DNA barcoding of endangered Indian Paphiopedilum species

Molecular Ecology Resources

Volumn 12, Issue 1, 2012, Pages 82-90

  Parveen, Iffat ^a   Singh, Hemant K ^a   Raghuvanshi, Saurabh ^a   Pradhan, Udai C ^b   Babbar, Shashi B ^a  

^a UNIVERSITY OF DELHI   (India)

^b UC Pradhan Orchid Labs   (India)

Author keywords

DNA barcodes; Endangered species; matK; Paphiopedilum

Indexed keywords

VEGETABLE PROTEIN;

ARTICLE; CLASSIFICATION; DNA BARCODING; ENDANGERED SPECIES; GENETIC VARIABILITY; GENETICS; INDIA; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; ORCHIDACEAE; PHYLOGENY;

DNA BARCODING, TAXONOMIC; ENDANGERED SPECIES; GENETIC VARIATION; INDIA; MOLECULAR SEQUENCE DATA; ORCHIDACEAE; PHYLOGENY; PLANT PROTEINS;

ANIMALIA; PAPHIOPEDILUM;

EID: 83955164240     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03071.x     Document Type: Article

References (40)

1. CBOL Plant Working Group (2009) A DNA barcode for land plants. Proceedings of National Academy of Sciences, USA, 106, 12794-12797.
2. Chang CC, Lin HC, Lin IP et al. (2006) The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications. Molecular Biology and Evolution, 23, 279-291.
3. Chase MW, Salamin N, Wilkinson M et al. (2005) Land plants and DNA barcodes: short-term and long-term goals. Philosophical Transactions of the Royal Society of London series B Biological Sciences, 360, 1889-1895.
4. Chase MW, Cowan RS, Hollingsworth PM et al. (2007) A proposal for a standardized protocol to barcode all land plants. Taxon, 56, 295-299.
5. Chen S, Yao H, Han J et al. (2010) Validation of ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS ONE, 5, e8613.
6. Chowdhery HJ (1998) Orchid Flora of Arunachal Pradesh. Shiva Offset Press, Dehradun, India.
7. Chung SY, Choi SH, Kim MJ et al. (2006) Genetic relationship and differentiation of Paphiopedilum and Phragmepedium based on RAPD analysis. Scientia Horticulturae, 109, 153-159.
8. Eaton MJ, Meyers GL, Kolokotronis SO et al. (2010) Barcoding bushmeat: molecular identification of Central African and South American harvested vertebrates. Conservation Genetics, 11, 1389-1404.
9. Fazekas AJ, Burgess KS, Kesanakurti PR et al. (2008) Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS ONE, 3, e2802.
10. Ferri G, Alù M, Corradini B, Beduschi G (2009) Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach. International Journal of Legal Medicine, 123, 395-401.
11. Gao T, Yao H, Song J et al. (2010) Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family. BMC Evolutionary Biology, 10, 324-330.
12. Gao T, Sun Z, Yao H, Song J, Zhu Y (2011) Identification of Fabaceae plants using the DNA barcode matK. Planta Medica, 77, 92-94.
13. He J, Wong KL, Shaw PC, Wang H, Li DZ (2010) Identification of the medicinal plants in Aconitum L. by DNA barcoding technique. Planta Medica, 76, 1622-1628.
14. Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003a) Biological identifications through DNA barcodes. Philosophical Transactions of the Royal Society of London series B Biological Sciences, 270, 313-321.
15. Hebert PDN, Ratnasingham S, de Waard JR (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Philosophical Transactions of the Royal Society of London series B Biological Sciences, 270, S96-S99.
16. Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM (2004a) Identification of birds through DNA barcodes. PLoS Biology, 2, e312.
17. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004b) Ten species in one: DNA barcoding reveals cryptic species in neotropical skipper butterfly Astraptes fulgerator. Proceedings of National Academy of Sciences, USA, 101, 14812-14817.
18. Hollingsworth ML, Clark A, Foerrest LL et al. (2009) Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants. Molecular Ecology Resources, 9, 439-457.
19. Jeanson ML, Labat JN, Little DP (2011) DNA barcoding: a new tool for palm taxonomists? Annals of Botany, in press; DOI:.
20. Johnson RN (2010) The use of DNA identification in prosecuting wildlife-traffickers in Australia: do the penalties fit the crimes? Forensic Science Medicine and Pathology, 6, 211-216.
21. Kelly LJ, Ameka GK, Chase MW (2010) DNA barcoding of African podostemaceae (river-weeds): a test of proposed barcode regions. Taxon, 59, 251-260.
22. Kress WJ, Erickson DL (2007) A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE, 2, e508.
23. Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. Proceedings of National Academy of Sciences, USA, 102, 8369-8374.
24. Kumar P, Gupta VK, Misra AK, Modi DR, Pandey BK (2009) Molecular markers in plant biotechnology. Plant Omics Journal, 2, 141-162.
25. Lahaye R, Van der Bank M, Bogarin D et al. (2008) DNA barcoding the floras of biodiversity hotspots. Proceedings of National Academy of Sciences, USA, 105, 2923-2928.
26. Muellner AN, Schaefer H, Lahaye R (2011) Evaluation of candidate DNA barcoding loci for economically important timber species of the mahogany family (Meliaceae). Molecular Ecology Resources, 11, 450-460.
27. Newmaster SG, Ragupathy S (2009) Testing plant barcoding in a sister species complex of pantropical Acacia (Mimosoideae, Fabaceae). Molecular Ecology Resources, 9, 172-180.
28. Newmaster SG, Fazekas AJ, Ragupathy S (2006) DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach. Canadian Journal of Botany, 84, 335-341.
29. Nilsson RH, Ryberg M, Kristiansson E et al. (2006) Taxonomic reliability of DNA sequences in public sequence data bases - a fungal perspective. PLoS ONE, 1, e59.
30. Pang X, Song J, Zhu Y, Xie C, Chen S (2010) Using DNA barcoding to identify species within Euphorbiaceae. Planta Medica, 76, 1784-1786.
31. Ragupathy S, Newmaster SG, Murugesan M, Balasubramaniam V (2009) DNA barcoding discriminates a new cryptic grass species revealed in an ethnobotany study by the hill tribes of the Western Ghats in southern India. Molecular Ecology Resources, 9, 164-171.
32. Rao NA (2006) Variability identification of Paphiopedilum, Anthigonium and some vandaceous species (orchidaceae genotypes- their maintenance and propagation technology. Bulletin of Arunachal Forest Research, 22, 45-51.
33. Sass C, Little DP, Stevenson DW, Specht CD (2007) DNA barcoding in the Cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS ONE, 2, e1154.
34. Seberg O, Petersen G (2009) How many loci does it take to DNA barcode a Crocus? PLoS ONE, 4, e4598.
35. Soininen EM, Valentini A, Coissac E et al. (2009) Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures. Frontiers in Zoology, 6, 16-24.
36. Sun WY, Liao YJ, Hung SY, Chang JC, Sung MJ (2011) Development of ITS based SCAR markers for discrimination of Paphiopedilum armeniacum, Paphiopedilum micranthum, Paphiopedilum delenatii and their hybrids. Scientia Horticulturae, 127, 405-410.
37. Tsai CC, Peng CI, Huang SC, Huang PL, Chou CH (2004) Determination of the genetic relationship of Dendrobium species (Orchidaceae) in Taiwan based on the sequence of the internal transcribed spacer of ribosomal DNA. Scientia Horticulturae, 101, 315-325.
38. Yao H, Song JY, Ma XY et al. (2009) Identification of Dendrobium species by a candidate DNA barcode sequence: the chloroplast psbA-trnH intergenic region. Planta Medica, 75, 667-669.
39. Yao H, Song J, Liu C et al. (2010) Use of ITS2 region as the universal DNA barcode for plants and animals. PLoS ONE, 5, e13102.
40. Yesson C, Barcenas RT, Hernandez HM et al. (2011) DNA barcodes for Mexican Cactaceae, plants under pressure from wild collecting. Molecular Ecology Resources, 11, 775-783.