메뉴 건너뛰기




Volumn 62, Issue 2, 2012, Pages 376-383

Polynucleobacter difficilis sp. nov., a planktonic freshwater bacterium affiliated with subcluster B1 of the genus Polynucleobacter

Author keywords

[No Author keywords available]

Indexed keywords

CATALASE; FATTY ACID; OXIDOREDUCTASE; RNA 16S; SODIUM CHLORIDE;

EID: 84855196459     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.031393-0     Document Type: Article
Times cited : (24)

References (36)
  • 1
    • 63849206547 scopus 로고    scopus 로고
    • Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon
    • Alonso, C., Zeder, M., Piccini, C., Conde, D. & Pernthaler, J. (2009). Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon. Environ Microbiol 11, 867-876.
    • (2009) Environ Microbiol , vol.11 , pp. 867-876
    • Alonso, C.1    Zeder, M.2    Piccini, C.3    Conde, D.4    Pernthaler, J.5
  • 2
    • 0242657623 scopus 로고    scopus 로고
    • Members of a readily enriched beta-proteo-bacterial clade are common in surface waters of a humic lake
    • Burkert, U., Warnecke, F., Babenzien, D., Zwirnmann, E. & Pernthaler, J. (2003). Members of a readily enriched beta-proteo-bacterial clade are common in surface waters of a humic lake. Appl Environ Microbiol 69, 6550-6559.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6550-6559
    • Burkert, U.1    Warnecke, F.2    Babenzien, D.3    Zwirnmann, E.4    Pernthaler, J.5
  • 3
    • 0017758250 scopus 로고
    • A rapid method for the base ratio determination of bacterial DNA
    • Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
    • (1977) Anal Biochem , vol.81 , pp. 461-466
    • Cashion, P.1    Holder-Franklin, M.A.2    McCully, J.3    Franklin, M.4
  • 4
    • 35648991375 scopus 로고    scopus 로고
    • EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
    • Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2259-2261
    • Chun, J.1    Lee, J.-H.2    Jung, Y.3    Kim, M.4    Kim, S.5    Kim, B.K.6    Lim, Y.W.7
  • 6
    • 28044457197 scopus 로고    scopus 로고
    • Synchrony and seasonality in bacterioplankton communities of two temperate rivers
    • Crump, B. C. & Hobbie, J. E. (2005). Synchrony and seasonality in bacterioplankton communities of two temperate rivers. Limnol Oceanogr 50, 1718-1729.
    • (2005) Limnol Oceanogr , vol.50 , pp. 1718-1729
    • Crump, B.C.1    Hobbie, J.E.2
  • 7
    • 0014713693 scopus 로고
    • The quantitative measurement of DNA hybridization from renaturation rates
    • De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
    • (1970) Eur J Biochem , vol.12 , pp. 133-142
    • de Ley, J.1    Cattoir, H.2    Reynaerts, A.3
  • 8
    • 0141816854 scopus 로고    scopus 로고
    • Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones
    • Hahn, M. W. (2003). Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones. Appl Environ Microbiol 69, 5248-5254.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5248-5254
    • Hahn, M.W.1
  • 9
    • 4544276426 scopus 로고    scopus 로고
    • Broad diversity of viable bacteria in 'sterile' (0.2 micron) filtered water
    • Hahn, M. W. (2004). Broad diversity of viable bacteria in 'sterile' (0.2 micron) filtered water. Res Microbiol 155, 688-691.
    • (2004) Res Microbiol , vol.155 , pp. 688-691
    • Hahn, M.W.1
  • 10
    • 2342608928 scopus 로고    scopus 로고
    • The filtration-acclimatization method for isolation of an important fraction of the not readily cultivable bacteria
    • Hahn, M. W., Stadler, P., Wu, Q. L. & Pöckl, M. (2004). The filtration-acclimatization method for isolation of an important fraction of the not readily cultivable bacteria. J Microbiol Methods 57, 379-390.
    • (2004) J Microbiol Methods , vol.57 , pp. 379-390
    • Hahn, M.W.1    Stadler, P.2    Wu, Q.L.3    Pöckl, M.4
  • 11
    • 23744486525 scopus 로고    scopus 로고
    • Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacter-ioplankton of a freshwater pond
    • Hahn, M. W., Pöckl, M. & Wu, Q. L. (2005). Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacter-ioplankton of a freshwater pond. Appl Environ Microbiol 71, 4539-4547.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4539-4547
    • Hahn, M.W.1    Pöckl, M.2    Wu, Q.L.3
  • 12
    • 70349329727 scopus 로고    scopus 로고
    • Emended description of the genus Polynucleobacter and the species Polynucleobacter necessarius and proposal of two subspecies, P. necessarius subsp. necessarius subsp. nov. and P. necessarius subsp. asymbioticus subsp. nov
    • Hahn, M. W., Lang, E., Brandt, U., Wu, Q. L. & Scheuerl, T. (2009). Emended description of the genus Polynucleobacter and the species Polynucleobacter necessarius and proposal of two subspecies, P. necessarius subsp. necessarius subsp. nov. and P. necessarius subsp. asymbioticus subsp. nov. Int J Syst Evol Microbiol 59, 2002-2009.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 2002-2009
    • Hahn, M.W.1    Lang, E.2    Brandt, U.3    Wu, Q.L.4    Scheuerl, T.5
  • 13
    • 76849114725 scopus 로고    scopus 로고
    • Polynucleobacter cosmopolitanus sp. nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers
    • Hahn, M. W., Lang, E., Brandt, U., Lünsdorf, H., Wu, Q. L. & Stackebrandt, E. (2010). Polynucleobacter cosmopolitanus sp. nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers. Int J Syst Evol Microbiol 60, 166-173.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 166-173
    • Hahn, M.W.1    Lang, E.2    Brandt, U.3    Lünsdorf, H.4    Wu, Q.L.5    Stackebrandt, E.6
  • 14
    • 79952431875 scopus 로고    scopus 로고
    • Polynucleobacter rarus sp. nov., a free-living planktonic bacterium isolated from an acidic lake
    • Hahn, M. W., Lang, E., Tarao, M. & Brandt, U. (2011a). Polynucleobacter rarus sp. nov., a free-living planktonic bacterium isolated from an acidic lake. Int J Syst Evol Microbiol 61, 781-787.
    • (2011) Int J Syst Evol Microbiol , vol.61 , pp. 781-787
    • Hahn, M.W.1    Lang, E.2    Tarao, M.3    Brandt, U.4
  • 15
    • 79952368533 scopus 로고    scopus 로고
    • Polynucleobacter acidiphobus sp. nov., a representative of an abundant group of planktonic freshwater bacteria
    • Hahn, M. W., Lang, E., Brandt, U. & Spröer, C. (2011b). Polynucleobacter acidiphobus sp. nov., a representative of an abundant group of planktonic freshwater bacteria. Int J Syst Evol Microbiol 61, 788-794.
    • (2011) Int J Syst Evol Microbiol , vol.61 , pp. 788-794
    • Hahn, M.W.1    Lang, E.2    Brandt, U.3    Spröer, C.4
  • 16
    • 0000495106 scopus 로고
    • Polynucleobacter necessarius gen. nov., sp. nov., an obligately endosymbiotic bacterium living in the cytoplasm of Euplotes
    • Heckmann, K. & Schmidt, H. J. (1987). Polynucleobacter necessarius gen. nov., sp. nov., an obligately endosymbiotic bacterium living in the cytoplasm of Euplotes. Int J Syst Bacteriol 37, 456-457.
    • (1987) Int J Syst Bacteriol , vol.37 , pp. 456-457
    • Heckmann, K.1    Schmidt, H.J.2
  • 17
    • 0030872627 scopus 로고    scopus 로고
    • Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences
    • Hiorns, W. D., Methé, B. A., Nierzwicki-Bauer, S. A. & Zehr, J. P. (1997). Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences. Appl Environ Microbiol 63, 2957-2960.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2957-2960
    • Hiorns, W.D.1    Methé, B.A.2    Nierzwicki-Bauer, S.A.3    Zehr, J.P.4
  • 18
    • 0037742699 scopus 로고    scopus 로고
    • Bacterial diversity patterns along a gradient of primary productivity
    • Horner-Devine, M. C., Leibold, M. A., Smith, V. & Bohannan, B. J. M. (2003). Bacterial diversity patterns along a gradient of primary productivity. Ecol Lett 6, 613-622.
    • (2003) Ecol Lett , vol.6 , pp. 613-622
    • Horner-Devine, M.C.1    Leibold, M.A.2    Smith, V.3    Bohannan, B.J.M.4
  • 19
    • 2142729591 scopus 로고
    • Erevan: Armenia National Academy of Science (in Russian, with extended summaries in English and Armenian)
    • Hovhannissian, R. H., Oganessian, R.O. (1994). Lake Sevan, yesterday, today. Erevan: Armenia National Academy of Science (in Russian, with extended summaries in English and Armenian).
    • (1994) Lake Sevan, Yesterday, Today
    • Hovhannissian, R.H.1    Oganessian, R.O.2
  • 20
    • 0020549589 scopus 로고
    • Studies on the spectrophotometric determination of DNA hybridization from renaturation rates
    • Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
    • (1983) Syst Appl Microbiol , vol.4 , pp. 184-192
    • Huß, V.A.R.1    Festl, H.2    Schleifer, K.H.3
  • 21
    • 0029799185 scopus 로고    scopus 로고
    • Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa
    • Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
    • (1996) Can J Microbiol , vol.42 , pp. 989-1005
    • Kämpfer, P.1    Kroppenstedt, R.M.2
  • 23
    • 52949126446 scopus 로고    scopus 로고
    • Spatio-temporal niche separation of planktonic Betaproteo-bacteria in an oligo-mesotrophic lake
    • Salcher, M. M., Pernthaler, J., Zeder, M., Psenner, R. & Posch, T. (2008). Spatio-temporal niche separation of planktonic Betaproteo-bacteria in an oligo-mesotrophic lake. Environ Microbiol 10, 2074-2086.
    • (2008) Environ Microbiol , vol.10 , pp. 2074-2086
    • Salcher, M.M.1    Pernthaler, J.2    Zeder, M.3    Psenner, R.4    Posch, T.5
  • 25
    • 13944250731 scopus 로고    scopus 로고
    • Detection of abundant bacteria in the Weser estuary using culture-dependent and culture independent approaches
    • Selje, N., Brinkhoff, T. & Simon, M. (2005). Detection of abundant bacteria in the Weser estuary using culture-dependent and culture independent approaches. Aquat Microb Ecol 39, 17-34.
    • (2005) Aquat Microb Ecol , vol.39 , pp. 17-34
    • Selje, N.1    Brinkhoff, T.2    Simon, M.3
  • 27
    • 0030061074 scopus 로고    scopus 로고
    • Polynucleobacter necessarius, an obligate bacterial endosym-biont of the hypotrichous ciliate Euplotes aediculatus, is a member of the beta-subclass of Proteobacteria
    • Springer, N., Amann, R., Ludwig, W., Schleifer, K. H. & Schmidt, H. (1996). Polynucleobacter necessarius, an obligate bacterial endosym-biont of the hypotrichous ciliate Euplotes aediculatus, is a member of the beta-subclass of Proteobacteria. FEMS Microbiol Lett 135, 333-336.
    • (1996) FEMS Microbiol Lett , vol.135 , pp. 333-336
    • Springer, N.1    Amann, R.2    Ludwig, W.3    Schleifer, K.H.4    Schmidt, H.5
  • 28
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 29
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 30
    • 33846127088 scopus 로고    scopus 로고
    • Endosymbiosis in statu nascendi: Close phylogenetic relationship between obligately endosymbiotic and obligately free-living Polynu-cleobacter strains (Betaproteobacteria)
    • Vannini, C., Pöckl, M., Petroni, G., Wu, Q. L., Lang, E., Stackebrandt, E., Schrallhammer, M., Richardson, P. M. & Hahn, M. W. (2007). Endosymbiosis in statu nascendi: close phylogenetic relationship between obligately endosymbiotic and obligately free-living Polynu-cleobacter strains (Betaproteobacteria). Environ Microbiol 9, 347-359.
    • (2007) Environ Microbiol , vol.9 , pp. 347-359
    • Vannini, C.1    Pöckl, M.2    Petroni, G.3    Wu, Q.L.4    Lang, E.5    Stackebrandt, E.6    Schrallhammer, M.7    Richardson, P.M.8    Hahn, M.W.9
  • 31
    • 57449092687 scopus 로고    scopus 로고
    • Effective isolation of bacterioplankton genus Polynucleobacter from freshwater environments grown on photochemically degraded dissolved organic matter
    • Watanabe, K., Komatsu, N., Ishii, Y. & Negishi, M. (2009). Effective isolation of bacterioplankton genus Polynucleobacter from freshwater environments grown on photochemically degraded dissolved organic matter. FEMS Microbiol Ecol 67, 57-68.
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 57-68
    • Watanabe, K.1    Komatsu, N.2    Ishii, Y.3    Negishi, M.4
  • 33
    • 33745050646 scopus 로고    scopus 로고
    • Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels
    • Wu, Q. L. & Hahn, M. W. (2006). Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels. FEMS Microbiol Ecol 57, 67-79.
    • (2006) FEMS Microbiol Ecol , vol.57 , pp. 67-79
    • Wu, Q.L.1    Hahn, M.W.2
  • 34
    • 33746689880 scopus 로고    scopus 로고
    • High predictability of the seasonal dynamics of a species-like Polynucleobacter population in a freshwater lake
    • Wu, Q. L. & Hahn, M. W. (2006). High predictability of the seasonal dynamics of a species-like Polynucleobacter population in a freshwater lake. Environ Microbiol 8, 1660-1666.
    • (2006) Environ Microbiol , vol.8 , pp. 1660-1666
    • Wu, Q.L.1    Hahn, M.W.2
  • 35
    • 33747359120 scopus 로고    scopus 로고
    • Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China
    • Wu, Q. L., Zwart, G., Schauer, M., Kamst-van Agterveld, M. P. & Hahn, M. W. (2006). Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China. Appl Environ Microbiol 72, 5478-5485.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5478-5485
    • Wu, Q.L.1    Zwart, G.2    Schauer, M.3    Kamst-van Agterveld, M.P.4    Hahn, M.W.5
  • 36
    • 0037178021 scopus 로고    scopus 로고
    • Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
    • Zwart, G., Crump, B. C., Kamst-Van Agterveld, M. P., Hagen, F. & Han, S.-K. (2002). Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28, 141-155.
    • (2002) Aquat Microb Ecol , vol.28 , pp. 141-155
    • Zwart, G.1    Crump, B.C.2    Kamst-van Agterveld, M.P.3    Hagen, F.4    Han, S.-K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.