Discovery of a linear cyclotide from the bracelet subfamily and its disulfide mapping by top-down mass spectrometry

Journal of Biological Chemistry

Volumn 286, Issue 52, 2011, Pages 44833-44844

  Nguyen, Giang Kien Truc ^a   Zhang, Sen ^a   Wang, Wei ^a   Wong, Clarence Tsun Ting ^a   Nguyen, Ngan Thi Kim ^a   Tam, James P ^a  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

ANTENNAS; CLONE CELLS; COVALENT BONDS; ESCHERICHIA COLI; GENE ENCODING; MAPPING; MASS SPECTROMETRY;

BACTERIAL STRAINS; BIOPHYSICAL CHARACTERIZATION; DISULFIDE BONDS; DISULFIDE LINKAGES; DISULFIDE MAPPING; MICROMOLAR CONCENTRATION; PROLINE RESIDUES; TOP-DOWN MASS SPECTROMETRIES;

SULFUR COMPOUNDS;

ASPARAGINE; CYCLOTIDE; CYSTEINE; CYSTINE; DISULFIDE; EXOPEPTIDASE; HEDYOTIDE B1; HEDYOTIDE B2; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERICIDAL ACTIVITY; BIOPHYSICS; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DISULFIDE BOND; ESCHERICHIA COLI; HEDYOTIS; HEDYOTIS BIFLORA; MASS SPECTROMETRY; MOLECULAR CLONING; NONHUMAN; NONSENSE MUTATION; NUCLEOTIDE SEQUENCE; PEPTIDE MAPPING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN STRUCTURE; PROTEIN UNFOLDING; STOP CODON; STREPTOCOCCUS SALIVARIUS;

EID: 84455161648     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.290296     Document Type: Article

References (41)

1. Craik, D. J., Daly, N. L., Bond, T., and Waine, C. (1999) J. Mol. Biol. 294, 1327-1336
2. Sze, S. K., Wang, W., Meng, W., Yuan, R., Guo, T., Zhu, Y., and Tam, J. P. (2009) Anal. Chem. 81, 1079-1088
3. Colgrave, M. L., and Craik, D. J. (2004) Biochemistry 43, 5965-5975
4. Henriques, S. T., and Craik, D. J. (2010) Drug Discov. Today 15, 57-64
5. Gran, L. (1973) J. Nat. Prod. (Lloydia) 36, 207-208
6. Saether, O., Craik, D. J., Campbell, I. D., Sletten, K., Juul, J., and Norman, D. G. (1995) Biochemistry 34, 4147-4158
7. Tam, J. P., Lu, Y. A., Yang, J. L., and Chiu, K. W. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 8913-8918
8. Gruber, C. W., Elliott, A. G., Ireland, D. C., Delprete, P. G., Dessein, S., Göransson, U., Trabi, M., Wang, C. K., Kinghorn, A. B., Robbrecht, E., and Craik, D. J. (2008) Plant Cell 20, 2471-2483
9. Trabi, M., Svangård, E., Herrmann, A., Göransson, U., Claeson, P., Craik, D. J., and Bohlin, L. (2004) J. Nat. Prod. 67, 806-810
10. Hernandez, J. F., Gagnon, J., Chiche, L., Nguyen, T. M., Andrieu, J. P., Heitz, A., Trinh Hong, T., Pham, T. T., and Le Nguyen, D. (2000) Biochemistry 39, 5722-5730
11. Nguyen, G. K., Zhang, S., Nguyen, N. T., Nguyen, P. Q., Chiu, M. S., Hardjojo, A., and Tam, J. P. (2011) J. Biol. Chem. 286, 24275-24287
12. Poth, A. G., Colgrave, M. L., Philip, R., Kerenga, B., Daly, N. L., Anderson, M. A., and Craik, D. J. (2011) ACS Chem. Biol. 6, 345-355
13. Gustafson, K. R., McKee, T. C., and Bokesch, H. R. (2004) Curr. Protein Pept. Sci. 5, 331-340
14. Göransson, U., Luijendijk, T., Johansson, S., Bohlin, L., and Claeson, P. (1999) J. Nat. Prod. 62, 283-286
15. Gran, L., Sandberg, F., and Sletten, K. (2000) J. Ethnopharmacol. 70, 197-203
16. Jennings, C., West, J., Waine, C., Craik, D., and Anderson, M. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 10614-10619
17. Colgrave, M. L., Kotze, A. C., Huang, Y. H., O'Grady, J., Simonsen, S. M., and Craik, D. J. (2008) Biochemistry 47, 5581-5589
18. Craik, D. J., Cemazar, M., Wang, C. K., and Daly, N. L. (2006) Biopolymers 84, 250-266
19. Wang, C. K., Kaas, Q., Chiche, L., and Craik, D. J. (2008) Nucleic Acids Res. 36, D206-D210
20. Simonsen, S. M., Sando, L., Ireland, D. C., Colgrave, M. L., Bharathi, R., Göransson, U., and Craik, D. J. (2005) Plant Cell 17, 3176-3189
21. Ireland, D. C., Colgrave, M. L., Nguyencong, P., Daly, N. L., and Craik, D. J. (2006) J. Mol. Biol. 357, 1522-1535
22. Gerlach, S. L., Burman, R., Bohlin, L., Mondal, D., and Göransson, U. (2010) J. Nat. Prod. 73, 1207-1213
23. Plan, M. R., Göransson, U., Clark, R. J., Daly, N. L., Colgrave, M. L., and Craik, D. J. (2007) Chembiochem. 8, 1001-1011
24. Barry, D. G., Daly, N. L., Clark, R. J., Sando, L., and Craik, D. J. (2003) Biochemistry 42, 6688-6695
25. Saska, I., Gillon, A. D., Hatsugai, N., Dietzgen, R. G., Hara-Nishimura, I., Anderson, M. A., and Craik, D. J. (2007) J. Biol. Chem. 282, 29721-29728
26. Dagar, H. S., and Dagar, J. C. (1991) Econ. Bot. 45, 114-119
27. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
28. Page, R. D. (1996) Comput. Appl. Biosci. 12, 357-358
29. Lehrer, R. I., Rosenman, M., Harwig, S. S., Jackson, R., and Eisenhauer, P. (1991) J. Immunol. Methods 137, 167-173
30. Tam, J. P., Lu, Y. A., and Yang, J. L. (2002) Eur. J. Biochem. 269, 923-932
31. Fiser, A., and Sali, A. (2003) Methods Enzymol. 374, 461-491
32. Daly, N. L., Koltay, A., Gustafson, K. R., Boyd, M. R., Casas-Finet, J. R., and Craik, D. J. (1999) J. Mol. Biol. 285, 333-345
33. Kårehed, J., Groeninckx, I., Dessein, S., Motley, T. J., and Bremer, B. (2008) Mol. Phylogenet. Evol. 49, 843-866
34. Reid, G. E., and McLuckey, S. A. (2002) J. Mass Spectrom. 37, 663-675
35. Göransson, U., and Craik, D. J. (2003) J. Biol. Chem. 278, 48188-48196
36. Datta, P. C., and Sen, A. (1969) Q. J. Crude Drug Res. 9, 1356-1374
37. Kelleher, N. L., Lin, H. Y., Valaskovic, G. A., Aaserud, D. J., Fridriksson, E. K., and McLafferty, F. W. (1999) J. Am. Chem. Soc. 121, 806-812
38. Gillon, A. D., Saska, I., Jennings, C. V., Guarino, R. F., Craik, D. J., and Anderson, M. A. (2008) Plant J. 53, 505-515
39. Gupta, M. K., Shrivastava, P., and Singhal, P. K. (1996) Hydrobiologia 335, 33-41
40. Wong, C. T., Taichi, M., Nishio, H., Nishiuchi, Y., and Tam, J. P. (2011) Biochemistry 50, 7275-7283
41. Emanuelsson, O., Brunak, S., von Heijne, G., and Nielsen, H. (2007) Nat. Protoc. 2, 953-971