-
1
-
-
0029037739
-
Protein molecules as computational elements in living cells
-
Bray, D. (1995) Protein molecules as computational elements in living cells. Nature 376, 307-312
-
(1995)
Nature
, vol.376
, pp. 307-312
-
-
Bray, D.1
-
2
-
-
77953896432
-
Cell signaling by receptor tyrosine kinases
-
Lemmon, M. A. and Schlessinger, J. (2010) Cell signaling by receptor tyrosine kinases. Cell 141, 1117-1134
-
(2010)
Cell
, vol.141
, pp. 1117-1134
-
-
Lemmon, M.A.1
Schlessinger, J.2
-
3
-
-
0842346438
-
Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems
-
Pawson, T. (2004) Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems. Cell 116, 191-203
-
(2004)
Cell
, vol.116
, pp. 191-203
-
-
Pawson, T.1
-
4
-
-
0028872649
-
Specificity of receptor tyrosine kinase signaling: Transient versus sustained extracellular signal-related kinase activation
-
Marshall, C. J. (1995) Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-related kinase activation. Cell 80, 179-185
-
(1995)
Cell
, vol.80
, pp. 179-185
-
-
Marshall, C.J.1
-
5
-
-
33746882837
-
A theoretical framework for specificity in cell signaling
-
Komarova, N. L., Zou, X. F., Nie, Q. and Bardwell, L. (2005) A theoretical framework for specificity in cell signaling. Mol. Syst. Biol. 1, 2005.0023
-
(2005)
Mol. Syst. Biol.
, vol.1
-
-
Komarova, N.L.1
Zou, X.F.2
Nie, Q.3
Bardwell, L.4
-
6
-
-
36048944020
-
Kinetic insulation as an effective mechanism for achieving pathway specificity in intracellular signaling networks
-
DOI 10.1073/pnas.0703894104
-
Behar, M., Dohlman, H. G. and Elston, T. C. (2007) Kinetic insulation as an effective mechanism for achieving pathway specificity in intracellular signaling networks. Proc. Natl. Acad. Sci. U.S.A. 104, 16146-16151 (Pubitemid 350099376)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.41
, pp. 16146-16151
-
-
Behar, M.1
Dohlman, H.G.2
Elston, T.C.3
-
7
-
-
0026674617
-
Receptor specificity of growth factor-stimulated synthesis of 3-phosphorylated inositol lipids in Swiss 3T3 cells
-
Jackson, T. R., Stephens, L. R. and Hawkins, P. T. (1992) Receptor specificity of growth factor-stimulated synthesis of 3-phosphorylated inositol lipids in Swiss 3T3 cells. J. Biol. Chem. 267, 16627-16636
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 16627-16636
-
-
Jackson, T.R.1
Stephens, L.R.2
Hawkins, P.T.3
-
8
-
-
0027398961
-
Epidermal-growth-factor receptors generate Ras - GTP more efficiently than insulin receptors
-
Osterop, A. P., Medema, R. H., van der Zon, G. C., Bos, J. L., Möller, W. and Maassen, J. A. (1993) Epidermal-growth-factor-receptors generate Ras-GTP more efficiently than insulin receptors. Eur. J. Biochem. 212, 477-482 (Pubitemid 23076116)
-
(1993)
European Journal of Biochemistry
, vol.212
, Issue.2
, pp. 477-482
-
-
Osterop, A.P.R.M.1
Medema, R.H.2
Zon, V.D.G.C.M.3
Bos, J.L.4
Moller, W.5
Maassen, J.A.6
-
9
-
-
0028874343
-
Divergent mechanisms for homologous desensitization of p21ras by insulin and growth factors
-
Klarlund, J. K., Cherniak, A. D. and Czech, M. P. (1995) Divergent mechanisms for homologous desensitization of p21ras by insulin and growth factors. J. Biol. Chem. 270, 23421-23428
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 23421-23428
-
-
Klarlund, J.K.1
Cherniak, A.D.2
Czech, M.P.3
-
10
-
-
28844441230
-
Cell signaling: A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis
-
DOI 10.1126/science.1116598
-
Janes, K. A., Albeck, J. G., Gaudet, S., Sorger, P. K., Lauffenburger, D. A. and Yaffe, M. B. (2005) A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis. Science 310, 1646-1653 (Pubitemid 41780781)
-
(2005)
Science
, vol.310
, Issue.5754
, pp. 1646-1653
-
-
Janes, K.A.1
Albeck, J.G.2
Gaudet, S.3
Sorger, P.K.4
Lauffenburger, D.A.5
Yaffe, M.B.6
-
11
-
-
58549083142
-
Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data
-
Chen, W. W., Schoeberl, B., Jasper, P. J., Niepel, M., Nielsen, U. B., Lauffenburger, D. A. and Sorger, P. K. (2009) Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data. Mol. Syst. Biol. 5, 239
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 239
-
-
Chen, W.W.1
Schoeberl, B.2
Jasper, P.J.3
Niepel, M.4
Nielsen, U.B.5
Lauffenburger, D.A.6
Sorger, P.K.7
-
12
-
-
64349110975
-
Systems-level interactions between insulin-EGF networks amplify mitogenic signaling
-
Borisov, N., Aksamitiene, E., Kiyatkin, A., Legewie, S., Berkhout, J., Maiwald, T., Kaimachnikov, N. P., Timmer, J., Hoek, J. B. and Kholodenko, B. N. (2009) Systems-level interactions between insulin-EGF networks amplify mitogenic signaling. Mol. Syst. Biol. 5, 256
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 256
-
-
Borisov, N.1
Aksamitiene, E.2
Kiyatkin, A.3
Legewie, S.4
Berkhout, J.5
Maiwald, T.6
Kaimachnikov, N.P.7
Timmer, J.8
Hoek, J.B.9
Kholodenko, B.N.10
-
13
-
-
69849115198
-
Therapeutically targeting ErbB3: A key node in ligand-induced activation of the ErbB receptor-PI3K axis
-
Schoeberl, B., Pace, E. A., Fitzgerald, J. B., Harms, B. D., Xu, L., Nie, L., Linggi, B., Kalra, A., Paragas, V., Bukhalid, R. et al. (2009) Therapeutically targeting ErbB3: a key node in ligand-induced activation of the ErbB receptor-PI3K axis. Sci. Signaling 2, ra31
-
(2009)
Sci. Signaling
, vol.2
-
-
Schoeberl, B.1
Pace, E.A.2
Fitzgerald, J.B.3
Harms, B.D.4
Xu, L.5
Nie, L.6
Linggi, B.7
Kalra, A.8
Paragas, V.9
Bukhalid, R.10
-
14
-
-
77952902183
-
Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics
-
Nakakuki, T., Birtwistle, M. R., Saeki, Y., Yumoto, N., Ide, K., Nagashima, T., Brusch, L., Ogunnaike, B. A., Okada-Hatakeyama, M. and Kholodenko, B. N. (2010) Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics. Cell 141, 884-896
-
(2010)
Cell
, vol.141
, pp. 884-896
-
-
Nakakuki, T.1
Birtwistle, M.R.2
Saeki, Y.3
Yumoto, N.4
Ide, K.5
Nagashima, T.6
Brusch, L.7
Ogunnaike, B.A.8
Okada-Hatakeyama, M.9
Kholodenko, B.N.10
-
15
-
-
66149156514
-
Why we need quantitative dynamic models
-
Iyengar, R. (2009) Why we need quantitative dynamic models. Sci. Signaling 2, eg3
-
(2009)
Sci. Signaling
, vol.2
-
-
Iyengar, R.1
-
16
-
-
74049122828
-
Cancer systems biology: A network modeling perspective
-
Kreeger, P. K. and Lauffenburger, D. A. (2010) Cancer systems biology: a network modeling perspective. Carcinogenesis 31, 2-8
-
(2010)
Carcinogenesis
, vol.31
, pp. 2-8
-
-
Kreeger, P.K.1
Lauffenburger, D.A.2
-
17
-
-
34248563290
-
The ERK1/2 mitogen-activated protein kinase pathway as a master regulator of the G1- to S-phase transition
-
DOI 10.1038/sj.onc.1210414, PII 1210414
-
Meloche, S. and Pouysségur, J. (2007) The ERK1/2 mitogen-activated protein kinase pathway as a master regulator of the G1- to S-phase transition. Oncogene 26, 3227-3239 (Pubitemid 46763017)
-
(2007)
Oncogene
, vol.26
, Issue.22
, pp. 3227-3239
-
-
Meloche, S.1
Pouyssegur, J.2
-
18
-
-
34248591612
-
Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer
-
DOI 10.1038/sj.onc.1210422, PII 1210422
-
Roberts, P. J. and Der, C. J. (2007) Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer. Oncogene 26, 3291-3310 (Pubitemid 46763022)
-
(2007)
Oncogene
, vol.26
, Issue.22
, pp. 3291-3310
-
-
Roberts, P.J.1
Der, C.J.2
-
19
-
-
60749087137
-
PI3K-dependent crosstalk interactions converge with Ras as quantifiable inputs integrated by Erk
-
Wang, C.-C., Cirit, M. and Haugh, J. M. (2009) PI3K-dependent crosstalk interactions converge with Ras as quantifiable inputs integrated by Erk. Mol. Syst. Biol. 5, 246
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 246
-
-
Wang, C.-C.1
Cirit, M.2
Haugh, J.M.3
-
20
-
-
78449248996
-
Systematic quantification of negative feedback mechanisms in the extracellular signal-regulated kinase (ERK) signaling network
-
Cirit, M., Wang, C.-C. and Haugh, J. M. (2010) Systematic quantification of negative feedback mechanisms in the extracellular signal-regulated kinase (ERK) signaling network. J. Biol. Chem. 285, 36736-36744
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 36736-36744
-
-
Cirit, M.1
Wang, C.-C.2
Haugh, J.M.3
-
21
-
-
0034306450
-
Specificity and mechanism of action of some commonly used protein kinase inhibitors
-
Davies, S. P., Reddy, H., Caivano, M. and Cohen, P. (2000) Specificity and mechanism of action of some commonly used protein kinase inhibitors. Biochem. J. 351, 95-105
-
(2000)
Biochem. J.
, vol.351
, pp. 95-105
-
-
Davies, S.P.1
Reddy, H.2
Caivano, M.3
Cohen, P.4
-
22
-
-
30044446979
-
Quantitative model of Ras-phosphoinositide 3-kinase signalling cross-talk based on co-operative molecular assembly
-
DOI 10.1042/BJ20051022
-
Kaur, H., Park, C. S., Lewis, J. M. and Haugh, J. M. (2006) Quantitative model of Ras/phosphoinositide 3-kinase signalling cross-talk based on co-operative molecular assembly. Biochem. J. 393, 235-243 (Pubitemid 43049320)
-
(2006)
Biochemical Journal
, vol.393
, Issue.1
, pp. 235-243
-
-
Kaur, H.1
Park, C.S.2
Lewis, J.M.3
Haugh, J.M.4
-
23
-
-
84055221417
-
Data-driven, mechanistic modeling of biochemical reaction networks
-
(Jayaraman, A. and Hahn, J., eds), . Artech House, London
-
Haugh, J. M., Elston, T. C., Cirit, M., Wang, C.-C., Hao, N. and Yildirim, N. (2009) Data-driven, mechanistic modeling of biochemical reaction networks. In Methods in Bioengineering: Systems Analysis of Biological Networks (Jayaraman, A. and Hahn, J., eds), pp. 57-74, Artech House, London
-
(2009)
Methods in Bioengineering: Systems Analysis of Biological Networks
, pp. 57-74
-
-
Haugh, J.M.1
Elston, T.C.2
Cirit, M.3
Wang, C.-C.4
Hao, N.5
Yildirim, N.6
-
25
-
-
35748977901
-
Universally sloppy parameter sensitivities in systems biology models
-
Gutenkunst, R. N., Waterfall, J. J., Casey, F. P., Brown, K. S., Myers, C. R. and Sethna, J. P. (2007) Universally sloppy parameter sensitivities in systems biology models. PLoS Comput. Biol. 3, e189
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Gutenkunst, R.N.1
Waterfall, J.J.2
Casey, F.P.3
Brown, K.S.4
Myers, C.R.5
Sethna, J.P.6
-
26
-
-
0025042770
-
Phosphorylation of the PDGF receptor β-subunit creates a tight binding site for phosphatidylinositol-3 kinase
-
Kazlauskas, A. and Cooper, J. A. (1990) Phosphorylation of the PDGF receptor β-subunit creates a tight binding site for phosphatidylinositol-3 kinase. EMBO J. 9, 3279-3286
-
(1990)
EMBO J.
, vol.9
, pp. 3279-3286
-
-
Kazlauskas, A.1
Cooper, J.A.2
-
27
-
-
0031964602
-
Tandem SH2 domains confer high specificity in tyrosine kinase signaling
-
DOI 10.1074/jbc.273.2.729
-
Ottinger, E. A., Botfield, M. C. and Shoelson, S. E. (1998) Tandem SH2 domains confer high specificity in tyrosine kinase signaling. J. Biol. Chem. 273, 729-735 (Pubitemid 28049159)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.2
, pp. 729-735
-
-
Ottinger, E.A.1
Botfield, M.C.2
Shoelson, S.E.3
-
28
-
-
0035902581
-
Critical role for the docking-protein FRS2α in FGF receptor-mediated signal transduction pathways
-
DOI 10.1073/pnas.161259898
-
Hadari, Y. R., Gotoh, N., Kouhara, H., Lax, I. and Schlessinger, J. (2001) Critical role for the docking-protein FRS2α in FGF receptor-mediated signal transduction pathways. Proc. Natl. Acad. Sci. U.S.A. 98, 8578-8583 (Pubitemid 32678070)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.15
, pp. 8578-8583
-
-
Hadari, Y.R.1
Gotoh, N.2
Kouhara, H.3
Lax, I.4
Schlessinger, J.5
-
29
-
-
0035933094
-
Stimulation of phosphatidylinositol 3-kinase by fibroblast growth factor receptors is mediated by coordinated recruitment of multiple docking proteins
-
DOI 10.1073/pnas.111114298
-
Ong, S. H., Hadari, Y. R., Gotoh, N., Guy, G. R., Schlessinger, J. and Lax, I. (2001) Stimulation of phosphatidylinositol 3-kinase by fibroblast growth factor receptors is mediated by coordinated recruitment of multiple docking proteins. Proc. Natl. Acad. Sci. U.S.A. 98, 6074-6079 (Pubitemid 32488195)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.11
, pp. 6074-6079
-
-
Ong, S.H.1
Hadari, Y.R.2
Gotoh, N.3
Guy, G.R.4
Schlessinger, J.5
Lax, I.6
-
30
-
-
0032436774
-
Isolated endosomes from quiescent rat liver contain the signal transduction machinery: Differential distribution of activated Raf-1 and Mek in the endocytic compartment
-
DOI 10.1016/S0014-5793(98)01517-8, PII S0014579398015178
-
Pol, A., Calvo, M. and Enrich, C. (1998) Isolated endosomes from quiescent rat liver contain the signal transduction machinery: differential distribution of activated Raf-1 and Mek in the endocytic compartment. FEBS Lett. 441, 34-38 (Pubitemid 29012367)
-
(1998)
FEBS Letters
, vol.441
, Issue.1
, pp. 34-38
-
-
Pol, A.1
Calvo, M.2
Enrich, C.3
-
31
-
-
0033607542
-
ras in fibroblasts
-
Haugh, J. M., Huang, A. C., Wiley, H. S., Wells, A. and Lauffenburger, D. A. (1999) Internalized epidermal growth factor receptors participate in the activation of p21ras in fibroblasts. J. Biol. Chem. 274, 34350-34360 (Pubitemid 129511778)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.48
, pp. 34350-34360
-
-
Haugh, J.M.1
Huang, A.C.2
Wiley, H.S.3
Wells, A.4
Lauffenburger, D.A.5
-
32
-
-
0037377118
-
Ras pathway signaling on endomembranes
-
DOI 10.1016/S0955-0674(03)00016-4
-
Bivona, T. G. and Philips, M. R. (2003) Ras pathway signaling on endomembranes. Curr. Opin. Cell Biol. 15, 136-142 (Pubitemid 36332187)
-
(2003)
Current Opinion in Cell Biology
, vol.15
, Issue.2
, pp. 136-142
-
-
Bivona, T.G.1
Philips, M.R.2
-
33
-
-
51649123011
-
Signal transduction at point-blank range: Analysis of a spatial coupling mechanism for pathway crosstalk
-
Monine, M. I. and Haugh, J. M. (2008) Signal transduction at point-blank range: analysis of a spatial coupling mechanism for pathway crosstalk. Biophys. J. 95, 2172-2182
-
(2008)
Biophys. J.
, vol.95
, pp. 2172-2182
-
-
Monine, M.I.1
Haugh, J.M.2
-
34
-
-
2442538177
-
Single-molecule imaging analysis of Ras activation in living cells
-
DOI 10.1073/pnas.0401354101
-
Murakoshi, H., Iino, R., Kobayashi, T., Fujiwara, T., Ohshima, C., Yoshimura, A. and Kusumi, A. (2004) Single-molecule imaging analysis of Ras activation in living cells. Proc. Natl. Acad. Sci. U.S.A. 101, 7317-7322 (Pubitemid 38638030)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.19
, pp. 7317-7322
-
-
Murakoshi, H.1
Iino, R.2
Kobayashi, T.3
Fujiwara, T.4
Ohshima, C.5
Yoshimura, A.6
Kusumi, A.7
-
35
-
-
27344456331
-
H-ras, K-ras, and inner plasma membrane raft proteins operate in nanoclusters with differential dependence on the actin cytoskleton
-
DOI 10.1073/pnas.0504114102
-
Plowman, S. J., Muncke, C., Parton, R. G. and Hancock, J. F. (2005) H-ras, K-ras, and inner plasma membrane raft proteins operate in nanoclusters with differential dependence on the actin cytoskeleton. Proc. Natl. Acad. Sci. U.S.A. 102, 15500-15505 (Pubitemid 41528086)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15500-15505
-
-
Plowman, S.J.1
Muncke, C.2
Parton, R.G.3
Hancock, J.F.4
-
36
-
-
18844364205
-
Subcellular localization determines MAP kinase signal output
-
DOI 10.1016/j.cub.2005.04.020, PII S0960982205003957
-
Harding, A., Tian, T. H., Westbury, E., Frische, E. and Hancock, J. F. (2005) Subcellular localization determines MAP kinase signal output. Curr. Biol. 15, 869-873 (Pubitemid 40689407)
-
(2005)
Current Biology
, vol.15
, Issue.9
, pp. 869-873
-
-
Harding, A.1
Tian, T.2
Westbury, E.3
Frische, E.4
Hancock, J.F.5
-
37
-
-
33744809296
-
A global analysis of cross-talk in a mammalian cellular signalling network
-
DOI 10.1038/ncb1418, PII N1418
-
Natarajan, M., Lin, K. M., Hsueh, R. C., Sternweis, P. C. and Ranganathan, R. (2006) A global analysis of cross-talk in a mammalian cellular signalling network. Nat. Cell Biol. 8, 571-580 (Pubitemid 43827349)
-
(2006)
Nature Cell Biology
, vol.8
, Issue.6
, pp. 571-580
-
-
Natarajan, M.1
Lin, K.-M.2
Hsueh, R.C.3
Sternweis, P.C.4
Ranganathan, R.5
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