-
1
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
Apic, G. et al. (2001) Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J. Mol. Biol., 310, 311-325.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 311-325
-
-
Apic, G.1
-
2
-
-
0037246674
-
Plasmodb: the plasmodium genome resource. a database integrating experimental and computational data
-
Bahl, A. et al. (2003) Plasmodb: the plasmodium genome resource. a database integrating experimental and computational data. Nucleic Acids Res., 31, 212-215.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 212-215
-
-
Bahl, A.1
-
3
-
-
18144420835
-
Construction of non-symmetric substitution matrices derived from proteomes with biased amino acid distributions
-
Bastien, O. et al. (2005) Construction of non-symmetric substitution matrices derived from proteomes with biased amino acid distributions. C.R. Biol., 328, 445-453.
-
(2005)
C. R. Biol.
, vol.328
, pp. 445-453
-
-
Bastien, O.1
-
4
-
-
34547914091
-
Automated improvement of domain annotations using context analysis of domain arrangements (aidan)
-
Beaussart, F. et al. (2007)Automated improvement of domain annotations using context analysis of domain arrangements (aidan). Bioinformatics, 23, 1834-1836.
-
(2007)
Bioinformatics
, vol.23
, pp. 1834-1836
-
-
Beaussart, F.1
-
5
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J.R. Stat. Soc., 85, 289-300.
-
(1995)
J. R. Stat. Soc.
, vol.85
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
25444456367
-
Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eucaryotes
-
Callebaut, I. et al. (2005) Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eucaryotes. BMC Genomics, 6, 100.
-
(2005)
BMC Genomics
, vol.6
, pp. 100
-
-
Callebaut, I.1
-
7
-
-
34447506247
-
Comprehensive analysis of co-occurring domain sets in yeast proteins
-
Cohen-Gihon, I. et al. (2007) Comprehensive analysis of co-occurring domain sets in yeast proteins. BMC Genomics, 8, 161.
-
(2007)
BMC Genomics
, vol.8
, pp. 161
-
-
Cohen-Gihon, I.1
-
8
-
-
0037446851
-
Enhanced protein domain discovery by using language modeling techniques from speech recognition
-
Coin, L. et al. (2003) Enhanced protein domain discovery by using language modeling techniques from speech recognition. Proc. Natl Acad. Sci. USA, 100, 4516-4520.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 4516-4520
-
-
Coin, L.1
-
9
-
-
4444339460
-
Comparative genomics of transcriptional control in the human parasite Plasmodium falciparum
-
Coulson, R. et al. (2004) Comparative genomics of transcriptional control in the human parasite Plasmodium falciparum. Genome Res., 14, 1548-1554.
-
(2004)
Genome Res.
, vol.14
, pp. 1548-1554
-
-
Coulson, R.1
-
10
-
-
0003516147
-
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
Cambridge University Press, Cambridge, UK
-
Durbin, R. et al. (1998) Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, Cambridge, UK.
-
(1998)
-
-
Durbin, R.1
-
11
-
-
0031743421
-
Profile hidden Markov models
-
Eddy, S. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.1
-
12
-
-
38549146894
-
The Pfam protein families database
-
Finn, R. et al. (2008) The Pfam protein families database. Nucleic Acids Res., 36, D281-D288.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Finn, R.1
-
13
-
-
48249113702
-
Predicting protein function from domain content
-
Forslund, K. and Sonnhammer, E. (2008) Predicting protein function from domain content. Bioinformatics, 24, 1681-1687.
-
(2008)
Bioinformatics
, vol.24
, pp. 1681-1687
-
-
Forslund, K.1
Sonnhammer, E.2
-
14
-
-
0036796467
-
CDART: protein homology by domain architecture
-
Geer, L. et al. (2002) CDART: protein homology by domain architecture. Genome Res., 12, 1619-1623.
-
(2002)
Genome Res.
, vol.12
, pp. 1619-1623
-
-
Geer, L.1
-
15
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
Gene Ontology Consortium
-
Gene Ontology Consortium (2000) Gene ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
-
16
-
-
0034767547
-
Annotation transfer for genomics: measuring functional divergence in multi-domain proteins
-
Gerstein, M. and Hegyi, H. (2001) Annotation transfer for genomics: measuring functional divergence in multi-domain proteins. Genome Res., 11, 1632-1640.
-
(2001)
Genome Res.
, vol.11
, pp. 1632-1640
-
-
Gerstein, M.1
Hegyi, H.2
-
17
-
-
0040982083
-
A plastid of probable green algal origin in Apicomplexan parasites
-
Kohler, S. et al. (1997) A plastid of probable green algal origin in Apicomplexan parasites. Science, 275, 1485-1489.
-
(1997)
Science
, vol.275
, pp. 1485-1489
-
-
Kohler, S.1
-
19
-
-
37549035873
-
On the detection of functionally coherent groups of protein domains with an extension to protein annotation
-
McLaughlin, W. et al. (2007) On the detection of functionally coherent groups of protein domains with an extension to protein annotation. BMC Bioinformatics, 8, 390.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 390
-
-
McLaughlin, W.1
-
20
-
-
33846116032
-
New developments in the interpro database
-
Mulder, N. et al. (2007) New developments in the interpro database. Nucleic Acid Res., 35, D224-D228.
-
(2007)
Nucleic Acid Res.
, vol.35
-
-
Mulder, N.1
-
21
-
-
0028961335
-
SCOP: a structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A. et al. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.1
-
22
-
-
0035104190
-
Low-complexity regions in plasmodium falciparum proteins
-
Pizzi, E. and Frontali, C. (2001) Low-complexity regions in plasmodium falciparum proteins. Genome Res., 11, 218-229.
-
(2001)
Genome Res.
, vol.11
, pp. 218-229
-
-
Pizzi, E.1
Frontali, C.2
-
23
-
-
0030928378
-
Seq-Gen: an application for the Monte Carlo simulation of dna sequence evolution along phylogenetic trees
-
Rambaut, A. and Grassly, N. (1997) Seq-Gen: an application for the Monte Carlo simulation of dna sequence evolution along phylogenetic trees. Comput. Appl. Biosci., 13, 235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.2
-
24
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson, J. (1981) The anatomy and taxonomy of protein structure. Adv. Protein Chem., 34, 167-339.
-
(1981)
Adv. Protein Chem.
, vol.34
, pp. 167-339
-
-
Richardson, J.1
-
25
-
-
6344283102
-
Predicting subcellular localization via protein motif co-occurrence
-
Scott, M. et al. (2004) Predicting subcellular localization via protein motif co-occurrence. Genome Res., 14, 1957-1966.
-
(2004)
Genome Res.
, vol.14
, pp. 1957-1966
-
-
Scott, M.1
-
26
-
-
0000453490
-
Statistical 'discoveries' and effect size estimation
-
Soriç, B. (1989) Statistical 'discoveries' and effect size estimation. J. Am. Stat. Assoc., 84, 608-610.
-
(1989)
J. Am. Stat. Assoc.
, vol.84
, pp. 608-610
-
-
Soriç, B.1
-
27
-
-
58149191270
-
The universal protein resource (UniProt) 2009
-
UniProt Consortium
-
UniProt Consortium (2009) The universal protein resource (UniProt) 2009. Nucleic Acids Res., 37, D169-D174.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
-
28
-
-
33646268799
-
Domain deletions and substitutions in the modular protein evolution
-
Weiner, J. 3rd et al. (2006) Domain deletions and substitutions in the modular protein evolution. FEBS J., 273, 2037-2047.
-
(2006)
FEBS J.
, vol.273
, pp. 2037-2047
-
-
Weiner J. III1
-
29
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan, S. and Goldman, N. (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol., 18, 691-699.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
|