosis tests and vaccines for terrestrial animals 2008, OIE, Paris, France, (chapter 2.3.4).
15. OIE Update on Highly Pathogenic Avian Influenza in Animals (Type H5 and H7) 2011, Available at:. http://www.oie.int/animal-health-in-the-world/update-on-avian-influenza/2011/.
16. Salzberg S.L., Kingsford C., Cattoli G., Spiro D.J., Janies D.A., Aly M.M., Brown I.H., Couacy-Hymann E., De Mia G.M., Dung H., Guercio A., Joannis T., Maken Ali A.S., Osmani A., Padalino I., Saad M.D., Savić V., Sengamalay N.A., Yingst S., Zaborsky J., Zorman-Rojs O., Ghedin E., Capua I. Genome analysis linking recent European and African influenza (H5N1) viruses. Emerg. Infect. Dis. 2007, 13:713-718.
17. Sheng M., Sala C. PDZ domains and the organization of supramolecular complexes. Annu. Rev. Neurosci. 2001, 24:1-29.
18. Shinya K., Hamm S., Hatta M., Ito H., Ito T., Kawaoka Y. PB2 amino acid at position 627 affects replicative efficiency, but not cell tropism, of Hong Kong H5N1 influenza A viruses in mice. Virology 2004, 320:258-266.
19. Starick E., Beer M., Hoffmann B., Staubach C., Werner O., Globig A., Strebelow G., Grund C., Durban M., Conraths F.J., Mettenleiter T., Harder T. Phylogenetic analyses of highly pathogenic avian influenza virus isolates from Germany in 2006 and 2007 suggest at least three separate introductions of H5N1 virus. Vet. Microbiol. 2008, 128:243-252.
20. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
21. Tosh C., Murugkar H.V., Nagarajan S., Tripathi S., Katare M., Jain R., Khandia R., Syed Z., Behera P., Patil S., Kulkarni D.D., Dubey S.C. Emergence of amantadine-resistant avian influenza H5N1 virus in India. Virus Genes 2011, 42:10-15.
22. Tosh C., Nagarajan S., Murugkar H.V., Jain R., Behera P., Katare M., Kulkarni D.D., Dubey S.C. Phylogenetic evidence of multiple introduction of H5N1 virus in Malda district of West Bengal India in 2008. Vet. Microbiol. 2011, 148:132-139.
23. WHO Recommended Laboratory Tests to Identify Avian Influenza A Virus in Specimens from Humans 2005, http://www.who.int/csr/disease/avianinfluenza/guidelines/en/avian_labtests1.pdf.
24. WHO, 2011a. Cumulative Number of Confirmed Human Cases of Avian Influenza A/(H5N1) Reported to WHO [cited 2011 June 22]. In: http://www.who.int/csr/disease/avian_influenza/country/cases_table_2011_06_22/en/index.html.
25. WHO, 2011b. H5N1 avian influenza: Timeline of major events. In: http://www.who.int/csr/disease/avian_influenza/H5N1_avian_influenza_update.pdf.
26. WHO/FAO/OIE H5N1 Evolution working group, 2008. Towards a unified nomenclature system for the highly pathogenic avian influenza H5N1 viruses. Emerg. Infect. Dis. 14 (). http://www.cdc.gov/EID/content/14/7/e1.html.
27. Xu X., Subbarao K., Cox N.J., Guo Y. Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong. Virology 1999, 261:15-19.
28. Yen H.L., Ilyushina N.A., Salomon R., Hoffmann E., Webster R.G., Govorkova E.A. Neuraminidase inhibitor-resistant recombinant A/Vietnam/1203/04 (H5N1) influenza viruses retain their replication efficiency and pathogenicity in vitro and in vivo. J. Virol. 2007, 81:12418-12426.