-
1
-
-
85011936076
-
Riboswitch RNAs: regulation of gene expression by direct monitoring of a physiological signal
-
Smith A.M., Fuchs R.T., Grundy F.J., Henkin T.M. (2010) Riboswitch RNAs: regulation of gene expression by direct monitoring of a physiological signal. RNA Biol;7:104-110.
-
(2010)
RNA Biol
, vol.7
, pp. 104-110
-
-
Smith, A.M.1
Fuchs, R.T.2
Grundy, F.J.3
Henkin, T.M.4
-
2
-
-
78049276834
-
Ribozymes and riboswitches: modulation of RNA function by small molecules
-
Zhang J., Lau M.W., Ferre-D'Amare A.R. (2010) Ribozymes and riboswitches: modulation of RNA function by small molecules. Biochemistry;49:9123-9132.
-
(2010)
Biochemistry
, vol.49
, pp. 9123-9132
-
-
Zhang, J.1
Lau, M.W.2
Ferre-D'Amare, A.R.3
-
3
-
-
71549138669
-
The T box mechanism: tRNA as a regulatory molecule
-
Green N.J., Grundy F.J., Henkin T.M. (2010) The T box mechanism: tRNA as a regulatory molecule. FEBS Lett;584:318-324.
-
(2010)
FEBS Lett
, vol.584
, pp. 318-324
-
-
Green, N.J.1
Grundy, F.J.2
Henkin, T.M.3
-
5
-
-
33745613531
-
tRNA regulation of gene expression: interactions of an mRNA 5'-UTR with a regulatory tRNA
-
Nelson A., Henkin T.M., Agris P.F. (2006) tRNA regulation of gene expression: interactions of an mRNA 5'-UTR with a regulatory tRNA. RNA;12:1254-1261.
-
(2006)
RNA
, vol.12
, pp. 1254-1261
-
-
Nelson, A.1
Henkin, T.M.2
Agris, P.F.3
-
6
-
-
63849299263
-
Biochemical features and functional implications of the RNA-based T box regulatory mechanism
-
Gutierrez-Preciado A., Henkin T.M., Grundy F.J., Yanofsky C., Merino E. (2009) Biochemical features and functional implications of the RNA-based T box regulatory mechanism. Microbiol Mol Biol Rev;73:36-61.
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, pp. 36-61
-
-
Gutierrez-Preciado, A.1
Henkin, T.M.2
Grundy, F.J.3
Yanofsky, C.4
Merino, E.5
-
7
-
-
41649115061
-
Comparative genomic analysis of T-box regulatory systems in bacteria
-
Vitreschak A.G., Mironov A.A., Lyubetsky V.A., Gelfand M.S. (2008) Comparative genomic analysis of T-box regulatory systems in bacteria. RNA;14:717-735.
-
(2008)
RNA
, vol.14
, pp. 717-735
-
-
Vitreschak, A.G.1
Mironov, A.A.2
Lyubetsky, V.A.3
Gelfand, M.S.4
-
8
-
-
48649110623
-
An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters
-
Wels M., Kormelink T.G., Kleerebezem M., Siezen R.J., Francke C. (2008) An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters. BMC Genomics;9:330-345.
-
(2008)
BMC Genomics
, vol.9
, pp. 330-345
-
-
Wels, M.1
Kormelink, T.G.2
Kleerebezem, M.3
Siezen, R.J.4
Francke, C.5
-
9
-
-
12344255940
-
Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene
-
Grundy F.J., Yousef M.R., Henkin T.M. (2005) Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene. J Mol Biol;346:73-81.
-
(2005)
J Mol Biol
, vol.346
, pp. 73-81
-
-
Grundy, F.J.1
Yousef, M.R.2
Henkin, T.M.3
-
10
-
-
3843118724
-
Kinetic analysis of tRNA-directed transcription antitermination of the Bacillus subtilis glyQS gene in vitro
-
Grundy F.J., Henkin T.M. (2004) Kinetic analysis of tRNA-directed transcription antitermination of the Bacillus subtilis glyQS gene in vitro. J Bacteriol;186:5392-5399.
-
(2004)
J Bacteriol
, vol.186
, pp. 5392-5399
-
-
Grundy, F.J.1
Henkin, T.M.2
-
11
-
-
15944405778
-
Fluorescence resonance energy transfer studies of aminoglycoside binding to a T box antiterminator RNA
-
Means J.A., Hines J.V. (2005) Fluorescence resonance energy transfer studies of aminoglycoside binding to a T box antiterminator RNA. Bioorg Med Chem Lett;15:2169-2172.
-
(2005)
Bioorg Med Chem Lett
, vol.15
, pp. 2169-2172
-
-
Means, J.A.1
Hines, J.V.2
-
12
-
-
33646846818
-
Structure activity studies of oxazolidinone analogs as RNA-binding agents
-
Means J.A., Katz S.J., Nayek A., Anupam R., Hines J.V., Bergmeier S.C. (2006) Structure activity studies of oxazolidinone analogs as RNA-binding agents. Bioorg Med Chem Lett;16: 3600-3604.
-
(2006)
Bioorg Med Chem Lett
, vol.16
-
-
Means, J.A.1
Katz, S.J.2
Nayek, A.3
Anupam, R.4
Hines, J.V.5
Bergmeier, S.C.6
-
13
-
-
44649108859
-
4,5-disubstituted oxazolidinones: high affinity molecular effectors of RNA function
-
Anupam R., Bergmeier S.C., Green N.J., Grundy F.J., Henkin T.M., Means J.A., et al. (2008) 4, 5-disubstituted oxazolidinones: high affinity molecular effectors of RNA function. Bioorg Med Chem Lett;18:3541-3544.
-
(2008)
Bioorg Med Chem Lett
, vol.18
, pp. 3541-3544
-
-
Anupam, R.1
Bergmeier, S.C.2
Green, N.J.3
Grundy, F.J.4
Henkin, T.M.5
Means, J.A.6
-
14
-
-
77954548244
-
Library of 1,4-disubstituted 1,2,3-triazole analogs of oxazolidinone RNA-binding agents
-
Acquaah-Harrison G., Zhou S., Hines J.V., Bergmeier S.C. (2010) Library of 1, 4-disubstituted 1, 2, 3-triazole analogs of oxazolidinone RNA-binding agents. J Comb Chem;12:491-496.
-
(2010)
J Comb Chem
, vol.12
, pp. 491-496
-
-
Acquaah-Harrison, G.1
Zhou, S.2
Hines, J.V.3
Bergmeier, S.C.4
-
16
-
-
80053902052
-
Synthesis and stereospecificity of 4,5-disubstituted oxazolidinone ligands binding to T-box riboswitch RNA
-
Orac C.M., Zhou S., Means J.A., Boehme D., Bergmeier S.C., Hines J.V. (2011) Synthesis and stereospecificity of 4, 5-disubstituted oxazolidinone ligands binding to T-box riboswitch RNA. J Med Chem;54:6786-6795.
-
(2011)
J Med Chem
, vol.54
, pp. 6786-6795
-
-
Orac, C.M.1
Zhou, S.2
Means, J.A.3
Boehme, D.4
Bergmeier, S.C.5
Hines, J.V.6
-
17
-
-
0029149105
-
Melting studies of RNA unfolding and RNA-ligand interactions
-
Draper D.E., Gluick T.C. (1995) Melting studies of RNA unfolding and RNA-ligand interactions. Methods Enzymol;259:281-305.
-
(1995)
Methods Enzymol
, vol.259
, pp. 281-305
-
-
Draper, D.E.1
Gluick, T.C.2
-
18
-
-
0037082440
-
In vitro structure-function studies of the Bacillus subtilis tyrS mRNA antiterminator: evidence for factor independent tRNA acceptor stem binding specificity
-
Gerdeman M.S., Henkin T.M., Hines J.V. (2002) In vitro structure-function studies of the Bacillus subtilis tyrS mRNA antiterminator: evidence for factor independent tRNA acceptor stem binding specificity. Nucleic Acids Res;30:1065-1072.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1065-1072
-
-
Gerdeman, M.S.1
Henkin, T.M.2
Hines, J.V.3
-
19
-
-
24044460756
-
Molecular beacon: a multitask probe
-
Goel G., Kumar A., Puniya A.K., Chen W., Singh K. (2005) Molecular beacon: a multitask probe. J Appl Microbiol;99:435-442.
-
(2005)
J Appl Microbiol
, vol.99
, pp. 435-442
-
-
Goel, G.1
Kumar, A.2
Puniya, A.K.3
Chen, W.4
Singh, K.5
-
20
-
-
0036582707
-
High throughput measurement of duplex, triplex and quadruplex melting curves using molecular beacons and a LightCycler
-
Darby R.A., Sollogoub M., McKeen C., Brown L., Risitano A., Brown N., et al. (2002) High throughput measurement of duplex, triplex and quadruplex melting curves using molecular beacons and a LightCycler. Nucleic Acids Res;30:e39.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Darby, R.A.1
Sollogoub, M.2
McKeen, C.3
Brown, L.4
Risitano, A.5
Brown, N.6
-
21
-
-
34548327151
-
Identifications of tau stem loop RNA stabilizers
-
Donahue C.P., Ni J., Rozners E., Glicksman M.A., Wolfe M.S. (2007) Identifications of tau stem loop RNA stabilizers. J Biomol Screen;12:789-799.
-
(2007)
J Biomol Screen
, vol.12
, pp. 789-799
-
-
Donahue, C.P.1
Ni, J.2
Rozners, E.3
Glicksman, M.A.4
Wolfe, M.S.5
-
22
-
-
84855417354
-
Effects of fluorescent dyes, quenchers, and dangling ends on the thermodynamic stability of DNA duplexes
-
Owczarzy R., Moreira B.G., You Y. (2004) Effects of fluorescent dyes, quenchers, and dangling ends on the thermodynamic stability of DNA duplexes. Biophysical J;86:310A.
-
(2004)
Biophysical J
, vol.86
-
-
Owczarzy, R.1
Moreira, B.G.2
You, Y.3
-
23
-
-
44449177729
-
Interactive fluorophore and quencher pairs for labeling fluorescent nucleic acid hybridization probes
-
Marras S.A.E. (2008) Interactive fluorophore and quencher pairs for labeling fluorescent nucleic acid hybridization probes. Molecular Biotech;38:247-255.
-
(2008)
Molecular Biotech
, vol.38
, pp. 247-255
-
-
Marras, S.A.E.1
-
24
-
-
0024804759
-
Absorbance melting curves of RNA
-
Puglisi J.D., Tinoco I. Jr (1989) Absorbance melting curves of RNA. Methods Enzymol;180:304-325.
-
(1989)
Methods Enzymol
, vol.180
, pp. 304-325
-
-
Puglisi, J.D.1
Tinoco Jr, I.2
-
25
-
-
11144297638
-
Effects of fluorescent dyes, quenchers, and dangling ends on DNA duplex stability
-
Moreira B.G., You Y., Behlke M.A., Owczarzy R. (2005) Effects of fluorescent dyes, quenchers, and dangling ends on DNA duplex stability. Biochem Biophys Res Commun;327:473-484.
-
(2005)
Biochem Biophys Res Commun
, vol.327
, pp. 473-484
-
-
Moreira, B.G.1
You, Y.2
Behlke, M.A.3
Owczarzy, R.4
-
26
-
-
1642380887
-
Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures
-
Owczarzy R., You Y., Moreira B.G., Manthey J.A., Huang L.Y., Behlke M.A., et al. (2004) Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures. Biochemistry;43:3537-3554.
-
(2004)
Biochemistry
, vol.43
, pp. 3537-3554
-
-
Owczarzy, R.1
You, Y.2
Moreira, B.G.3
Manthey, J.A.4
Huang, L.Y.5
Behlke, M.A.6
-
28
-
-
70349734575
-
Fluorescence probing of T box antiterminator RNA: insights into riboswitch discernment of the tRNA discriminator base
-
Means J.A., Simson C.M., Zhou S., Rachford A.A., Rack J., Hines J.V. (2009) Fluorescence probing of T box antiterminator RNA: insights into riboswitch discernment of the tRNA discriminator base. Biochem Biophys Res Commun;389:616-621.
-
(2009)
Biochem Biophys Res Commun
, vol.389
, pp. 616-621
-
-
Means, J.A.1
Simson, C.M.2
Zhou, S.3
Rachford, A.A.4
Rack, J.5
Hines, J.V.6
-
29
-
-
33947412770
-
T box riboswitch antiterminator affinity modulated by tRNA structural elements
-
Means J.A., Wolf S., Agyeman A., Burton J.S., Simson C.M., Hines J.V. (2007) T box riboswitch antiterminator affinity modulated by tRNA structural elements. Chem Biol Drug Design;69:139-145.
-
(2007)
Chem Biol Drug Design
, vol.69
, pp. 139-145
-
-
Means, J.A.1
Wolf, S.2
Agyeman, A.3
Burton, J.S.4
Simson, C.M.5
Hines, J.V.6
-
32
-
-
80255140426
-
Anisotropy studies of tRNA - T box antiterminator RNA complex in the presence of 1,4-disubstituted 1,2,3-triazoles
-
Zhou S., Acquaah-Harrison G., Bergmeier S.C., Hines J.V. (2011) Anisotropy studies of tRNA - T box antiterminator RNA complex in the presence of 1, 4-disubstituted 1, 2, 3-triazoles. Bioorg Med Chem Lett;21:7059-7063.
-
(2011)
Bioorg Med Chem Lett
, vol.21
, pp. 7059-7063
-
-
Zhou, S.1
Acquaah-Harrison, G.2
Bergmeier, S.C.3
Hines, J.V.4
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