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Volumn 25, Issue 18, 2009, Pages 2397-2403

Supervised prediction of drug-target interactions using bipartite local models

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS RECEPTOR; ESTROGEN RECEPTOR; G PROTEIN COUPLED RECEPTOR; HEPATOCYTE NUCLEAR FACTOR 4; ION CHANNEL; ISOTRETINOIN; MOMETASONE FUROATE; NORETHISTERONE; PROGESTERONE RECEPTOR; RETINOIC ACID; RETINOIC ACID RECEPTOR ALPHA; RETINOIC ACID RECEPTOR BETA; RETINOID X RECEPTOR ALPHA; RETINOID X RECEPTOR BETA; RETINOID X RECEPTOR GAMMA; TESTOSTERONE;

EID: 69849094133     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp433     Document Type: Article
Times cited : (544)

References (29)
  • 1
    • 34547844158 scopus 로고    scopus 로고
    • Supervised reconstruction of biological networks with local models
    • Bleakley,K. et al. (2007) Supervised reconstruction of biological networks with local models. Bioinformatics, 23, i57-i65.
    • (2007) Bioinformatics , vol.23
    • Bleakley, K.1
  • 2
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • Campillos,M. et al. (2008) Drug target identification using side-effect similarity. Science, 321, 263-266.
    • (2008) Science , vol.321 , pp. 263-266
    • Campillos, M.1
  • 4
    • 33846155913 scopus 로고    scopus 로고
    • Structure-based maximal affinity model predicts small-molecule druggability
    • Cheng,A. et al. (2007) Structure-based maximal affinity model predicts small-molecule druggability. Nat. Biotechnol., 25, 71-75.
    • (2007) Nat. Biotechnol , vol.25 , pp. 71-75
    • Cheng, A.1
  • 5
    • 11144341956 scopus 로고    scopus 로고
    • Chemical space and biology
    • Dobson,C. (2004) Chemical space and biology. Nature, 432, 824-828.
    • (2004) Nature , vol.432 , pp. 824-828
    • Dobson, C.1
  • 6
    • 38549182474 scopus 로고    scopus 로고
    • Supertarget and matador: Resources for exploring drug-target relationships
    • Gunther,S. et al. (2008) Supertarget and matador: Resources for exploring drug-target relationships. Nucleic Acids Res., 36, D919-D922.
    • (2008) Nucleic Acids Res , vol.36
    • Gunther, S.1
  • 7
    • 0038522853 scopus 로고    scopus 로고
    • Multidimensional chemical genetic analysis of diversity-oriented synthesis-derived deacetylase inhibitors using cell-based assays
    • Haggarty,S. et al. (2003) Multidimensional chemical genetic analysis of diversity-oriented synthesis-derived deacetylase inhibitors using cell-based assays. Chem. Biol., 10, 383-396.
    • (2003) Chem. Biol , vol.10 , pp. 383-396
    • Haggarty, S.1
  • 8
    • 0141843591 scopus 로고    scopus 로고
    • Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways
    • Hattori,M. et al. (2003) Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways. J. Am. Chem. Soc., 125 11853-11865.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 11853-11865
    • Hattori, M.1
  • 9
    • 52749085437 scopus 로고    scopus 로고
    • Protein-ligand interaction prediction: An improved chemogenomics approach
    • Jacob,L. and Vert,J.-P. (2008) Protein-ligand interaction prediction: An improved chemogenomics approach. Bioinformatics, 24, 2149-2156.
    • (2008) Bioinformatics , vol.24 , pp. 2149-2156
    • Jacob, L.1    Vert, J.-P.2
  • 10
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: New developments in KEGG
    • Kanehisa,M. et al. (2006) From genomics to chemical genomics: New developments in KEGG. Nucleic Acids Res., 34, D354-D357.
    • (2006) Nucleic Acids Res , vol.34
    • Kanehisa, M.1
  • 11
    • 33846876695 scopus 로고    scopus 로고
    • Relating protein pharmacology by ligand chemistry
    • Keiser,M. et al. (2007) Relating protein pharmacology by ligand chemistry. Nat. Biotechnol., 25, 197-206.
    • (2007) Nat. Biotechnol , vol.25 , pp. 197-206
    • Keiser, M.1
  • 12
    • 0037061492 scopus 로고    scopus 로고
    • Dissecting glucose signalling with diversity-oriented synthesis and small-molecule microarrays
    • Kuruvilla,F. et al. (2002) Dissecting glucose signalling with diversity-oriented synthesis and small-molecule microarrays. Nature 416, 653-657.
    • (2002) Nature , vol.416 , pp. 653-657
    • Kuruvilla, F.1
  • 13
    • 0029044431 scopus 로고
    • Suppression of retinoic acid receptor-β in premalignant oral lesions and its up-regulation by isotretinoin
    • Lotan,R. et al. (1995) Suppression of retinoic acid receptor-β in premalignant oral lesions and its up-regulation by isotretinoin. N. Engl. J. Med., 332, 1405-1410.
    • (1995) N. Engl. J. Med , vol.332 , pp. 1405-1410
    • Lotan, R.1
  • 14
    • 33750294461 scopus 로고    scopus 로고
    • The pharmacophore kernel for virtual screening with support vector machines
    • Mahe,P. et al. (2006) The pharmacophore kernel for virtual screening with support vector machines. J. Chem. Inf. Model., 46, 2003-2014.
    • (2006) J. Chem. Inf. Model , vol.46 , pp. 2003-2014
    • Mahe, P.1
  • 15
    • 49549104230 scopus 로고    scopus 로고
    • SIRENE: Supervised inference of regulatory networks
    • Mordelet,F. and Vert,J.-P. (2008) SIRENE: Supervised inference of regulatory networks. Bioinformatics, 24, i76-i82.
    • (2008) Bioinformatics , vol.24
    • Mordelet, F.1    Vert, J.-P.2
  • 16
    • 34548128437 scopus 로고    scopus 로고
    • Statistical prediction of proteinDchemical interactions based on chemical structure and mass spectrometry data
    • Nagamine,N. and Sakakibara,Y. (2007) Statistical prediction of proteinDchemical interactions based on chemical structure and mass spectrometry data. Bioinformatics, 23, 2004-2012.
    • (2007) Bioinformatics , vol.23 , pp. 2004-2012
    • Nagamine, N.1    Sakakibara, Y.2
  • 17
    • 5344244656 scopus 로고    scopus 로고
    • R Development Core Team , R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0
    • R Development Core Team (2008) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0.
    • (2008) R: A Language and Environment for Statistical Computing
  • 18
    • 0030599010 scopus 로고    scopus 로고
    • Afast flexible docking method using an incremental construction algorithm
    • Rarey,M. et al. (1996) Afast flexible docking method using an incremental construction algorithm. J. Mol. Biol., 261, 470-489.
    • (1996) J. Mol. Biol , vol.261 , pp. 470-489
    • Rarey, M.1
  • 19
    • 4444273377 scopus 로고    scopus 로고
    • Protein homology detection using string alignment kernels
    • Saigo,H. et al. (2004) Protein homology detection using string alignment kernels. Bioinformatics, 20, 1682-1689.
    • (2004) Bioinformatics , vol.20 , pp. 1682-1689
    • Saigo, H.1
  • 22
    • 0345863907 scopus 로고    scopus 로고
    • BRENDA, the enzyme database: Updates and major new developments
    • Schomburg,I. et al. (2004) BRENDA, the enzyme database: Updates and major new developments. Nucleic Acids Res., 32, D431-D433.
    • (2004) Nucleic Acids Res , vol.32
    • Schomburg, I.1
  • 23
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith,T.F. and Waterman,M. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.2
  • 24
    • 0034331004 scopus 로고    scopus 로고
    • Chemical genetics: Ligand-based discovery of gene function
    • Stockwell,B.R. (2000) Chemical genetics: Ligand-based discovery of gene function. Nat. Rev. Genet., 1, 116-125.
    • (2000) Nat. Rev. Genet , vol.1 , pp. 116-125
    • Stockwell, B.R.1
  • 26
    • 33644876253 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Wheeler,D. et al. (2006) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 34, D173-D180.
    • (2006) Nucleic Acids Res , vol.34
    • Wheeler, D.1
  • 27
    • 38549151817 scopus 로고    scopus 로고
    • DrugBank: A knowledgebase for drugs, drug actions and drug targets
    • Wishart,D. et al. (2008) DrugBank: A knowledgebase for drugs, drug actions and drug targets. Nucleic Acids Res., 36, D901-D906.
    • (2008) Nucleic Acids Res , vol.36
    • Wishart, D.1
  • 29
    • 46249090791 scopus 로고    scopus 로고
    • Prediction of drug-target interaction networks from the integration of chemical and genomic spaces
    • Yamanishi,Y. et al. (2008) Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. Bioinformatics, 24, i232-i240.
    • (2008) Bioinformatics , vol.24
    • Yamanishi, Y.1


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