메뉴 건너뛰기




Volumn , Issue , 2010, Pages 93-102

Quantitative comparison of genomic-wide protein domain distributions

Author keywords

[No Author keywords available]

Indexed keywords

CO-OCCURRENCE; DNA BINDING DOMAIN; EUKARYA; FUNCTIONAL PROTEINS; GENOME ANNOTATION; PROTEIN ANNOTATION; PROTEIN DOMAINS; QUANTITATIVE COMPARISON; QUANTITATIVE ESTIMATES; REGULATORY MECHANISM; SYSTEMATIC STUDY;

EID: 84855831412     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (1)

References (28)
  • 3
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • C. Burge und S. Karlin. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268:78-94, 1997.
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 5
    • 58149181370 scopus 로고    scopus 로고
    • ExDom: An integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes
    • A Bhasi, P Philip, V Manikandan und P. Senapathy. ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes. Nucleic Acids Res., 37:D703-D711, 2009.
    • (2009) Nucleic Acids Res. , vol.37
    • Bhasi, A.1    Philip, P.2    Manikandan, V.3    Senapathy, P.4
  • 6
    • 33846283385 scopus 로고    scopus 로고
    • The Evolution of gene regulation by Transcription Factors and microRNAs
    • Kevin Chen und Nikolaus Rajewsky. The Evolution of gene regulation by Transcription Factors and microRNAs. Nature Genetics, 8:93-103, 2007.
    • (2007) Nature Genetics , vol.8 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 8
    • 0029937428 scopus 로고    scopus 로고
    • Hidden Markov models
    • S R Eddy. Hidden Markov models. Curr Opin Struct Biol, 6:361-365, 1996.
    • (1996) Curr Opin Struct Biol , vol.6 , pp. 361-365
    • Eddy, S.R.1
  • 9
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • S R Eddy. Profile hidden Markov models. Bioinformatics, 14:755-763, 1998.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 11
    • 49749101118 scopus 로고    scopus 로고
    • Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees
    • Y Go und Y. Niimura. Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees. Mol Biol Evol., 25:1897-1907, 2008.
    • (2008) Mol Biol Evol. , vol.25 , pp. 1897-1907
    • Go, Y.1    Niimura, Y.2
  • 12
    • 39549096663 scopus 로고    scopus 로고
    • Evolutionary history and functional implications of protein domains and their combinations in eukaryotes
    • Masumi Itoh, Jose C Nacher, Kei-ichi Kuma, Susumu Goto und Minoru Kanehisa. Evolutionary history and functional implications of protein domains and their combinations in eukaryotes. Genome Biol., 8:R121, 2007.
    • (2007) Genome Biol. , vol.8
    • Itoh, M.1    Nacher, J.C.2    Kuma, K.3    Goto, S.4    Kanehisa, M.5
  • 13
    • 0034625235 scopus 로고    scopus 로고
    • The impact of comparative genomics on our understanding of evolution
    • E Koonin, L Aravind und A Kondrashov. The impact of comparative genomics on our understanding of evolution. Cell, 101:573-576, 2000.
    • (2000) Cell , vol.101 , pp. 573-576
    • Koonin, E.1    Aravind, L.2    Kondrashov, A.3
  • 14
    • 2942544417 scopus 로고    scopus 로고
    • Gene finding in novel genomes
    • I. Korf. Gene finding in novel genomes. BMC Bioinformatics, 5:59, 2004.
    • (2004) BMC Bioinformatics , vol.5 , pp. 59
    • Korf, I.1
  • 16
    • 13744252347 scopus 로고    scopus 로고
    • Significant expansion of exon-bordering protein domains during animal proteome evolution
    • Mingyi Liu, Heiko Walch, Shaoping Wu und Andrei Grigoriev. Significant expansion of exon-bordering protein domains during animal proteome evolution. Nucleic Acids Res., 33:95-105, 2005.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 95-105
    • Liu, M.1    Walch, H.2    Wu, S.3    Grigoriev, A.4
  • 19
    • 41749116632 scopus 로고    scopus 로고
    • The evolution of core proteins involved in microRNA biogenesis
    • Dennis Murphy, Barry Dancis und James R. Brown. The evolution of core proteins involved in microRNA biogenesis. BMC Evolutionary Biology, 8:92, 2008.
    • (2008) BMC Evolutionary Biology , vol.8 , pp. 92
    • Murphy, D.1    Dancis, B.2    Brown, J.R.3
  • 21
    • 77958130019 scopus 로고    scopus 로고
    • Rapid sequence and expression divergence suggests selection for novel function in primate-specific KRABZNF genes
    • doi:10.1093/molbev/msq157
    • K Nowick, A T Hamilton, H Zhang und L Stubbs. Rapid sequence and expression divergence suggests selection for novel function in primate-specific KRABZNF genes. Mol Biol Evol., 2010. doi:10.1093/molbev/msq157.
    • (2010) Mol Biol Evol.
    • Nowick, K.1    Hamilton, A.T.2    Zhang, H.3    Stubbs, L.4
  • 22
    • 76249088916 scopus 로고    scopus 로고
    • Evolutionary dynamics of olfactory receptor genes in chordates: Interaction between environments and genomic contents
    • Y. Niimura. Evolutionary dynamics of olfactory receptor genes in chordates: interaction between environments and genomic contents. Hum. Genomics, 4:107-118, 2009.
    • (2009) Hum. Genomics , vol.4 , pp. 107-118
    • Niimura, Y.1
  • 23
    • 77953621315 scopus 로고    scopus 로고
    • Innovation in gene regulation: The case of chromatin computation
    • Sonja J Prohaska, Peter F. Stadler und David C. Krakauer. Innovation in Gene Regulation: The Case of Chromatin Computation. J. Theor. Biol., 265:27-44, 2010.
    • (2010) J. Theor. Biol. , vol.265 , pp. 27-44
    • Prohaska, S.J.1    Stadler, P.F.2    Krakauer, D.C.3
  • 25
    • 75949115003 scopus 로고    scopus 로고
    • Detection of new protein domains using co-occurrence: Application to Plasmodium falciparum
    • Nicolas Terrapon, Olivier Gascuel Gascuel, Eric Marechal und Laurent Brehelin. Detection of new protein domains using co-occurrence: application to Plasmodium falciparum. Bioinformatics, 25:3077-3083, 2009.
    • (2009) Bioinformatics , vol.25 , pp. 3077-3083
    • Terrapon, N.1    Gascuel Gascuel, O.2    Marechal, E.3    Brehelin, L.4
  • 26
    • 0041828241 scopus 로고    scopus 로고
    • Scaling laws in the functional content of genomes
    • Erik van Nimwegen. Scaling laws in the functional content of genomes. Trends Genetics, 19:479-484, 2003.
    • (2003) Trends Genetics , vol.19 , pp. 479-484
    • Van Nimwegen, E.1
  • 27
    • 17444407091 scopus 로고    scopus 로고
    • Evolutionary cores of domain co-occurence networks
    • Stefan Wuchty und Eivind Almaas. Evolutionary cores of domain co-occurence networks. BMC Evol. Biol., 5:24, 2005.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 24
    • Wuchty, S.1    Almaas, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.