Molecular and morphological evidences place the extinct New Zealand endemic Turnagra capensis in the Oriolidae

Molecular Phylogenetics and Evolution

Volumn 62, Issue 1, 2012, Pages 414-426

  Zuccon, Dario ^a   Ericson, Per G P ^a  

^a SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

Archival DNA; Dispersal; Extinct birds; Oriolidae; Osteology; Turnagra

Indexed keywords

AVIAN PROTEIN;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CLASSIFICATION; GENETICS; HISTOLOGY; MITOCHONDRIAL GENE; MULTILOCUS SEQUENCE TYPING; NEW ZEALAND; PHYLOGENY; SONGBIRD; SPECIES EXTINCTION; STATISTICAL MODEL;

ANIMALS; AVIAN PROTEINS; BAYES THEOREM; EXTINCTION, BIOLOGICAL; GENES, MITOCHONDRIAL; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MULTILOCUS SEQUENCE TYPING; NEW ZEALAND; PASSERIFORMES; PHYLOGENY;

AVES; CORVINAE; CORVOIDEA; CRACTICIDAE; PACHYCEPHALIDAE; PASSERIFORMES; PTILONORHYNCHIDAE; TURDIDAE; TURNAGRA; TURNAGRA CAPENSIS;

EID: 83655203429     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.10.013     Document Type: Article

References (102)

1. Allen E.S., Omland K.E. Novel intron phylogeny (ODC) supports plumage convergence in orioles (Icterus). Auk 2003, 120:961-969.
2. Alström P., Ericson P.G.P., Olsson U., Sundberg P. Phylogeny and classification of the avian superfamily Sylvioidea, based on nuclear and mitochondrial sequence data. Mol. Phylogenet. Evol. 2006, 41:381-397.
3. Alström P., Fregin S., Norman J.A., Ericson P.G.P., Christidis L., Olsson U. Multilocus analysis of a taxonomically densely sampled dataset reveal extensive non-monophyly in the avian family Locustellidae. Mol. Phylogenet. Evol. 2011, 58:513-526.
4. Barker K.F., Barrowclough G.F., Groth J.G. A phylogenetic analysis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data. Proc. Roy. Soc. Lond. B 2002, 269:295-305.
5. Barker F.K., Cibois A., Schikler P., Feinstein J., Cracraft J. Phylogeny and diversification of the largest avian radiation. Proc. Natl. Acad. Sci. USA 2004, 101:11040-11045.
6. Bock W.J. The palatine process of the premaxilla in the Passeres. Bull. Mus. Comp. Zool. 1960, 122:361-488.
7. Buller W.L. On some new species of New Zealand birds. Ibis Ser. 1869, 2(5):37-42.
8. Buller W.L. A History of the Birds of New Zealand, vol. 1 1887, The Author, London.
9. Chesser R.T. Molecular systematics of the rhinocryptid genus Pteroptochos. Condor 1999, 101:439-446.
10. Christidis L., Leeton P.R., Westerman M. Were bowerbirds part of the New Zealand fauna?. Proc. Natl. Acad. Sci. USA 1996, 93:3898-3901.
11. Christidis L., Norman J.A., Scott I.A.W., Westerman M. Molecular perspectives on the phylogenetic affinities of lyrebirds (Menuridae) and treecreepers (Climacteridae). Australian J. Zool. 1996, 44:215-222.
12. Chubb A.L. New nuclear evidence for the oldest divergence among neognath birds: the phylogenetic utility of ZENK (i). Mol. Phylogenet. Evol. 2004, 30:140-151.
13. Cibois A., Pasquet E., Schulenberg T.S. Molecular systematics of the Malagasy babblers (Passeriformes: Timaliidae) and warblers (Passeriformes: Sylviidae), based on cytochrome b and 16S rRNA sequences. Mol. Phylogenet. Evol. 1999, 13:581-595.
14. Clench M.H. Body pterylosis of Atrichornis, Menura, the 'Corvid Assemblage' and other possibly related passerines (Aves: Passeriformes). Records Australian Mus. 1985, 37:115-142.
15. Clench M.H. Pterylography of birds-of-paradise and the systematic position of Macgregor's Bird-of-paradise (Macgregoria pulchra). Auk 1992, 109:923-928.
16. Cracraft J., Feinstein J. What is not a bird of paradise? Molecular and morphological evidence places Macgregoria in the Meliphagidae and the Cnemophilinae near the base of the corvoid tree. Proc. Roy. Soc. B 2000, 267:233-241.
17. Handbook of the Birds of the World, Cuckoo-shrikes to Thrushes 2005, vol. 10. Lynx Edicions, Barcelona.
18. Handbook of the Birds of the World, Picathartes to Tits and Chickadees 2007, vol. 12. Lynx Edicions, Barcelona.
19. Handbook of the Birds of the World, Penduline-tits to Shrikes 2008, vol. 13. Lynx Edicions, Barcelona.
20. Handbook of the Birds of the World, Bush-shrikes to Old World Sparrows 2009, vol. 14. Lynx Edicions, Barcelona.
21. The Howard and Moore Complete Checklist of the Birds of the World 2003, Princeton University Press, Princeton. 3rd ed. E.C. Dickinson (Ed.).
22. Dor R., Safran R.J., Sheldon F.H., Winkler D.W., Lovette I.J. Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex. Mol. Phylogenet. Evol. 2010, 56:409-418.
23. Driskell A.C., Christidis L. Phylogeny and evolution of the Australo-Papuan honeyeaters (Passeriformes, Meliphagidae). Mol. Phylogenet. Evol. 2004, 31:943-960.
24. Dumbacher J.P., Deiner K., Thompson L., Fleischer R.C. Phylogeny of the avian genus Pitohui and the evolution of toxicity in birds. Mol. Phylogenet. Evol. 2008, 49:774-781.
25. Ericson P.G.P., Johansson U.S. Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data. Mol. Phylogenet. Evol. 2003, 29:126-138.
26. Ericson P.G.P., Christidis L., Cooper A., Irestedt M., Jackson J., Johansson U.S., Norman J.A. A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens. Proc. Roy. Soc. B 2002, 269:235-241.
27. Ericson P.G.P., Christidis L., Irestedt M., Norman J.A. Systematic affinities of the lyrebirds (Passeriformes: Menura), with a novel classification of the major groups of passerine birds. Mol. Phylogenet. Evol. 2002, 25:53-62.
28. Ericson P.G.P., Anderson C.L., Britton T., Elzanowski A., Johansson U.S., Kallersjö M., Ohlson J.I., Parsons T.J., Zuccon D., Mayr G. Diversification of Neoaves: integration of molecular sequence data and fossils. Biol. Lett. 2006, 2:543-547.
29. Ericson P.G.P., Zuccon D., Johansson U.S., Alvarenga H., Prum R.O. Higher-level phylogeny and morphological evolution of tyrant flycatchers, cotingas, manakins, and their allies (Aves: Tyrannida). Mol. Phylogenet. Evol. 2006, 40:471-483.
30. Finsch O. Revision der Vogel Neuseelands. J. Orn. 1872, 20:161-188.
31. Finsch O. Zusatze und Berichtigungen zur Revision der Vogel Neuseelands. J. Orn. 1874, 22:167-224.
32. Fjeldså J., Zuccon D., Irestedt M., Johansson U.S., Ericson P.G.P. Sapayoa aenigma: a New World representative of 'Old World suboscines'. Proc. Roy. Soc. 2003, 270(Suppl.):S238-S241.
33. Fjeldså J., Irestedt M., Ericson P.G.P. Molecular data reveal some major adaptational shifts in the early evolution of the most diverse avian family, the Furnariidae. J. Orn. 2005, 146:1-13.
34. Fjeldså J., Irested M., Ericson P.G.P., Zuccon D. The Cinnamon Ibon Hypocryptadius cinnamomeus is a forest canopy sparrow. Ibis 2010, 152:747-760.
35. Frith C.B., Beehler B.M. The Birds of Paradise 1998, Oxford University Press, Oxford.
36. Frith C.B., Frith D.W. The bowerbirds 2004, Oxford University Press, Oxford.
37. Fuchs J., Bowie R.C.K., Fjeldså J., Pasquet E. Phylogenetic relationships of the African bush-shrikes and helmet-shrikes (Passeriformes: Malaconotidae). Mol. Phylogenet. Evol. 2004, 33:428-439.
38. Fuchs J., Fjeldså J., Pasquet E. An ancient African radiation of corvoid birds (Aves: Passeriformes) detected by mitochondrial and nuclear sequence data. Zool. Scr. 2006, 35:375-385.
39. Fuchs J., Cruaud C., Couloux A., Pasquet E. Complex biogeographic history of the cuckoo-shrikes and allies (Passeriformes: Campephagidae) revealed by mitochondrial and nuclear sequence data. Mol. Phylogenet. Evol. 2007, 44:138-153.
40. Hackett S.J., Kimball R.T., Reddy S., Bowie R.C.K., Braun E.L., Braun M.J., Chojnowski J.L., Cox W.A., Han K.-L., Harshman J., Huddleston C.J., Marks B.D., Miglia K.J., Moore W.S., Sheldon F.H., Steadman D.W., Witt C.C., Yuri T. A phylogenomic study of birds reveals their evolutionary history. Science 2008, 320:1763-1768.
41. Harrison G.L., McLenachan P.A., Phillips M.J., Slack K.E., Cooper A., Penny D. Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous. Mol. Biol. Evol. 2004, 21:974-983.
42. Heather B.D., Robinson H.A. Field Guide to the Birds of New Zealand. Revised edition 2005, Viking Press, Auckland.
43. Handbook of Australian, New Zealand and Antarctic Birds Pardalotes to shrike-thrushes, vol. 6 2002, Oxford University Press, Melbourne. P.J. Higgins, J.M. Peter (Eds.).
44. Handbook of Australian, New Zealand and Antarctic birds: Boatbill to starlings, vol. 7 2006, Oxford University Press, Melbourne. P.J. Higgins, J.M. Peter, S.J. Cowling (Eds.).
45. Huelsenbeck J.P., Ronquist F. MrBayes: Bayesian inference of phylogeny. Biometrics 2001, 17:754-755.
46. Irestedt M., Ohlson J.I. The division of the major songbird radiation into Passerida and "core Corvoidea" (Aves: Passeriformes) - the species tree versus gene trees. Zool. Scr. 2008, 37:305-313.
47. Irestedt M., Fjeldså J., Johansson U.S., Ericson P.G.P. Systematic relationships and biogeography of the tracheophone suboscines (Aves: Passeriformes). Mol. Phylogenet. Evol. 2002, 23:499-512.
48. Irestedt M., Ohlson J.I., Zuccon D., Källersjö M., Ericson P.G.P. Nuclear DNA from old collections of avian study skins reveals the evolutionary history of the Old World suboscines (Aves, Passeriformes). Zool. Scr. 2006, 35:567-580.
49. Irestedt M., Fuchs J., Jønsson K.A., Ohlson J.I., Pasquet E., Ericson P.G.P. The systematic affinity of the enigmatic Lamprolia victoriae (Aves: Passeriformes) - an example of avian dispersal between New Guinea and Fiji over Miocene intermittent land bridges?. Mol. Phylogenet. Evol. 2008, 48:1218-1222.
50. Jenni L., Winkler R. Moult and ageing of European Passerines 1994, Academic Press, London.
51. Johansson U.S., Ericson P.G.P. Molecular support for a sister group relationship between Pici and Galbulae (Piciformes sensu Wetmore 1960). J. Avian Biol. 2003, 34:185-197.
52. Johansson U.S., Fjeldså J., Bowie R.C.K. Phylogenetic relationships within Passerida (Aves: Passeriformes): a review and a new molecular phygeny based on three nuclear intron markers. Mol. Phylogenet. Evol. 2008, 48:858-876.
53. Jønsson K.A., Fjeldså J. A phylogenetic supertree of oscine passerine birds (Aves: Passeri). Zool. Scr. 2006, 35:149-186.
54. Jønsson K.A., Fjeldså J., Ericson P.G.P., Irestedt M. Systematic placement of an enigmatic Southeast Asian taxon Eupetes macrocerus and implications for the biogeography of a main songbird radiation, the Passerida. Biol. Lett. 2007, 3:323-326.
55. Jønsson K.A., Bowie R.C.K., Norman J.A., Christidis L., Fjeldså J. Polyphyletic origin of toxic Pitohui birds suggests widespread occurrence of toxicity in corvoid birds. Biol. Lett. 2008, 4:71-74.
56. Jønsson K.A., Irestedt M., Fuchs J., Ericson P.G.P., Christidis L., Bowie R.C.K., Norman J.A., Pasquet E., Fjeldså J. Explosive Avian Radiations and Multi-directional Dispersal across Wallacea: evidence from the Campephagidae and other Crown Corvida (Aves). Mol. Phylogenet. Evol. 2008, 47:221-236.
57. Jønsson K.A., Bowie R.C.K., Moyle R.G., Christidis L., Norman J.A., Benz B.R., Fjeldså J. Historical biogeography of an Indo-Pacific passerine bird family: Pachycephalidae: different colonization patterns in the Indonesian and Melanesian archipelagos. J. Biogeogr. 2010, 37:245-257.
58. Jønsson K.A., Bowie R.C.K., Moyle R.G., Irestedt M., Christidis L., Norman J.A., Fjeldså J. Phylogeny and biogeography of Oriolidae (Aves: Passeriformes). Ecography 2010, 33:232-241.
59. Lanfear, R., Bromham, L., in press. Estimating phylogenies for species assemblages: A complete phylogeny for the past and present native birds of New Zealand. Mol. Phylogenet. Evol.
60. Mayr E. Genus Incertae Sedis. Chech-List of the Birds of the World 1967, vol. 12:52. Museum of Comparative Zoology, Cambridge, Mass.
61. Mayr E., Amadon D. A classification of recent birds. Am. Mus. Novitates 1951, 1496:1-42.
62. Mayr G., Manegold A., Johansson U.S. Monophyletic groups within 'higher land birds' - comparison of morphological and molecular data. J. Zool. Syst. Evol. Res. 2003, 41:233-248.
63. McEvey A. Osteological notes on Grallinidae, Cracticidae and Artamidae. Proceedings of the 16th International Ornithological Congress 1976, 150-160. Blackwell Publishing Ltd, Canberra, Australia. H.J. Frith, J.H. Calaby (Eds.).
64. Melo M., O'Ryan C. Genetic differentiation between Príncipe Island and mainland populations of the grey parrot (Psittacus erithacus), and implications for conservation. Mol. Ecol. 2007, 16:1673-1685.
65. Miller H.C., Lambert D.M. A molecular phylogeny of New Zealand's Petroica (Aves: Petroicidae) species based on mitochondrial DNA sequences. Mol. Phylogenet. Evol. 2006, 40:844-855.
66. Moyle R.G., Filardi C.E., Smith C.E., Diamond J. Explosive Pleistocene diversification and hemispheric expansion of a "great speciator" Proc. Natl. Acad. Sci. USA 2009, 106:1863-1868.
67. Newton I. Speciation and Biogeography of Birds 2003, Academic Press, London.
68. Norman J.A., Ericson P.G.P., Jønsson K.A., Fjeldså J., Christidis L. A multigene phylogeny reveals novel relationships for aberrant genera of Australo-Papuan core Corvoidea and polyphyly of the Pachycephalidae and Psophodidae (Aves: Passeriformes). Mol. Phylogenet. Evol. 2009, 52:488-497.
69. North, A.J., 1901-1904. Nests and Eggs of Birds Found Breeding in Australia and Tasmania, vol. I. Trustees of the Australian Museum, Sydney.
70. Nylander, J.A.A., 2004. MrModeltest v.2.2. [Program distributed by the author]. Uppsala University, Uppsala: Department of Systematic Zoology. http://www.abc.se/~nylander/.
71. Nylander J.A.A., Wilgenbush J.C., Warren D.L., Swofford D.L. AWTY (Are We There Yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 2008, 24:581-583.
72. OSNZ New Zealand Birds 1953, AH AW Reed, Wellington.
73. OSNZ Annotated Checklist of New Zealand Birds 1970, AH & AW Reed, Wellington.
74. OSNZ Checklist of the Birds of New Zealand, Norfolk and Macquarie Islands, and the Ross Dependency, Antarctica 2010, Te Papa Press, Wellington. fourth ed.
75. Oliver W.R.B. New Zealand Birds 1930, Fine Arts Ltd, Wellington.
76. Oliver W.R.B. Avian evolution in New Zealand and Australia. Part II. Emu 1945, 45:119-152.
77. Oliver W.R.B. New Zealand Birds 1955, AH AW Reed, Wellington. third ed.
78. Olson S.L., Parkes K.C., Clench M.H., Borecky S.R. The affinities of the New Zealand passerine genus Turnagra. Notornis 1983, 30:319-336.
79. Pratt H.D. The Hawaiian Honeycreepers 2005, Oxford University Press, Oxford.
80. Remsen J.V. The "Coerebidae": a polyphyletic taxon that dramatizes historical over-emphasis on bill shape as a taxonomic character. J. Avian Biol. 2003, 34:321-323.
81. Ribas C.C., Joseph L., Myiaki C.Y. Molecular systematics and patterns of diversification in Pyrrhura (Psittacidae), with special reference to the picta-leucotis complex. Auk 2006, 123:660-680.
82. Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
83. Schodde R., Mason I.J. The Directory of Australian Birds: Passerines 1999, CSIRO Publishing, Collingwood.
84. Sharpe R.B. Catalogue of the Passeriformes or Perching Birds in the Collections of the British Museum, vol. 7 1883, Trustees of the British Museum, London.
85. Sharpe, R.B., 1903. A Hand-list of the Genera and Species of Birds, vol. IV. British Museum (Natural History), London.
86. Shepherd L.D., Lambert D.M. The relationships and origins of the New Zealand wattlebirds (Passeriformes, Callaeatidae) from DNA sequence analyses. Mol. Phylogenet. Evol. 2007, 43:480-492.
87. Shimodaira H., Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 1999, 16:1114-1116.
88. Sorenson M.D., Oneal E., García-Moreno J., Mindell D.P. More taxa, more characters: the hoatzin problem is still unresolved. Mol. Biol. Evol. 2003, 20:1484-1499.
89. Spellman G.M., Cibois A., Moyle R.G., Winker K., Barker F.K. Clarifying the systematics of an enigmatic avian lineage: What is a Bombycillid?. Mol. Phylogenet. Evol. 2008, 49:1036-1040.
90. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
91. Sundevall, C.J., 1872. Methodi naturalis avium disponendarum tentamen. Stockholm.
92. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4 2003, Sinauer Associates, Sunderland, Massachusetts.
93. Tennyson A.J.D., Martinson P. Extinct Birds of New Zealand 2006, Te Papa Press, Wellington.
94. Trewick S.A., Gibb G.C. Vicars, tramps and assembly of the New Zealand avifauna: a review of molecular phylogenetic evidence. Ibis 2010, 152:226-253.
95. Warren B.H., Bermingham E., Prys-Jones R.P., Thebaud C. Immigration, species radiation and extinction in a highly diverse songbird lineage: white-eyes on Indian Ocean islands. Mol. Ecol. 2006, 15:3769-3786.
96. Worthy T.H., Holdaway R.N. Lost world of the Moa: prehistoric life of New Zealand 2002, Indiana University Press, Bloomington, Indiana.
97. Zuccon, D., 2005. A molecular phylogeny of starlings (Aves: Sturnini): evolution, biogeography and diversification in a passerine family. Ph.D. Thesis, Università degli Studi di Torino.
98. Zuccon D., Ericson P.G.P. A multi-gene phylogeny disentangles the chat-flycatcher complex (Aves: Muscicapidae). Zool. Scr. 2010, 39:213-224.
99. Zuccon D., Ericson P.G.P. The Monticola Rock-thrushes: Phylogeny and biogeography revisited. Mol. Phylogenet. Evol. 2010, 55:901-910.
100. Zuccon D., Ericson P.G.P. The phylogenetic position of the Black-collared Bulbul Neolestes torquatus. Ibis 2010, 152:386-392.
101. Zuccon, A., Zuccon, D., 2010. MrEnt v.2.2. Program Distributed by the Authors. http://www.mrent.org.
102. Zuccon D., Cibois A., Pasquet E., Ericson P.G.P. Nuclear and mitochondrial sequence data reveal the major lineages of starlings, mynas and related taxa. Mol. Phylogenet. Evol. 2006, 41:333-344.