메뉴 건너뛰기




Volumn 7, Issue 1, 2012, Pages

DNA barcoding for community ecology - how to tackle a hyperdiverse, mostly undescribed melanesian fauna

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; COMMUNITY ECOLOGY; CONTROLLED STUDY; DNA BARCODING; DNA SEQUENCE; FAUNA; GEOGRAPHY; MELANESIA; MORPHOSPECIES; NONHUMAN; PAPUA NEW GUINEA; SPECIES DIVERSITY; WEEVIL; ANIMAL; BIOLOGICAL MODEL; BIOTA; CLUSTER ANALYSIS; DATA BASE; GENETIC MARKER; GENETICS; METHODOLOGY; MOLECULAR GENETICS; SPECIES DIFFERENCE; STATISTICAL MODEL;

EID: 84855830676     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0028832     Document Type: Article
Times cited : (88)

References (46)
  • 1
    • 1942519905 scopus 로고    scopus 로고
    • A taxonomic wish-list for community ecology
    • Gotelli NJ, (2004) A taxonomic wish-list for community ecology. Philos T Roy Soc B 359: 585-97.
    • (2004) Philos T Roy Soc B , vol.359 , pp. 585-597
    • Gotelli, N.J.1
  • 2
    • 43249109296 scopus 로고    scopus 로고
    • Error cascades in the biological sciences: the unwanted consequences of using bad taxonomy in ecology
    • Bortolus A, (2008) Error cascades in the biological sciences: the unwanted consequences of using bad taxonomy in ecology. Ambio 37: 114-118.
    • (2008) Ambio , vol.37 , pp. 114-118
    • Bortolus, A.1
  • 3
    • 34547760289 scopus 로고    scopus 로고
    • Low beta diversity of herbivorous insects in tropical forests
    • Novotny V, Miller SE, Hulcr J, Drew RAI, Basset Y, et al. (2007) Low beta diversity of herbivorous insects in tropical forests. Nature 448: 692-695.
    • (2007) Nature , vol.448 , pp. 692-695
    • Novotny, V.1    Miller, S.E.2    Hulcr, J.3    Drew, R.A.I.4    Basset, Y.5
  • 4
    • 27944449967 scopus 로고    scopus 로고
    • Modern insect extinctions, the neglected majority
    • Dunn RR, (2005) Modern insect extinctions, the neglected majority. Conserv Biol 19: 1030-1036.
    • (2005) Conserv Biol , vol.19 , pp. 1030-1036
    • Dunn, R.R.1
  • 5
    • 0001405656 scopus 로고
    • On the Zoological Geography of the Malay Archipelago
    • Wallace AR, (1860) On the Zoological Geography of the Malay Archipelago. J Proc Linn Soc Lond Zool 4: 172-184.
    • (1860) J Proc Linn Soc Lond Zool , vol.4 , pp. 172-184
    • Wallace, A.R.1
  • 6
    • 0003865491 scopus 로고
    • The Malay Archipelago: The Land of the Orang-Utan, and the Bird of Paradise
    • London, Macmillan & Co
    • Wallace AR, (1869) The Malay Archipelago: The land of the Orang-Utan, and the Bird of Paradise. Anarrative of travel, with studies of man and nature London Macmillan & Co. Vol. 1: 312 p.; Vol. 2.
    • (1869) Anarrative of Travel, with Studies of Man and Nature , vol.1-2
    • Wallace, A.R.1
  • 7
    • 0000731163 scopus 로고
    • Adaptive shift and dispersal in a tropical ant fauna
    • Wilson EO, (1959) Adaptive shift and dispersal in a tropical ant fauna. Evolution 13: 122-144.
    • (1959) Evolution , vol.13 , pp. 122-144
    • Wilson, E.O.1
  • 8
    • 0033788356 scopus 로고    scopus 로고
    • Quantifying biodiversity: experiences with parataxonomists and digital photography in New Guinea and Guyana
    • Basset Y, Nonotny V, Miller SE, Pyle R, (2000) Quantifying biodiversity: experiences with parataxonomists and digital photography in New Guinea and Guyana. Bio Science 50: 899-908.
    • (2000) Bio Science , vol.50 , pp. 899-908
    • Basset, Y.1    Nonotny, V.2    Miller, S.E.3    Pyle, R.4
  • 9
    • 73349105894 scopus 로고    scopus 로고
    • Deep cox1 divergence and hyperdiversity of Trigonopterus weevils in a New Guinea Mountain range (Coleoptera, Curculionidae)
    • Riedel A, Daawia D, Balke M, (2010) Deep cox1 divergence and hyperdiversity of Trigonopterus weevils in a New Guinea Mountain range (Coleoptera, Curculionidae). Zool Scr 39: 63-74.
    • (2010) Zool Scr , vol.39 , pp. 63-74
    • Riedel, A.1    Daawia, D.2    Balke, M.3
  • 10
    • 33749535839 scopus 로고    scopus 로고
    • DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success
    • Meier R, Kwong S, Vaidya G, Ng PKL, (2006) DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Syst Biol 55: 715-728.
    • (2006) Syst Biol , vol.55 , pp. 715-728
    • Meier, R.1    Kwong, S.2    Vaidya, G.3    Ng, P.K.L.4
  • 11
    • 8844224149 scopus 로고    scopus 로고
    • DNA barcoding: promise and pitfalls
    • Moritz C, Cicero C, (2004) DNA barcoding: promise and pitfalls. PLoS Biol 2: e354.
    • (2004) PLoS Biol , vol.2
    • Moritz, C.1    Cicero, C.2
  • 12
    • 33644851129 scopus 로고    scopus 로고
    • DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar
    • Smith MA, Fisher BL, Hebert PDN, (2005) DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar. Philos T Roy Soc B 360: 1825-1834.
    • (2005) Philos T Roy Soc B , vol.360 , pp. 1825-1834
    • Smith, M.A.1    Fisher, B.L.2    Hebert, P.D.N.3
  • 13
    • 80955178782 scopus 로고    scopus 로고
    • DNA barcoding based species delimitation increases species count of Eois (Geometridae) in a well-studied tropical mountain forest by up to 50%
    • Strutzenberger P, Brehm G, Fiedler K, (2010) DNA barcoding based species delimitation increases species count of Eois (Geometridae) in a well-studied tropical mountain forest by up to 50%. Insect Sci 18: 349-362.
    • (2010) Insect Sci , vol.18 , pp. 349-362
    • Strutzenberger, P.1    Brehm, G.2    Fiedler, K.3
  • 14
    • 29144473686 scopus 로고    scopus 로고
    • DNA Barcoding: Error Rates Based on Comprehensive Sampling
    • doi:10.1371/journal.pbio.0030422
    • Meyer CP, Paulay G, (2005) DNA Barcoding: Error Rates Based on Comprehensive Sampling. PLoS Biol 3: e422 doi:10.1371/journal.pbio.0030422.
    • (2005) PLoS Biol , vol.3
    • Meyer, C.P.1    Paulay, G.2
  • 15
    • 68949144973 scopus 로고    scopus 로고
    • DNA barcoding Central Asian butterflies: increasing geographical dimension does not significantly reduce the success of species identification
    • Lukhtanov VA, Sourakov A, Zakharov EV, Hebert PDN, (2009) DNA barcoding Central Asian butterflies: increasing geographical dimension does not significantly reduce the success of species identification. Mol Ecol Resour 9: 1302-1310.
    • (2009) Mol Ecol Resour , vol.9 , pp. 1302-1310
    • Lukhtanov, V.A.1    Sourakov, A.2    Zakharov, E.V.3    Hebert, P.D.N.4
  • 16
    • 77958616382 scopus 로고    scopus 로고
    • The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia
    • doi:10.1371/journal.pone.0012575
    • Francis CM, Borisenko AV, Ivanova NV, Eger JL, Lim BK, et al. (2010) The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia. PLoS ONE 5: e12575 doi:10.1371/journal.pone.0012575.
    • (2010) PLoS ONE , vol.5
    • Francis, C.M.1    Borisenko, A.V.2    Ivanova, N.V.3    Eger, J.L.4    Lim, B.K.5
  • 17
    • 78650830276 scopus 로고    scopus 로고
    • Mitochondrial cox1 sequence data reliably uncover patterns of insect diversity but suffer from high lineage-idiosyncratic error rates
    • doi:10.1371/journal.pone.0014448
    • Hendrich L, Pons J, Ribera I, Balke M, (2010) Mitochondrial cox1 sequence data reliably uncover patterns of insect diversity but suffer from high lineage-idiosyncratic error rates. PLoS ONE 5: e14448 doi:10.1371/journal.pone.0014448.
    • (2010) PLoS ONE , vol.5
    • Hendrich, L.1    Pons, J.2    Ribera, I.3    Balke, M.4
  • 18
    • 79959283692 scopus 로고    scopus 로고
    • How DNA barcodes complement taxonomy and explore species diversity: the case study of a poorly understood marine fauna
    • doi:10.1371/journal.pone.0021326
    • Chen J, Li Q, Kong L, Yu H, (2011) How DNA barcodes complement taxonomy and explore species diversity: the case study of a poorly understood marine fauna. PLoS ONE 6: e21326 doi:10.1371/journal.pone.0021326.
    • (2011) PLoS ONE , vol.6
    • Chen, J.1    Li, Q.2    Kong, L.3    Yu, H.4
  • 20
    • 57449085808 scopus 로고    scopus 로고
    • Phylogeny in cryptic weevils: molecules, morphology and new genera of western Palaearctic Cryptorhynchinae (Coleoptera: Curculionidae)
    • Astrin JJ, Stüben PE, (2008) Phylogeny in cryptic weevils: molecules, morphology and new genera of western Palaearctic Cryptorhynchinae (Coleoptera: Curculionidae). Invertebr Syst 22: 503-522.
    • (2008) Invertebr Syst , vol.22 , pp. 503-522
    • Astrin, J.J.1    Stüben, P.E.2
  • 22
    • 49749132106 scopus 로고    scopus 로고
    • Evaluating nuclear protein-coding genes for phylogenetic utility in beetles
    • Wild AL, Maddison DR, (2008) Evaluating nuclear protein-coding genes for phylogenetic utility in beetles. Mol Biol Evol 48: 877-891.
    • (2008) Mol Biol Evol , vol.48 , pp. 877-891
    • Wild, A.L.1    Maddison, D.R.2
  • 23
    • 20044372514 scopus 로고    scopus 로고
    • A universal primer set for PCR amplification of nuclear histone H4 genes from all animal species
    • Pineau P, Henry M, Suspène R, Marchio A, Dettai A, et al. (2005) A universal primer set for PCR amplification of nuclear histone H4 genes from all animal species. Mol Biol Evol 22: 582-588.
    • (2005) Mol Biol Evol , vol.22 , pp. 582-588
    • Pineau, P.1    Henry, M.2    Suspène, R.3    Marchio, A.4    Dettai, A.5
  • 24
    • 25144511839 scopus 로고    scopus 로고
    • Molecular phylogenetics and evolution of host plant use in the Neotropical rolled leaf 'hispine' beetle genus Cephaloleia (Chevrolat) (Chrysomelidae: Cassidinae)
    • McKenna DD, Farrell BD, (2005) Molecular phylogenetics and evolution of host plant use in the Neotropical rolled leaf 'hispine' beetle genus Cephaloleia (Chevrolat) (Chrysomelidae: Cassidinae). Mol Phylogenet Evol 37: 117-131.
    • (2005) Mol Phylogenet Evol , vol.37 , pp. 117-131
    • McKenna, D.D.1    Farrell, B.D.2
  • 27
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 28
    • 34548444940 scopus 로고    scopus 로고
    • Sequence-based species delimitation for the DNA taxonomy of undescribed insects
    • Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, et al. (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst Biol 55: 595-609.
    • (2006) Syst Biol , vol.55 , pp. 595-609
    • Pons, J.1    Barraclough, T.G.2    Gomez-Zurita, J.3    Cardoso, A.4    Duran, D.P.5
  • 29
    • 53849115779 scopus 로고    scopus 로고
    • The use of mean instead of smallest interspecific distances exaggerates the size of the "barcoding gap" and leads to misidentification
    • Meier R, Zhang G, Ali F, (2008) The use of mean instead of smallest interspecific distances exaggerates the size of the "barcoding gap" and leads to misidentification. Syst Biol 57: 809-813.
    • (2008) Syst Biol , vol.57 , pp. 809-813
    • Meier, R.1    Zhang, G.2    Ali, F.3
  • 30
    • 84856263745 scopus 로고    scopus 로고
    • On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature
    • in press. doi: 10.1111/j.1096-0031.2011.00370.x
    • Srivathsan A, Meier R, (2011) On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature. Cladistics 27 in press. doi: 10.1111/j.1096-0031.2011.00370.x.
    • (2011) Cladistics , vol.27
    • Srivathsan, A.1    Meier, R.2
  • 32
    • 79951480123 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0. Available:
    • R Development Core Team (2010) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0. Available:http://www.R-project.org/.
    • (2010) R: A language and environment for statistical computing
  • 34
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 35
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic Model Averaging
    • Posada D, (2008) jModelTest: Phylogenetic Model Averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 36
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Data analysis in molecular biology and evolution
    • Xia X, Xie Z, (2001) DAMBE: Data analysis in molecular biology and evolution. Journal of Heredity 92: 371-373.
    • (2001) Journal of Heredity , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 37
    • 0002969802 scopus 로고
    • A method of establishing groups of equal amplitude plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons
    • Sørensen T, (1957) A method of establishing groups of equal amplitude plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons. Biologiske Skrifter/ Kongelige Danske Videnskabernes Selskab 5: 1-34.
    • (1957) Biologiske Skrifter/ Kongelige Danske Videnskabernes Selskab , vol.5 , pp. 1-34
    • Sørensen, T.1
  • 38
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
    • Hebert PDN, Ratnasingham S, DeWaard JR, (2003b) Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B 270: 596-599.
    • (2003) Proc R Soc Lond B , vol.270 , pp. 596-599
    • Hebert, P.D.N.1    Ratnasingham, S.2    DeWaard, J.R.3
  • 39
    • 79960816702 scopus 로고    scopus 로고
    • The weevil genus Trigonopterus Fauvel (Coleoptera, Curculionidae) and its synonyms - a taxonomic study on the species tied to its genus-group names
    • Riedel A, (2011) The weevil genus Trigonopterus Fauvel (Coleoptera, Curculionidae) and its synonyms - a taxonomic study on the species tied to its genus-group names. Zootaxa 2977: 1-49.
    • (2011) Zootaxa , vol.2977 , pp. 1-49
    • Riedel, A.1
  • 40
    • 33747445939 scopus 로고    scopus 로고
    • Integrating DNA data and traditional taxonomy to streamline biodiversity assessment: an example from edaphic beetles in the Klamath ecoregion, California, USA
    • Caesar RM, Sörensson M, Cognato AI, (2006) Integrating DNA data and traditional taxonomy to streamline biodiversity assessment: an example from edaphic beetles in the Klamath ecoregion, California, USA. Diversity and Distributions 12: 483-489.
    • (2006) Diversity and Distributions , vol.12 , pp. 483-489
    • Caesar, R.M.1    Sörensson, M.2    Cognato, A.I.3
  • 41
    • 77951729649 scopus 로고    scopus 로고
    • Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter?
    • doi:10.1890/09-0267.1
    • Dexter KG, Pennington TD, Cunningham CW, (2010) Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter? Ecol Monogr 80: 267-286 doi:10.1890/09-0267.1.
    • (2010) Ecol Monogr , vol.80 , pp. 267-286
    • Dexter, K.G.1    Pennington, T.D.2    Cunningham, C.W.3
  • 42
    • 77953948511 scopus 로고    scopus 로고
    • One of a thousand - a new species of Trigonopterus (Coleoptera, Curculionidae, Cryptorhynchinae) from New Guinea
    • Riedel A, (2010) One of a thousand- a new species of Trigonopterus (Coleoptera, Curculionidae, Cryptorhynchinae) from New Guinea. Zootaxa 2403: 59-68.
    • (2010) Zootaxa , vol.2403 , pp. 59-68
    • Riedel, A.1
  • 43
    • 77953130095 scopus 로고    scopus 로고
    • DNA-based taxonomy of larval stages reveals huge unknown species diversity in neotropical seed weevils (genus Conotrachelus): relevance to evolutionary ecology
    • Pinzón-Navarro S, Barrios H, Múrria C, Lyal CHC, Vogler AP, (2010) DNA-based taxonomy of larval stages reveals huge unknown species diversity in neotropical seed weevils (genus Conotrachelus): relevance to evolutionary ecology. Mol Phylogenet Evol 56: 281-293.
    • (2010) Mol Phylogenet Evol , vol.56 , pp. 281-293
    • Pinzón-Navarro, S.1    Barrios, H.2    Múrria, C.3    Lyal, C.H.C.4    Vogler, A.P.5
  • 44
    • 50449102560 scopus 로고    scopus 로고
    • Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology and collections
    • Smith MA, Rodriguez JJ, Whitfield JB, Deans AR, Janzen DH, et al. (2008) Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology and collections. Proc Natl Acad Sci U S A 105: 12359-12364.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 12359-12364
    • Smith, M.A.1    Rodriguez, J.J.2    Whitfield, J.B.3    Deans, A.R.4    Janzen, D.H.5
  • 45
    • 78149468555 scopus 로고    scopus 로고
    • Females do count: documenting Chironomidae (Diptera) species diversity using DNA barcoding
    • Ekrem T, Stur E, Hebert PDN, (2010) Females do count: documenting Chironomidae (Diptera) species diversity using DNA barcoding. Org Divers Evol 10: 397-408.
    • (2010) Org Divers Evol , vol.10 , pp. 397-408
    • Ekrem, T.1    Stur, E.2    Hebert, P.D.N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.