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Volumn 11, Issue 5, 2011, Pages 775-783

DNA barcodes for Mexican Cactaceae, plants under pressure from wild collecting

Author keywords

Conservation; DNA barcodes; Internal transcribed spacer; matK; Opuntioideae; Species identification

Indexed keywords

MESSENGER RIBONUCLEIC ACID MATURASE; NUCLEOTIDYLTRANSFERASE; PRIMER DNA; RIBONUCLEASE; RIBOSOMAL SPACER DNA;

EID: 80051677508     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03009.x     Document Type: Article
Times cited : (35)

References (40)
  • 1
    • 0003704303 scopus 로고    scopus 로고
    • Timber Press Inc., Portland, Oregon.
    • Anderson EF (2001) The Cactus Family. Timber Press Inc., Portland, Oregon.
    • (2001) The Cactus Family
    • Anderson, E.F.1
  • 3
    • 85032133499 scopus 로고
    • Molecular Phylogenetics of Calycadenia (Compositae) Based on ITS Sequences of Nuclear Ribosomal DNA - Chromosomal and Morphological Evolution Reexamined
    • Baldwin BG (1993) Molecular Phylogenetics of Calycadenia (Compositae) Based on ITS Sequences of Nuclear Ribosomal DNA - Chromosomal and Morphological Evolution Reexamined. American Journal of Botany, 80, 222-238.
    • (1993) American Journal of Botany , vol.80 , pp. 222-238
    • Baldwin, B.G.1
  • 4
    • 77954816893 scopus 로고    scopus 로고
    • Chihuahuan Desert Cacti in Mexico: an assessment of trade, management, and conservation priorities
    • In: (ed. Robbins CS) Traffic, Washington, D.C
    • Bárcenas-Luna RT (2003) Chihuahuan Desert Cacti in Mexico: an assessment of trade, management, and conservation priorities. In: Prickly trade: trade and conservation of Chihuahuan Desert cacti (ed. Robbins CS), pp. 1-65. Traffic, Washington, D.C.
    • (2003) Prickly trade: trade and conservation of Chihuahuan Desert cacti , pp. 1-65
    • Bárcenas-Luna, R.T.1
  • 8
    • 0042734994 scopus 로고    scopus 로고
    • Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae)
    • Chase MW, Knapp S, Cox AV et al. (2003) Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae). Annals of Botany, 92, 107-127.
    • (2003) Annals of Botany , vol.92 , pp. 107-127
    • Chase, M.W.1    Knapp, S.2    Cox, A.V.3
  • 9
    • 34347387600 scopus 로고    scopus 로고
    • A proposal for a standardised protocol to barcode all land plants
    • Chase MW, Cowan RS, Hollingsworth PM et al. (2007) A proposal for a standardised protocol to barcode all land plants. Taxon, 56, 295-299.
    • (2007) Taxon , vol.56 , pp. 295-299
    • Chase, M.W.1    Cowan, R.S.2    Hollingsworth, P.M.3
  • 10
    • 0002440004 scopus 로고    scopus 로고
    • Cladistic parsimony analysis of internal transcribed spacer region (nrDNA) sequences of Bouteloua and relatives (Gramineae: Chloridoideae)
    • Columbus JT, Kinney MS, Pant R, Siqueiros-Delgado ME (1998) Cladistic parsimony analysis of internal transcribed spacer region (nrDNA) sequences of Bouteloua and relatives (Gramineae: Chloridoideae). Aliso, 17, 99-130.
    • (1998) Aliso , vol.17 , pp. 99-130
    • Columbus, J.T.1    Kinney, M.S.2    Pant, R.3    Siqueiros-Delgado, M.E.4
  • 11
    • 33749562542 scopus 로고    scopus 로고
    • 300,000 species to identify: problems, progress, and prospects in DNA barcoding of land plants
    • Cowan RS, Chase MW, Kress WJ, Savolainen V (2006) 300, 000 species to identify: problems, progress, and prospects in DNA barcoding of land plants. Taxon, 55, 611-616.
    • (2006) Taxon , vol.55 , pp. 611-616
    • Cowan, R.S.1    Chase, M.W.2    Kress, W.J.3    Savolainen, V.4
  • 12
    • 0036188663 scopus 로고    scopus 로고
    • Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences
    • Cuenoud P, Savolainen V, Chatrou LW et al. (2002) Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. American Journal of Botany, 89, 132-144.
    • (2002) American Journal of Botany , vol.89 , pp. 132-144
    • Cuenoud, P.1    Savolainen, V.2    Chatrou, L.W.3
  • 13
    • 0036056608 scopus 로고    scopus 로고
    • Comparison of seven DNA extraction and amplification protocols in historical herbarium specimens of Juncaceae
    • Drabkova L, Kirschner J, Vlcek C (2002) Comparison of seven DNA extraction and amplification protocols in historical herbarium specimens of Juncaceae. Plant Molecular Biology Reporter, 20, 161-175.
    • (2002) Plant Molecular Biology Reporter , vol.20 , pp. 161-175
    • Drabkova, L.1    Kirschner, J.2    Vlcek, C.3
  • 14
    • 57749196958 scopus 로고    scopus 로고
    • DNA barcoding of a large genus, Aspalathus L. (Fabaceae)
    • Edwards D, Horn A, Taylor D, Savolain V, Hawkins J (2008) DNA barcoding of a large genus, Aspalathus L. (Fabaceae). Taxon, 57, 1317-1327.
    • (2008) Taxon , vol.57 , pp. 1317-1327
    • Edwards, D.1    Horn, A.2    Taylor, D.3    Savolain, V.4    Hawkins, J.5
  • 15
    • 50949125486 scopus 로고    scopus 로고
    • Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well
    • Fazekas AJ, Burgess KS, Kesanakurti PR et al. (2008) Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS ONE, 3, e2802.
    • (2008) PLoS ONE , vol.3
    • Fazekas, A.J.1    Burgess, K.S.2    Kesanakurti, P.R.3
  • 16
    • 33751324390 scopus 로고    scopus 로고
    • A minimalist barcode can identify a specimen whose DNA is degraded
    • Hajibabaei M, Smith MA, Janzen DH et al. (2006) A minimalist barcode can identify a specimen whose DNA is degraded. Molecular Ecology Notes, 6, 959-964.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 959-964
    • Hajibabaei, M.1    Smith, M.A.2    Janzen, D.H.3
  • 17
    • 36849053404 scopus 로고    scopus 로고
    • Characterization of microsatellite loci for the endangered cactus Echinocactus grusonii, and their cross-species utilization
    • Hardesty BD, Hughes SL, Rodríguez VM, Hawkins JA (2008) Characterization of microsatellite loci for the endangered cactus Echinocactus grusonii, and their cross-species utilization. Molecular Ecology Resources, 8, 164-167.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 164-167
    • Hardesty, B.D.1    Hughes, S.L.2    Rodríguez, V.M.3    Hawkins, J.A.4
  • 18
    • 43449086680 scopus 로고    scopus 로고
    • Extensive 5.8S nrDNA polymorphism in Mammillaria (Cactaceae) with special reference to the identification of pseudogenic internal transcribed spacer regions
    • Harpke D, Peterson A (2008) Extensive 5.8S nrDNA polymorphism in Mammillaria (Cactaceae) with special reference to the identification of pseudogenic internal transcribed spacer regions. Journal of Plant Research, 121, 261-270.
    • (2008) Journal of Plant Research , vol.121 , pp. 261-270
    • Harpke, D.1    Peterson, A.2
  • 19
    • 0034946250 scopus 로고    scopus 로고
    • Extensive ribosomal DNA genic variation in the columnar cactus Lophocereus
    • Hartmann S, Nason J, Bhattacharya D (2001) Extensive ribosomal DNA genic variation in the columnar cactus Lophocereus. Journal of Molecular Evolution, 53, 124-134.
    • (2001) Journal of Molecular Evolution , vol.53 , pp. 124-134
    • Hartmann, S.1    Nason, J.2    Bhattacharya, D.3
  • 20
    • 31344432889 scopus 로고    scopus 로고
    • The promise of DNA barcoding for taxonomy
    • Hebert PDN, Gregory TR (2005) The promise of DNA barcoding for taxonomy. Systematic Biology, 54, 852-859.
    • (2005) Systematic Biology , vol.54 , pp. 852-859
    • Hebert, P.D.N.1    Gregory, T.R.2
  • 21
    • 50849104531 scopus 로고    scopus 로고
    • Characterisation of microsatellite loci for the critically endangered cactus Ariocarpus bravoanus
    • Hughes SL, Rodríguez VM, Hardesty BD et al. (2008) Characterisation of microsatellite loci for the critically endangered cactus Ariocarpus bravoanus. Molecular Ecology Resources, 8, 1068-1070.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 1068-1070
    • Hughes, S.L.1    Rodríguez, V.M.2    Hardesty, B.D.3
  • 24
    • 80051694514 scopus 로고    scopus 로고
    • IUCN IUCN Red List of Threatened Species. Available from (Downloaded on 12th August 2008).
    • IUCN (2008) IUCN Red List of Threatened Species. Available from (Downloaded on 12th August 2008).
    • (2008)
  • 25
    • 0028005898 scopus 로고
    • Matk DNA-Sequences and Phylogenetic Reconstruction in Saxifragaceae S-Str
    • Johnson LA, Soltis DE (1994) Matk DNA-Sequences and Phylogenetic Reconstruction in Saxifragaceae S-Str. Systematic Botany, 19, 143-156.
    • (1994) Systematic Botany , vol.19 , pp. 143-156
    • Johnson, L.A.1    Soltis, D.E.2
  • 26
    • 77951631088 scopus 로고    scopus 로고
    • A Two-Locus Global DNA Barcode for Land Plants: the Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region
    • Kress WJ, Erickson DL (2007) A Two-Locus Global DNA Barcode for Land Plants: the Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region. PLoS ONE, 2, e508.
    • (2007) PLoS ONE , vol.2
    • Kress, W.J.1    Erickson, D.L.2
  • 29
    • 33847767178 scopus 로고    scopus 로고
    • A comparison of algorithms for identification of specimens using DNA barcodes: examples from gymnosperms
    • Little DP, Stevenson DW (2007) A comparison of algorithms for identification of specimens using DNA barcodes: examples from gymnosperms. Cladistics, 23, 1-21.
    • (2007) Cladistics , vol.23 , pp. 1-21
    • Little, D.P.1    Stevenson, D.W.2
  • 32
    • 0036189278 scopus 로고    scopus 로고
    • Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK/matK and trnL-trnF sequences
    • Nyffeler R (2002) Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK/matK and trnL-trnF sequences. American Journal of Botany, 89, 312-326.
    • (2002) American Journal of Botany , vol.89 , pp. 312-326
    • Nyffeler, R.1
  • 34
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D, Crandall K (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.2
  • 36
    • 42649090839 scopus 로고    scopus 로고
    • DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads
    • Sass C, Little DP, Stevenson DW, Specht CD (2007) DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS ONE, 2, e1154.
    • (2007) PLoS ONE , vol.2
    • Sass, C.1    Little, D.P.2    Stevenson, D.W.3    Specht, C.D.4
  • 37
    • 19944430021 scopus 로고    scopus 로고
    • The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
    • Shaw J, Lickey EB, Beck JT et al. (2005) The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany, 92, 142-166.
    • (2005) American Journal of Botany , vol.92 , pp. 142-166
    • Shaw, J.1    Lickey, E.B.2    Beck, J.T.3
  • 38
    • 65349160947 scopus 로고    scopus 로고
    • Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae)
    • Starr J, Naczi R, Chouinard B (2009) Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae). Molecular Ecology Resources, 9, 151-163.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 151-163
    • Starr, J.1    Naczi, R.2    Chouinard, B.3
  • 40
    • 0027968068 scopus 로고
    • Clustal-W - Improving the Sensitivity of Progressive Multiple Sequence Alignment through Sequence Weighting, Position-Specific Gap Penalties and Weight Matrix Choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) Clustal-W - Improving the Sensitivity of Progressive Multiple Sequence Alignment through Sequence Weighting, Position-Specific Gap Penalties and Weight Matrix Choice. Nucleic Acids Research, 22, 4673-4680.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


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