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Volumn 18, Issue 36, 2011, Pages 5687-5693

Using feature selection technique for drug-target interaction networks prediction

Author keywords

Drug target interaction; Feature selection method; Improved bipartite learning graph method

Indexed keywords

ANDROSTENEDIOL; ARANIDIPINE; CLOMIPRAMINE; DEOXYCORTICOSTERONE; DOXERCALCIFEROL; FLECAINIDE; FLUDIAZEPAM; G PROTEIN COUPLED RECEPTOR; HYDROXYPROGESTERONE; ION CHANNEL; MODECAINIDE; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; POTASSIUM CHANNEL KV1.5; PROGESTERONE RECEPTOR; PROPAFENONE; RETINOID X RECEPTOR GAMMA; SEROTONIN 3B RECEPTOR; VITAMIN D RECEPTOR;

EID: 84055189556     PISSN: 09298673     EISSN: 1875533X     Source Type: Journal    
DOI: 10.2174/092986711798347270     Document Type: Article
Times cited : (10)

References (34)
  • 1
    • 0034677966 scopus 로고    scopus 로고
    • Drug discovery: A historical perspective
    • DOI 10.1126/science.287.5460.1960
    • Drews, J. Drug discovery: a historical perspective. Science, 2000, 287, 1960-1964. (Pubitemid 30158662)
    • (2000) Science , vol.287 , Issue.5460 , pp. 1960-1964
    • Drews, J.1
  • 2
    • 33749234216 scopus 로고    scopus 로고
    • Drugs, their targets and the nature and number of drug targets
    • DOI 10.1038/nrd2132, PII NRD2132
    • Imming, P.; Sinning, C.; Meyer, A. Drugs, their targets and the nature and number of drug targets. Nat. Rev. Drug Discov., 2006, 5, 821-834. (Pubitemid 44480536)
    • (2006) Nature Reviews Drug Discovery , vol.5 , Issue.10 , pp. 821-834
    • Imming, P.1    Sinning, C.2    Meyer, A.3
  • 3
    • 0037061492 scopus 로고    scopus 로고
    • Dissecting glucose signalling with diversity-oriented synthesis and small-molecule microarrays
    • DOI 10.1038/416653a
    • Kuruvilla, F.G.; Shamji, A.F.; Sternson, S.M.; Hergenrother, P.J.; Schreiber, S.L. Dissecting glucose signalling with diversity-oriented synthesis and small-molecule microarrays. Nature, 2002, 416, 653-657. (Pubitemid 34406768)
    • (2002) Nature , vol.416 , Issue.6881 , pp. 653-657
    • Kuruvilla, F.G.1    Shamji, A.F.2    Sternson, S.M.3    Hergenrother, P.J.4    Schreiber, S.L.5
  • 4
    • 0038522853 scopus 로고    scopus 로고
    • Multidimensional chemical genetic analysis of diversity-oriented synthesis-derived deacetylase inhibitors using cell-based assays
    • DOI 10.1016/S1074-5521(03)00095-4
    • Haggarty, S.J.; Koeller, K.M.; Wong, J.C.; Butcher, R.A.; Schreiber, S.L. Multidimensional chemical genetic analysis of diversity oriented synthesisderived deacetylase inhibitors using cell-based assays. Chem. Biol., 2003, 10, 383-396. (Pubitemid 36610312)
    • (2003) Chemistry and Biology , vol.10 , Issue.5 , pp. 383-396
    • Haggarty, S.J.1    Koeller, K.M.2    Wong, J.C.3    Butcher, R.A.4    Schreiber, S.L.5
  • 7
  • 8
    • 77956953029 scopus 로고    scopus 로고
    • Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces
    • Xia, Z.; Wu, L.Y.; Zhou, X.; Wong, S.T. Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces. BMC. Syst Biol., 2010, 4, S6.
    • (2010) BMC. Syst Biol. , vol.4
    • Xia, Z.1    Wu, L.Y.2    Zhou, X.3    Wong, S.T.4
  • 9
    • 46249090791 scopus 로고    scopus 로고
    • Prediction of drug-target interaction networks from the integration of chemical and genomic spaces
    • DOI 10.1093/bioinformatics/btn162
    • Yamanishi, Y.; Araki, M.; Cutteridge, A.; Honda, W.; Kanehisa, M. Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. Bioinformatics, 2008, 24, i232-i240. (Pubitemid 351911678)
    • (2008) Bioinformatics , vol.24 , Issue.13
    • Yamanishi, Y.1    Araki, M.2    Gutteridge, A.3    Honda, W.4    Kanehisa, M.5
  • 10
    • 69849094133 scopus 로고    scopus 로고
    • Supervised prediction of drug-target interactions using bipartite local models
    • Bleakley, K.; Yamanishi, Y. Supervised prediction of drug-target interactions using bipartite local models. Bioinformatics, 2009, 25, 2397-2403.
    • (2009) Bioinformatics , vol.25 , pp. 2397-2403
    • Bleakley, K.1    Yamanishi, Y.2
  • 11
    • 59149084486 scopus 로고    scopus 로고
    • Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach
    • Gonzalez-Diaz, H.; Prado-Prado, F.; Ubeira, F. M. Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach. Curr Top Med Chem., 2008, 8, 1676-1690.
    • (2008) Curr Top Med Chem. , vol.8 , pp. 1676-1690
    • Gonzalez-Diaz, H.1    Prado-Prado, F.2    Ubeira, F.M.3
  • 13
    • 67249095008 scopus 로고    scopus 로고
    • Alignment-Free Prediction of a Drug-Target Complex Network Based on Parameters of Drug Connectivity and Protein Sequence of Receptors
    • Vina, D.; Uriarte, E.; Orallo, F.; Gonzalez-Diaz, H. Alignment-Free Prediction of a Drug-Target Complex Network Based on Parameters of Drug Connectivity and Protein Sequence of Receptors. Mol Pharm., 2009, 6, 825-835.
    • (2009) Mol Pharm. , vol.6 , pp. 825-835
    • Vina, D.1    Uriarte, E.2    Orallo, F.3    Gonzalez-Diaz, H.4
  • 20
    • 77950448057 scopus 로고    scopus 로고
    • Predicting drug-target interaction networks based on functional groups and biological features
    • He, Z.; Zhang, J.; Shi, X.H.; Hu, L.L.; Kong, X.; Cai, Y.D.; Chou, K.C. Predicting drug-target interaction networks based on functional groups and biological features. PLoS One, 2010, 5, e9603.
    • (2010) PLoS One , vol.5
    • He, Z.1    Zhang, J.2    Shi, X.H.3    Hu, L.L.4    Kong, X.5    Cai, Y.D.6    Chou, K.C.7
  • 21
    • 35748932917 scopus 로고    scopus 로고
    • A review of feature selection techniques in bioinformatics
    • DOI 10.1093/bioinformatics/btm344
    • Saeys, Y.; Inza, I.; Larranaga, P. A review of feature selection techniques in bioinformatics. Bioinformatics, 2007, 23, 2507-2517. (Pubitemid 350048351)
    • (2007) Bioinformatics , vol.23 , Issue.19 , pp. 2507-2517
    • Saeys, Y.1    Inza, I.2    Larranaga, P.3
  • 23
    • 0141843591 scopus 로고    scopus 로고
    • Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways
    • DOI 10.1021/ja036030u
    • Hattori, M.; Okuno, Y.; Goto, S.; Kanehisa, M. Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways. J. Am. Chem. Soc., 2003, 125, 11853-11865. (Pubitemid 37175419)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.39 , pp. 11853-11865
    • Hattori, M.1    Okuno, Y.2    Goto, S.3    Kanehisa, M.4
  • 25
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T.F.; Waterman, M. Identification of common molecular subsequences. J. Mol. Biol., 1981, 147,195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.2
  • 27
    • 58749107670 scopus 로고    scopus 로고
    • Unified QSAR approach to antimicrobials. 4. Multi-target QSAR modeling and comparative multi-distance study of the giant components of antiviral drug-drug complex networks
    • Prado-Prado, F. J.; Martinez de la Vega, O.; Uriarte, E.; Ubeira, F. M.; Chou, K. C.; Gonzalez-Diaz, H. Unified QSAR approach to antimicrobials. 4. Multi-target QSAR modeling and comparative multi-distance study of the giant components of antiviral drug-drug complex networks. Bioorg Med Chem., 2009, 17, 569-575.
    • (2009) Bioorg Med Chem. , vol.17 , pp. 569-575
    • Prado-Prado, F.J.1    De La Martinez, V.O.2    Uriarte, E.3    Ubeira, F.M.4    Chou, K.C.5    Gonzalez-Diaz, H.6
  • 28
    • 33747816816 scopus 로고    scopus 로고
    • PROFEAT: A web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence
    • DOI 10.1093/nar/gkl305
    • Li, Z.R.; Lin, H.H.; Han, L.Y.; Jiang, L.; Chen, X., Chen, Y.Z. PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. Nucleic Acids Res., 2006, 34, W32-W37. (Pubitemid 44529730)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Li, Z.R.1    Lin, H.H.2    Han, L.Y.3    Jiang, L.4    Chen, X.5    Chen, Y.Z.6
  • 29
    • 24344458137 scopus 로고    scopus 로고
    • Feature selection based on mutual information: Criteria of Max-Dependency, Max-Relevance, and Min-Redundancy
    • DOI 10.1109/TPAMI.2005.159
    • Peng, H.; Long, F.; Ding, C. Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell., 2005, 27,1226-1238. (Pubitemid 41245053)
    • (2005) IEEE Transactions on Pattern Analysis and Machine Intelligence , vol.27 , Issue.8 , pp. 1226-1238
    • Peng, H.1    Long, F.2    Ding, C.3
  • 30
    • 34248585875 scopus 로고    scopus 로고
    • Prediction model building and feature selection with support vector machines in breast cancer diagnosis
    • Huang, C.L.; Liao, H.C.; Chen, M.C. Prediction model building and feature selection with support vector machines in breast cancer diagnosis. Expert Systems with Applications, 2008, 34, 578-587.
    • (2008) Expert Systems with Applications , vol.34 , pp. 578-587
    • Huang, C.L.1    Liao, H.C.2    Chen, M.C.3
  • 31
    • 77953609581 scopus 로고    scopus 로고
    • Application of support-vector-machinebased method for feature selection and classification of thyroid nodules in ultrasound images
    • Chang, C.Y.; Chen, S.J.; Tsai, M.F. Application of support-vector- machinebased method for feature selection and classification of thyroid nodules in ultrasound images. Pattern Recognition, 2010, 43, 3494-3506.
    • (2010) Pattern Recognition , vol.43 , pp. 3494-3506
    • Chang, C.Y.1    Chen, S.J.2    Tsai, M.F.3
  • 32
    • 84942484786 scopus 로고
    • Ridge regression: Biased estimation for noorthogonal problems
    • Hoerl, A.E.; Kennard, R.W. Ridge regression: Biased estimation for noorthogonal problems. Technometrics, 1970, 12, 55-67.
    • (1970) Technometrics , vol.12 , pp. 55-67
    • Hoerl, A.E.1    Kennard, R.W.2
  • 34
    • 54249155522 scopus 로고    scopus 로고
    • Network pharmacology: The next paradigm in drug discovery
    • Hopkins, A.L. Network pharmacology: the next paradigm in drug discovery. Nat. Chem. Biol., 2008, 4, 682-690.
    • (2008) Nat. Chem. Biol. , vol.4 , pp. 682-690
    • Hopkins, A.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.