Phylogeny and biogeography of Oriolidae (Aves: Passeriformes)

Ecography

Volumn 33, Issue 2, 2010, Pages 232-241

  Jønsson, Knud A ^a,b   Bowie, Rauri C K ^b   Moyle, Robert G ^c   Irestedt, Martin ^d   Christidis, Les ^e,f   Norman, Janette A ^f,g   Fjeldså, Jon ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF KANSAS   (United States)

^d SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^e AUSTRALIAN MUSEUM   (Australia)

^f UNIVERSITY OF MELBOURNE   (Australia)

^g MUSEUM VICTORIA   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

MUSEUM; PASSERINE; PHYLOGENETICS; PHYLOGENY; PHYLOGEOGRAPHY; TAXONOMY;

AFRICA; ASIA; AUSTRALIA; INDONESIA; PACIFIC ISLANDS; PACIFIC OCEAN; PHILIPPINES;

AVES; CORVINAE; GABAZA; PASSERI; PASSERIFORMES;

EID: 78650145372     PISSN: 09067590     EISSN: 16000587     Source Type: Journal    
DOI: 10.1111/j.1600-0587.2010.06167.x     Document Type: Article

References (59)

1. Akaike, H. 1973. Information theory as an extension of the maximum likelihood principle. - In: Petrov, B. N. and Csaki, F. (eds), Second International Symposium on Information Theory. Akademiai Kiado, Budapest, pp. 276-281.
2. Allen, E. S. and Omland, K. E. 2003. Novel intron phylogeny (ODC) supports plumage convergence in orioles (Icterus). - Auk 120: 961-969.
3. Barker, F. K. et al. 2002. A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data. - Proc. R. Soc. B 269: 295-308.
4. Barker, F. K. et al. 2004. Phylogeny and diversification of the largest avian radiation. - Proc. Nat. Acad. Sci. USA 101: 11040-11045.
5. Chesser, R. T. 1999. Molecular systematics of the rhinocryptid genus Pteroptochos. - Condor 101: 439-446.
6. Christidis, L. 1991. Molecular and biochemical evidence for the origins and evolutionary radiations of the Australasian avifauna. - In: Bell, B. D. and Cossee, R. O. (eds), Proceedings of the XXth International Ornithological Congress. Ornithological Congress Trust Board, Wellington, pp. 392-397.
7. Cibois, A. et al. 2007. Uniform phenotype conceals double colonization by reed-warblers of a remote Pacific archipelago. - J. Biogeogr. 34: 1150-1166.
8. Cicero, C. and Johnson, N. K. 2001. Higher level phylogeny of vireos (Aves: Vireonidae) based on sequences of multiple mtDNA genes. - Mol. Phylogenet. Evol. 20: 27-40.
9. Coates, B. J. and Bishop, K. D. 1997. A guide to the birds of Wallacea, Sulawesi, the Moluccas and Lesser Sunda Islands, Indonesia. - Dove Publ., Australia.
10. Diamond, J. M. 1982. Mimicry of friarbirds by orioles. - Auk 99: 187-196.
11. Drummond, A. J. and Rambaut, A. 2007 BEAST v1.4.7. -.
12. Drummond, A. J. et al. 2002. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. - Genetics 161: 1307-1320.
13. Drummond, A. J. et al. 2006. Relaxed phylogenetics and dating with confidence. - PLoS Biol. 4: 88.
14. Edwards, S. V. and Boles, W. E. 2002. Out of Gondwana: the origin of passerine birds. - Trends Ecol. Evol. 17: 347-349.
15. Ericson, P. G. P. et al. 2002. A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens. - Proc. R. Soc. B 269: 235-241.
16. Evans, B. J. et al. 2003. Phylogenetics of fanged frogs: testing biogeographical hypotheses at the interface of the Asian and Australian faunal zones. - Syst. Biol. 52: 794-819.
17. Filardi, C. E. and Moyle, R. G. 2005. Single origin of a pan-Pacific bird group and upstream colonization of Australasia. - Nature 438: 216-219.
18. Fjeldså, J. and Bowie, R. C. K. 2008. New perspectives on Africa's ancient forest avifauna. - Afr. J. Ecol. 46: 235-247.
19. Fjeldså, J. et al. 2003. Sapayoa aenigma: a New World representative of Old World suboscines. - Proc. R. Soc. B (Suppl.) 270: 238-241.
20. Hackett, S. J. 1996. Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). - Mol. Phylogenet. Evol. 5: 368-382.
21. Hall, R. 1998. The plate tectonics of the Cenozoic SE Asia and the distribution of land and sea. - In: Hall, R. and Holloway, J. D. (eds), Biogeography and geological evolution of SE Asia. Backhuys Publ., pp. 133-163.
22. Hall, R. 2002. Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: computer-based reconstructions, model and animations. - J. Asian Earth Sci. 20: 353-431.
23. Heaney, L. R. et al. 2005. The roles of geological history and colonization abilities in genetic differentiation between mammalian populations in the Philippine archipelago. - J. Biogeogr. 32: 229-247.
24. Hisheh, S. et al. 1998. Biogeography of the Indonesian archipelago. Mitochondrial DNA variation in the fruit bat, Eonycteris spelaea. - Biol. J. Linn. Soc. 65: 329-345.
25. Ho, S. Y. W. 2007. Calibrating molecular estimates of substitution rates and divergence times in birds. - J. Avian Biol. 38: 409-414.
26. Holder, M. T. and Lewis, P. O. 2003. Phylogeny estimation: traditional and Bayesian approaches. - Nat. Rev. Genet. 4: 275-284.
27. Huelsenbeck, J. P. and Ronquist, F. 2003. MrBayes: a program for the Bayesian inference of phylogeny. Version 3.1.2. - .
28. Huelsenbeck, J. P. et al. 2001. MrBayes: Bayesian inference of phylogeny. - Bioinformatics 17: 754-755.
29. Irestedt, M. et al. 2006. Nuclear DNA from old collections of avian study skins reveals the evolutionary history of the Old World suboscines (Aves, Passeriformes). - Zool. Script. 35: 567-580.
30. Irestedt, M. et al. 2009. An unexpectedly long history of sexual selection in birds-of-paradise. - BMC Biol. 9: 235.
31. Jansa, S. A. et al. 2006. The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences. - Syst. Biol. 55: 73-88.
32. Jønsson, K. A. and Fjeldså, J. 2006. Determining biogeographic patterns of dispersal and diversification in oscine passerine birds in Australia, southeast Asia and Africa. - J. Biogeogr. 33: 1155-1165.
33. Jønsson, K. A. et al. 2008a. Explosive avian radiations and multidirectional dispersal across Wallacea: evidence from the Campephagidae and other crown Corvida (Aves). - Mol. Phylogenet. Evol. 47: 221-236.
34. Jønsson, K. A. et al. 2008b. Polyphyletic origin of toxic pitohui birds suggests widespread occurrence of toxicity in corvoid birds. - Biol. Lett. 4: 71-74.
35. Jønsson, K. A. et al. 2008c. Molecular phylogenetics and diversification within one of the most geographically variable bird species complexes (Pachycephala pectoralis/melanura). - J. Avian Biol. 39: 473-478.
36. Jønsson, K. A. et al. 2010. Historical biogeography of an IndoPacific passerine bird family: Pachycephalidae: different colonization patterns in the Indonesian and Melanesian archipelagos. - J. Biogeogr. 37: 245-257.
37. MacKinnon, J. and Phillipps, K. 1993. A field guide to the birds of Borneo, Sumatra, Java and Bali. - Oxford Univ. Press.
38. Metcalve, I. 1998. Palaeozoic and Mesozoic geological evolution of the SE Asian region: multidisciplinary constramits and implications for biogeography. - In: Hall, R. and Holloway, J. D. (eds), Biogeography and geological evolution of SE Asia. Backhuys Publ., pp. 25-41.
39. Michaux, B. 1998. Terrestrial birds in the Indo-Pacific. - In: Hall, R. and Holloway, J. D. (eds), Biogeography and geological evolution of SE Asia. Backhuys Publ., pp. 361-391.
40. Monroe, B. L. and Sibley, C. G. 1993. A world checklist of birds. - Yale Univ. Press.
41. Moyle, R. G. et al. 2009. Explosive Pleistocene diversification and hemispheric expansion of a "great speciator". - Proc. Nat. Acad. Sci. USA 106: 1863-1868.
42. Nguembock, B. et al. 2008. Phylogeny of Laniarius: molecular data reveal L. liberatus synonymous with L. erlangeri and "plumage coloration" as unreliable morphological characters for defining species and species groups. - Mol. Phylogenet. Evol. 48: 396-407.
43. Norman, J. A. et al. 2007. Speciation dynamics in the Australo-Papuan Meliphaga honeyeaters. - Mol. Phylogenet. Evol. 42: 80-91.
44. Norman, J. A. et al. 2009. A multigene phylogeny reveals novel relationships for aberrant genera of Australo-Papuan core Corvoidea (Aves: Passeriformes) and polyphyly of the Pachycephalidae and Psophodidae. - Mol. Phylogenet. Evol. 52: 488-497.
45. Nylander, J. A. A. 2004. MrModeltest2. - .
46. Nylander, J. A. A. et al. 2008. AWTY (are we there yet): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. - Bioinformatics 24: 581-583.
47. Posada, D. and Buckley, T. R. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. - Syst. Biol. 53: 793-808.
48. Rambaut, A. and Drummond, A. J. 2007. Tracer v1.4. - .
49. Ronquist, F. 1996. DIVA version 1.1. Computer program and manual. - .
50. Ronquist, F. 1997. Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. - Syst. Biol. 46: 195-203.
51. Ronquist, F. and Huelsenbeck, J. P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. - Bioinformatics 19: 1572-1574.
52. Sanmartín, I. 2003. Dispersal vs. vicariance in the Mediterranean: historical biogeography of the Palearctic Pachydeminae (Coleoptera, Scarabaeoidea). - J. Biogeogr. 30: 1883-1897.
53. Steppan, S. J. et al. 2003. Molecular phylogeny of the endemic rodent Apomys (Muridae) and the dynamics of diversification in an oceanic archipelago. - Biol. J. Linn. Soc. 80: 699-715.
54. Wallace, A. R. 1860. On the zoological geography of the Malay Archipelago. - J. Linn. Soc. Lond. IV: 172-184.
55. Wallace, A. R. 1863. On the physical geography of the Malay Archipelago. - J. Roy. Geogr. Soc. 217-234.
56. Walter, B. A. and Jones, P. J. 2008. Family oriolidae (orioles). - In: in Del Hoyo, J. et al. (eds), Handbook of the birds of the world Vol. 13. Penduline-tits to shrikes. Lynx Edicions, pp. 692-731.
57. Wilgenbusch, J. C. et al. 2004. AWTY: a system for graphical exploration of MCMC convergence in Bayesian phylogenetic inference. - .
58. Williams, P. H. 1996. WORLDMAP 4 WINDOWS: software and help document 4.1. - Privately distributed, London, UK.
59. Zwickl, D. J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. - Ph.D. thesis, The Univ. of Texas at Austin, USA.