-
1
-
-
39149095636
-
SnapShot: Hematopoiesis
-
S.H. Orkin, and L.I. Zon SnapShot: hematopoiesis Cell 132 2008 712
-
(2008)
Cell
, vol.132
, pp. 712
-
-
Orkin, S.H.1
Zon, L.I.2
-
2
-
-
80051505603
-
Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network
-
J. Krumsiek, and C. Marr F.J. Theis Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network PLoS ONE 6 2011 e22649
-
(2011)
PLoS ONE
, vol.6
, pp. 22649
-
-
Krumsiek, J.1
Marr, C.2
Theis, F.J.3
-
3
-
-
0033587755
-
Negative cross-talk between hematopoietic regulators: GATA proteins repress PU.1
-
DOI 10.1073/pnas.96.15.8705
-
P. Zhang, and G. Behre Z. Sun Negative cross-talk between hematopoietic regulators: GATA proteins repress PU.1 Proc. Natl. Acad. Sci. USA 96 1999 8705 8710 (Pubitemid 29354855)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.15
, pp. 8705-8710
-
-
Zhang, P.1
Behre, G.2
Pan, J.3
Iwama, A.4
Wara-Aswapati, N.5
Radomska, H.S.6
Auron, P.E.7
Tenen, D.G.8
Sun, Z.9
-
4
-
-
34848883146
-
Reciprocal Activation of GATA-1 and PU.1 Marks Initial Specification of Hematopoietic Stem Cells into Myeloerythroid and Myelolymphoid Lineages
-
DOI 10.1016/j.stem.2007.07.004, PII S1934590907000707
-
Y. Arinobu, and S.-i. Mizuno K. Akashi Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages Cell Stem Cell 1 2007 416 427 (Pubitemid 47506533)
-
(2007)
Cell Stem Cell
, vol.1
, Issue.4
, pp. 416-427
-
-
Arinobu, Y.1
Mizuno, S.-i.2
Chong, Y.3
Shigematsu, H.4
Iino, T.5
Iwasaki, H.6
Graf, T.7
Mayfield, R.8
Chan, S.9
Kastner, P.10
Akashi, K.11
-
5
-
-
77954659725
-
The role of PU.1 and GATA-1 transcription factors during normal and leukemogenic hematopoiesis
-
P. Burda, P. Laslo, and T. Stopka The role of PU.1 and GATA-1 transcription factors during normal and leukemogenic hematopoiesis Leukemia 24 2010 1249 1257
-
(2010)
Leukemia
, vol.24
, pp. 1249-1257
-
-
Burda, P.1
Laslo, P.2
Stopka, T.3
-
7
-
-
0034696445
-
How to make a biological switch
-
DOI 10.1006/jtbi.2000.1068
-
J.L. Cherry, and F.R. Adler How to make a biological switch J. Theor. Biol. 203 2000 117 133 (Pubitemid 30662944)
-
(2000)
Journal of Theoretical Biology
, vol.203
, Issue.2
, pp. 117-133
-
-
Cherry, J.L.1
Adler, F.R.2
-
8
-
-
33746040437
-
Towards an understanding of lineage specification in hematopoietic stem cells: A mathematical model for the interaction of transcription factors GATA-1 and PU.1
-
DOI 10.1016/j.jtbi.2006.01.021, PII S0022519306000348
-
I. Roeder, and I. Glauche Towards an understanding of lineage specification in hematopoietic stem cells: a mathematical model for the interaction of transcription factors GATA-1 and PU.1 J. Theor. Biol. 241 2006 852 865 (Pubitemid 44080793)
-
(2006)
Journal of Theoretical Biology
, vol.241
, Issue.4
, pp. 852-865
-
-
Roeder, I.1
Glauche, I.2
-
9
-
-
34248199004
-
Bifurcation dynamics in lineage-commitment in bipotent progenitor cells
-
DOI 10.1016/j.ydbio.2007.02.036, PII S0012160607001674
-
S. Huang, and Y.-P. Guo T. Enver Bifurcation dynamics in lineage-commitment in bipotent progenitor cells Dev. Biol. 305 2007 695 713 (Pubitemid 46705410)
-
(2007)
Developmental Biology
, vol.305
, Issue.2
, pp. 695-713
-
-
Huang, S.1
Guo, Y.-P.2
May, G.3
Enver, T.4
-
10
-
-
59149091124
-
Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility
-
V. Chickarmane, T. Enver, and C. Peterson Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility PLOS Comput. Biol. 5 2009 e1000268
-
(2009)
PLOS Comput. Biol.
, vol.5
, pp. 1000268
-
-
Chickarmane, V.1
Enver, T.2
Peterson, C.3
-
11
-
-
84855695240
-
Mathematical modeling of stem cell differentiation: The PU.1-GATA-1 interaction
-
2011 Apr 2. [Epub ahead of print]
-
C. Duff, and K. Smith-Miles T. Tian Mathematical modeling of stem cell differentiation: the PU.1-GATA-1 interaction J. Math. Biol. 2011 2011 Apr 2. [Epub ahead of print]
-
(2011)
J. Math. Biol.
-
-
Duff, C.1
Smith-Miles, K.2
Tian, T.3
-
12
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
A. Eldar, and M.B. Elowitz Functional roles for noise in genetic circuits Nature 467 2010 167 173
-
(2010)
Nature
, vol.467
, pp. 167-173
-
-
Eldar, A.1
Elowitz, M.B.2
-
13
-
-
20344389483
-
Models of stochastic gene expression
-
DOI 10.1016/j.plrev.2005.03.003, PII S1571064505000138
-
J. Paulsson Models of stochastic gene expression Phys. Life Rev. 2 2005 157 175 (Pubitemid 40792434)
-
(2005)
Physics of Life Reviews
, vol.2
, Issue.2
, pp. 157-175
-
-
Paulsson, J.1
-
14
-
-
0035193294
-
Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
-
T.B. Kepler, and T.C. Elston Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations Biophys. J. 81 2001 3116 3136 (Pubitemid 33111463)
-
(2001)
Biophysical Journal
, vol.81
, Issue.6
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
15
-
-
2342464752
-
Enhancement of the stability of genetic switches by overlapping upstream regulatory domains
-
P.B. Warren, and P.R. ten Wolde Enhancement of the stability of genetic switches by overlapping upstream regulatory domains Phys. Rev. Lett. 92 2004 128101
-
(2004)
Phys. Rev. Lett.
, vol.92
, pp. 128101
-
-
Warren, P.B.1
Ten Wolde, P.R.2
-
18
-
-
33646397850
-
Genetic toggle switch without cooperative binding
-
A. Lipshtat, and A. Loinger O. Biham Genetic toggle switch without cooperative binding Phys. Rev. Lett. 96 2006 188101
-
(2006)
Phys. Rev. Lett.
, vol.96
, pp. 188101
-
-
Lipshtat, A.1
Loinger, A.2
Biham, O.3
-
19
-
-
21244447564
-
Self-consistent proteomic field theory of stochastic gene switches
-
DOI 10.1529/biophysj.104.050666
-
A.M. Walczak, M. Sasai, and P.G. Wolynes Self-consistent proteomic field theory of stochastic gene switches Biophys. J. 88 2005 828 850 (Pubitemid 40975922)
-
(2005)
Biophysical Journal
, vol.88
, Issue.2
, pp. 828-850
-
-
Walczak, A.M.1
Sasai, M.2
Wolynes, P.G.3
-
20
-
-
34547360659
-
Understanding stochastic simulations of the smallest genetic networks
-
D. Schultz, J.N. Onuchic, and P.G. Wolynes Understanding stochastic simulations of the smallest genetic networks J. Chem. Phys. 126 2007 245102
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 245102
-
-
Schultz, D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
22
-
-
55849110805
-
Calculation of switching times in the genetic toggle switch and other bistable systems
-
B. Barzel, and O. Biham Calculation of switching times in the genetic toggle switch and other bistable systems Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 78 2008 041919
-
(2008)
Phys. Rev. e Stat. Nonlin. Soft Matter Phys.
, vol.78
, pp. 041919
-
-
Barzel, B.1
Biham, O.2
-
24
-
-
34248147640
-
Studying genetic regulatory networks at the molecular level: Delayed reaction stochastic models
-
DOI 10.1016/j.jtbi.2007.01.021, PII S0022519307000513
-
R. Zhu, and A.S. Ribeiro S.A. Kauffman Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models J. Theor. Biol. 246 2007 725 745 (Pubitemid 46719259)
-
(2007)
Journal of Theoretical Biology
, vol.246
, Issue.4
, pp. 725-745
-
-
Zhu, R.1
Ribeiro, A.S.2
Salahub, D.3
Kauffman, S.A.4
-
26
-
-
56249130793
-
Analytical distributions for stochastic gene expression
-
V. Shahrezaei, and P.S. Swain Analytical distributions for stochastic gene expression Proc. Natl. Acad. Sci. USA 105 2008 17256 17261
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 17256-17261
-
-
Shahrezaei, V.1
Swain, P.S.2
-
28
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
DOI 10.1038/35002131
-
T.S. Gardner, C.R. Cantor, and J.J. Collins Construction of a genetic toggle switch in Escherichia coli Nature 403 2000 339 342 (Pubitemid 30062394)
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
29
-
-
79955488304
-
Dynamic analysis of stochastic transcription cycles
-
C.V. Harper, and B. Finkenstädt M.R. White Dynamic analysis of stochastic transcription cycles PLoS Biol. 9 2011 e1000607
-
(2011)
PLoS Biol.
, vol.9
, pp. 1000607
-
-
Harper, C.V.1
Finkenstädt, B.2
White, M.R.3
-
30
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
A. Raj, and C.S. Peskin S. Tyagi Stochastic mRNA synthesis in mammalian cells PLoS Biol. 4 2006 e309
-
(2006)
PLoS Biol.
, vol.4
, pp. 309
-
-
Raj, A.1
Peskin, C.S.2
Tyagi, S.3
-
31
-
-
49549141109
-
General mass-action kinetics. Positiveness of concentrations as structural property of Horn's equation
-
U. Müller-Herold General mass-action kinetics. Positiveness of concentrations as structural property of Horn's equation Chem. Phys. Lett. 33 1975 467 470
-
(1975)
Chem. Phys. Lett.
, vol.33
, pp. 467-470
-
-
Müller-Herold, U.1
-
33
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
DOI 10.1146/annurev.physchem.58.032806.104637
-
D.T. Gillespie Stochastic simulation of chemical kinetics Annu. Rev. Phys. Chem. 58 2007 35 55 (Pubitemid 46877584)
-
(2007)
Annual Review of Physical Chemistry
, vol.58
, pp. 35-55
-
-
Gillespie, D.T.1
-
34
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Y. Taniguchi, and P.J. Choi X.S. Xie Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells Science 329 2010 533 538
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Xie, X.S.3
-
36
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
D. Gillespie Exact stochastic simulation of coupled chemical reactions J. Phys. Chem. 81 1977 2340 2361
-
(1977)
J. Phys. Chem.
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.1
-
37
-
-
38949164415
-
Algorithms and software for stochastic simulation of biochemical reacting systems
-
DOI 10.1021/bp070255h
-
H. Li, and Y. Cao D.T. Gillespie Algorithms and software for stochastic simulation of biochemical reacting systems Biotechnol. Prog. 24 2008 56 61 (Pubitemid 351231250)
-
(2008)
Biotechnology Progress
, vol.24
, Issue.1
, pp. 56-61
-
-
Li, H.1
Cao, Y.2
Petzold, L.R.3
Gillespie, D.T.4
-
38
-
-
50449104011
-
Potential landscape and flux framework of nonequilibrium networks: Robustness, dissipation, and coherence of biochemical oscillations
-
J. Wang, L. Xu, and E. Wang Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations Proc. Natl. Acad. Sci. USA 105 2008 12271 12276
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 12271-12276
-
-
Wang, J.1
Xu, L.2
Wang, E.3
-
39
-
-
77952914558
-
The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation
-
J. Wang, and L. Xu S. Huang The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation Biophys. J. 99 2010 29 39
-
(2010)
Biophys. J.
, vol.99
, pp. 29-39
-
-
Wang, J.1
Xu, L.2
Huang, S.3
-
41
-
-
79958097395
-
Emergence of switch-like behavior in a large family of simple biochemical networks
-
D. Siegal-Gaskins, and M.K. Mejia-Guerra E. Grotewold Emergence of switch-like behavior in a large family of simple biochemical networks PLOS Comput. Biol. 7 2011 e1002039
-
(2011)
PLOS Comput. Biol.
, vol.7
, pp. 1002039
-
-
Siegal-Gaskins, D.1
Mejia-Guerra, M.K.2
Grotewold, E.3
-
42
-
-
54949110207
-
Heterogeneity of embryonic and adult stem cells
-
T. Graf, and M. Stadtfeld Heterogeneity of embryonic and adult stem cells Cell Stem Cell 3 2008 480 483
-
(2008)
Cell Stem Cell
, vol.3
, pp. 480-483
-
-
Graf, T.1
Stadtfeld, M.2
-
43
-
-
0037103312
-
Deterministic regulation of hematopoietic stem cell self-renewal and differentiation
-
C.E. Müller-Sieburg, and R.H. Cho H.B. Sieburg Deterministic regulation of hematopoietic stem cell self-renewal and differentiation Blood 100 2002 1302 1309 (Pubitemid 34864285)
-
(2002)
Blood
, vol.100
, Issue.4
, pp. 1302-1309
-
-
Muller-Sieburg, C.E.1
Cho, R.H.2
Thoman, M.3
Adkins, B.4
Sieburg, H.B.5
-
44
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
DOI 10.1038/nature06965, PII NATURE06965
-
H.H. Chang, and M. Hemberg S. Huang Transcriptome-wide noise controls lineage choice in mammalian progenitor cells Nature 453 2008 544 547 (Pubitemid 351733323)
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
45
-
-
17444408518
-
Chemical models of genetic toggle switches
-
DOI 10.1021/jp045523y
-
P.B. Warren, and P.R. ten Wolde Chemical models of genetic toggle switches J. Phys. Chem. B 109 2005 6812 6823 (Pubitemid 40538450)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.14
, pp. 6812-6823
-
-
Warren, P.B.1
Ten Wolde, P.R.2
-
46
-
-
0037438387
-
Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis
-
K. Akashi, and X. He L. Li Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis Blood 101 2003 383 389
-
(2003)
Blood
, vol.101
, pp. 383-389
-
-
Akashi, K.1
He, X.2
Li, L.3
-
47
-
-
77955502318
-
Modeling reveals bistability and low-pass filtering in the network module determining blood stem cell fate
-
J. Narula, and A.M. Smith O.A. Igoshin Modeling reveals bistability and low-pass filtering in the network module determining blood stem cell fate PLOS Comput. Biol. 6 2010 e1000771
-
(2010)
PLOS Comput. Biol.
, vol.6
, pp. 1000771
-
-
Narula, J.1
Smith, A.M.2
Igoshin, O.A.3
-
48
-
-
67650418221
-
Hematopoietic cytokines can instruct lineage choice
-
M.A. Rieger, and P.S. Hoppe T. Schroeder Hematopoietic cytokines can instruct lineage choice Science 325 2009 217 218
-
(2009)
Science
, vol.325
, pp. 217-218
-
-
Rieger, M.A.1
Hoppe, P.S.2
Schroeder, T.3
-
49
-
-
0037099497
-
Transcription factor-mediated lineage switching reveals plasticity in primary committed progenitor cells
-
DOI 10.1093/emboj/cdf368
-
C. Heyworth, and S. Pearson T. Enver Transcription factor-mediated lineage switching reveals plasticity in primary committed progenitor cells EMBO J. 21 2002 3770 3781 (Pubitemid 34787050)
-
(2002)
EMBO Journal
, vol.21
, Issue.14
, pp. 3770-3781
-
-
Heyworth, C.1
Pearson, S.2
May, G.3
Enver, T.4
-
50
-
-
54249117585
-
Adaptive response of a gene network to environmental changes by fitness-induced attractor selection
-
A. Kashiwagi, and I. Urabe T. Yomo Adaptive response of a gene network to environmental changes by fitness-induced attractor selection PLoS ONE 1 2006 e49
-
(2006)
PLoS ONE
, vol.1
, pp. 49
-
-
Kashiwagi, A.1
Urabe, I.2
Yomo, T.3
-
51
-
-
43649100468
-
Reaction coordinates for the flipping of genetic switches
-
M.J. Morelli, and S. Tanase-Nicola P.R. ten Wolde Reaction coordinates for the flipping of genetic switches Biophys. J. 94 2008 3413 3423
-
(2008)
Biophys. J.
, vol.94
, pp. 3413-3423
-
-
Morelli, M.J.1
Tanase-Nicola, S.2
Ten Wolde, P.R.3
|