-
1
-
-
0000501656
-
Information theory as an extension of the maximum likelihood principle
-
In. Petrov B.N. Csaki F. (Eds). pp.). Budapest: Akademiai Kiado.
-
Akaike, H. (1973). Information theory as an extension of the maximum likelihood principle. In B. N. Petrov F. Csaki (Eds) Second International Symposium on Information Theory (pp. 267 281). Budapest: Akademiai Kiado.
-
(1973)
Second International Symposium on Information Theory
, pp. 267-281
-
-
Akaike, H.1
-
2
-
-
0242569265
-
Novel intron phylogeny (ODC) supports plumage convergence in orioles (Icterus
-
Allen, E. S. Omland, K. E. (2003). Novel intron phylogeny (ODC) supports plumage convergence in orioles (Icterus). The Auk, 120, 961 969.
-
(2003)
The Auk
, vol.120
, pp. 961-969
-
-
Allen, E.S.1
Omland, K.E.2
-
3
-
-
12444347594
-
Incongruence between mitochondrial DNA, nuclear DNA and non-molecular data in the avian genus Motacilla: Implications for estimates of species phylogenies
-
In. Alström P. (Ed.). PhD Thesis. Uppsala University.
-
Alström, P. Ödeen, A. (2002). Incongruence between mitochondrial DNA, nuclear DNA and non-molecular data in the avian genus Motacilla: implications for estimates of species phylogenies. In P. Alström (Ed.) Species Limits and Systematics in Some Passerine Birds. PhD Thesis. Uppsala University.
-
(2002)
Species Limits and Systematics in Some Passerine Birds.
-
-
Alström, P.1
Ödeen, A.2
-
5
-
-
0842347322
-
A phylogenetic analysis for passerine birds: Taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data
-
Barker, K. F., Barrowclough, G. F. Groth, J. G. (2002). A phylogenetic analysis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data. Proceedings of the Royal Society of London B, 269, 295 305.
-
(2002)
Proceedings of the Royal Society of London B
, vol.269
, pp. 295-305
-
-
Barker, K.F.1
Barrowclough, G.F.2
Groth, J.G.3
-
6
-
-
3342978151
-
Phylogeny and diversification of the largest avian radiation
-
Barker, F. K., Cibois, A., Schikler, P. A., Feinstein, J. Cracraft, J. (2004). Phylogeny and diversification of the largest avian radiation. Proceedings of the National Academy of Sciences of the USA, 101, 11040 11045.
-
(2004)
Proceedings of the National Academy of Sciences of the USA
, vol.101
, pp. 11040-11045
-
-
Barker, F.K.1
Cibois, A.2
Schikler, P.A.3
Feinstein, J.4
Cracraft, J.5
-
7
-
-
0001160784
-
A phylogeny of oscines
-
Beecher, W. J. (1953). A phylogeny of oscines. The Auk, 70, 270 333.
-
(1953)
The Auk
, vol.70
, pp. 270-333
-
-
Beecher, W.J.1
-
8
-
-
37849053471
-
Estimating divergence times in large phylogenetic trees
-
Britton, T., Anderson, C. L., Jacquet, D., Lundqvist, S. Bremer, K. (2007). Estimating divergence times in large phylogenetic trees. Systematic Biology, 56, 741 752.
-
(2007)
Systematic Biology
, vol.56
, pp. 741-752
-
-
Britton, T.1
Anderson, C.L.2
Jacquet, D.3
Lundqvist, S.4
Bremer, K.5
-
9
-
-
0002778664
-
DNA hybridization and avian phylogenetics
-
Cracraft, J. (1987). DNA hybridization and avian phylogenetics. Evolutionary Biology, 21, 47 96.
-
(1987)
Evolutionary Biology
, vol.21
, pp. 47-96
-
-
Cracraft, J.1
-
10
-
-
0030816742
-
Can three incongruence tests predict when data should be combined?
-
Cunningham, C. W. (1997). Can three incongruence tests predict when data should be combined? Molecular Biology and Evolution, 14, 733 740.
-
(1997)
Molecular Biology and Evolution
, vol.14
, pp. 733-740
-
-
Cunningham, C.W.1
-
11
-
-
33847461822
-
The perils of single gene trees - Mitochondrial versus single-copy nuclear DNA variation in white-eyes (Aves: Zosteropidae)
-
Degnan, S. M. (1993). The perils of single gene trees - mitochondrial versus single-copy nuclear DNA variation in white-eyes (Aves: Zosteropidae). Molecular Ecology, 2, 219 225.
-
(1993)
Molecular Ecology
, vol.2
, pp. 219-225
-
-
Degnan, S.M.1
-
12
-
-
34347256397
-
High-resolution species trees without concatenation
-
Edwards, S. V., Liu, L. Pearl, D. K. (2007). High-resolution species trees without concatenation. Proceedings of the National Academy of Sciences of the USA, 104, 5936 5941.
-
(2007)
Proceedings of the National Academy of Sciences of the USA
, vol.104
, pp. 5936-5941
-
-
Edwards, S.V.1
Liu, L.2
Pearl, D.K.3
-
13
-
-
0242505896
-
Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data
-
Ericson, P. G. P. Johansson, U.S. (2003). Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data. Molecular Phylogenetics and Evolution, 29, 126 138.
-
(2003)
Molecular Phylogenetics and Evolution
, vol.29
, pp. 126-138
-
-
Ericson, P.G.P.1
Johansson, U.S.2
-
14
-
-
0033794386
-
Major divisions of oscines revealed by insertions in the nuclear gene c-myc: A novel gene in avian phylogenetics
-
Ericson, P. G. P., Johansson, U.S. Parsons, T. J. (2000). Major divisions of oscines revealed by insertions in the nuclear gene c-myc: a novel gene in avian phylogenetics. The Auk, 117, 1077 1086.
-
(2000)
The Auk
, vol.117
, pp. 1077-1086
-
-
Ericson, P.G.P.1
Johansson, U.S.2
Parsons, T.J.3
-
15
-
-
53149138969
-
A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens
-
Ericson, P. G. P., Christidis, L., Cooper, A., Irestedt, M., Jackson, J., Johansson, U.S. Norman, J. A. (2002a). A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrens. Proceedings of the Royal Society of London B, 269, 235 241.
-
(2002)
Proceedings of the Royal Society of London B
, vol.269
, pp. 235-241
-
-
Ericson, P.G.P.1
Christidis, L.2
Cooper, A.3
Irestedt, M.4
Jackson, J.5
Johansson, U.S.6
Norman, J.A.7
-
16
-
-
0036395706
-
Systematic affinities of the lyrebirds (Passeriformes: Menura), with a novel classification of the major groups of passerine birds
-
Ericson, P. G. P., Christidis, L., Irestedt, M. Norman, J. A. (2002b). Systematic affinities of the lyrebirds (Passeriformes: Menura), with a novel classification of the major groups of passerine birds. Molecular Phylogenetics and Evolution, 25, 53 62.
-
(2002)
Molecular Phylogenetics and Evolution
, vol.25
, pp. 53-62
-
-
Ericson, P.G.P.1
Christidis, L.2
Irestedt, M.3
Norman, J.A.4
-
17
-
-
0242407073
-
Sapayoa aenigma: A New World representative of 'Old World suboscines'
-
Fjeldså, J., Zuccon, D., Irestedt, M., Johansson, U.S. Ericson, P. G. P. (2003). Sapayoa aenigma: a New World representative of 'Old World suboscines'. Proceedings of the Royal Society of London B, 270, 238 241.
-
(2003)
Proceedings of the Royal Society of London B
, vol.270
, pp. 238-241
-
-
Fjeldså, J.1
Zuccon, D.2
Irestedt, M.3
Johansson, U.S.4
Ericson, P.G.P.5
-
18
-
-
12444303315
-
Molecular data reveal some major adaptational shifts in the early evolution of the most diverse avian family, the Furnariidae
-
Fjeldså, J., Irestedt, M. Ericson, P. G. P. (2005). Molecular data reveal some major adaptational shifts in the early evolution of the most diverse avian family, the Furnariidae. Journal of Ornithology, 146, 1 13.
-
(2005)
Journal of Ornithology
, vol.146
, pp. 1-13
-
-
Fjeldså, J.1
Irestedt, M.2
Ericson, P.G.P.3
-
19
-
-
33745108958
-
An ancient African radiation of corvoid birds (Aves: Passeriformes) detected by mitochondrial and nuclear sequence data
-
Fuchs, J., Fjeldså, J. Pasquet, E. (2006). An ancient African radiation of corvoid birds (Aves: Passeriformes) detected by mitochondrial and nuclear sequence data. Zoologica Scripta, 35, 375 385.
-
(2006)
Zoologica Scripta
, vol.35
, pp. 375-385
-
-
Fuchs, J.1
Fjeldså, J.2
Pasquet, E.3
-
20
-
-
1642554676
-
Reading the entrails of chickens: Molecular timescales of evolution and the illusion of precision
-
Graur, D. Martin, W. (2004). Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision. Trends in Genetics, 20, 80 86.
-
(2004)
Trends in Genetics
, vol.20
, pp. 80-86
-
-
Graur, D.1
Martin, W.2
-
21
-
-
0032025857
-
Is it better to add taxa or characters to a difficult phylogenetic problem?
-
Graybeal, A. (1998). Is it better to add taxa or characters to a difficult phylogenetic problem? Systematic Biology, 47, 9 17.
-
(1998)
Systematic Biology
, vol.47
, pp. 9-17
-
-
Graybeal, A.1
-
22
-
-
0001660330
-
Reweaving the tapestry: What can we learn from Sibley & Ahlquist (1990)?
-
Harshman, J. (1994). Reweaving the tapestry: what can we learn from Sibley & Ahlquist (1990)? The Auk, 111, 377 388.
-
(1994)
The Auk
, vol.111
, pp. 377-388
-
-
Harshman, J.1
-
23
-
-
33747339757
-
Resolution of phylogenetic conflict in large data sets by increased taxon sampling
-
Hedtke, S. M., Townsend, T. M. Hillis, D. M. (2006). Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Systematic Biology, 55, 522 529.
-
(2006)
Systematic Biology
, vol.55
, pp. 522-529
-
-
Hedtke, S.M.1
Townsend, T.M.2
Hillis, D.M.3
-
24
-
-
0037379673
-
Phylogeny estimation: Traditional and Bayesian approaches
-
Holder, M. Lewis, P. O. (2003). Phylogeny estimation: traditional and Bayesian approaches. Nature Genetics, 4, 275 284.
-
(2003)
Nature Genetics
, vol.4
, pp. 275-284
-
-
Holder, M.1
Lewis, P.O.2
-
25
-
-
0002254210
-
Critical evaluation of DNA hybridization studies in avian systematics
-
Houde, P. (1987). Critical evaluation of DNA hybridization studies in avian systematics. The Auk, 104, 17 32.
-
(1987)
The Auk
, vol.104
, pp. 17-32
-
-
Houde, P.1
-
26
-
-
11944268967
-
Performance of phylogenetic methods in simulation
-
Huelsenbeck, J. P. (1994). Performance of phylogenetic methods in simulation. Systematic Biology, 44, 17 48.
-
(1994)
Systematic Biology
, vol.44
, pp. 17-48
-
-
Huelsenbeck, J.P.1
-
27
-
-
13444256676
-
Reverend Bayes meets Darwin: Bayesian inference of phylogeny and its impact on evolutionary biology
-
Huelsenbeck, J. P., Ronquist, F., Nielsen, R. Bollback, J. P. (2001). Reverend Bayes meets Darwin: Bayesian inference of phylogeny and its impact on evolutionary biology. Science, 288, 2349 2350.
-
(2001)
Science
, vol.288
, pp. 2349-2350
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
Nielsen, R.3
Bollback, J.P.4
-
28
-
-
0035064818
-
Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data
-
Irestedt, M., Johansson, U.S., Parsons, T. J. Ericson, P. G. P. (2001). Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data. Journal of Avian Biology, 32, 15 25.
-
(2001)
Journal of Avian Biology
, vol.32
, pp. 15-25
-
-
Irestedt, M.1
Johansson, U.S.2
Parsons, T.J.3
Ericson, P.G.P.4
-
29
-
-
0036019707
-
Systematic relationships and biogeography of the tracheophone suboscines (Aves: Passeriformes)
-
Irestedt, M., Fjeldså, J., Johansson, U.S. Ericson, P. G. P. (2002). Systematic relationships and biogeography of the tracheophone suboscines (Aves: Passeriformes). Molecular Phylogenetics and Evolution, 23, 499 512.
-
(2002)
Molecular Phylogenetics and Evolution
, vol.23
, pp. 499-512
-
-
Irestedt, M.1
Fjeldså, J.2
Johansson, U.S.3
Ericson, P.G.P.4
-
30
-
-
12444257534
-
Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors
-
Irestedt, M., Fjeldså, J., Nylander, J. A. A. Ericson, P. G. P. (2004). Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors. BMC Evolutionary Biology, 4, 23.
-
(2004)
BMC Evolutionary Biology
, vol.4
, pp. 23
-
-
Irestedt, M.1
Fjeldså, J.2
Nylander, J.A.A.3
Ericson, P.G.P.4
-
31
-
-
33750345888
-
Nuclear DNA from old collections of avian study skins reveals the evolutionary history of the Old World suboscines (Aves, Passeriformes)
-
Irestedt, M., Ohlson, J. I., Zuccon, D., Källersjö, M. Ericson, P. G. P. (2006). Nuclear DNA from old collections of avian study skins reveals the evolutionary history of the Old World suboscines (Aves, Passeriformes). Zoologica Scripta, 35, 567 580.
-
(2006)
Zoologica Scripta
, vol.35
, pp. 567-580
-
-
Irestedt, M.1
Ohlson, J.I.2
Zuccon, D.3
Källersjö, M.4
Ericson, P.G.P.5
-
32
-
-
38449099455
-
Systematic placement of the enigmatic Eupetes macrocerus and implications for the biogeography of a main songbird radiation, the Passerida
-
Jønsson, K. A., Fjeldså, J., Ericson, P. G. P. Irestedt, M. (2007). Systematic placement of the enigmatic Eupetes macrocerus and implications for the biogeography of a main songbird radiation, the Passerida. Biology Letters, 3, 323 326.
-
(2007)
Biology Letters
, vol.3
, pp. 323-326
-
-
Jønsson, K.A.1
Fjeldså, J.2
Ericson, P.G.P.3
Irestedt, M.4
-
33
-
-
33847302458
-
Inconsistency of phylogenetic estimates from concatenated data under coalescence
-
Kubatko, L. S. Degnan, J. H. (2007). Inconsistency of phylogenetic estimates from concatenated data under coalescence. Systematic Biology, 56, 17 24.
-
(2007)
Systematic Biology
, vol.56
, pp. 17-24
-
-
Kubatko, L.S.1
Degnan, J.H.2
-
34
-
-
0031504952
-
Gene trees in species trees
-
Maddison, W. (1997). Gene trees in species trees. Systematic Biology, 46, 523 536.
-
(1997)
Systematic Biology
, vol.46
, pp. 523-536
-
-
Maddison, W.1
-
36
-
-
0347724024
-
Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data
-
Moyle, R. G. (2004). Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution, 30, 187 200.
-
(2004)
Molecular Phylogenetics and Evolution
, vol.30
, pp. 187-200
-
-
Moyle, R.G.1
-
37
-
-
33847338861
-
-
[Program distributed by the author]. Uppsala University, Uppsala: Department of Systematic Zoology.
-
Nylander, J. A. A. (2005). Mrmodeltest v.2.2. [Program distributed by the author]. Uppsala University, Uppsala: Department of Systematic Zoology.
-
(2005)
Mrmodeltest v.2.2.
-
-
Nylander, J.A.A.1
-
38
-
-
33750562341
-
Application of molecular clocks in ornithology revisited
-
Peterson, A. T. (2006). Application of molecular clocks in ornithology revisited. Journal of Avian Biology, 37, 541 544.
-
(2006)
Journal of Avian Biology
, vol.37
, pp. 541-544
-
-
Peterson, A.T.1
-
39
-
-
0001857248
-
Appendicular myology and relationships of the New World nine-primaried oscines (Aves: Passeriformes)
-
Raikow, R. J. (1978). Appendicular myology and relationships of the New World nine-primaried oscines (Aves: Passeriformes). Bulletin of the Carnegie Museum of Natural History, 7, 1 43.
-
(1978)
Bulletin of the Carnegie Museum of Natural History
, vol.7
, pp. 1-43
-
-
Raikow, R.J.1
-
40
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas, A., Williams, B. L., King, N. Carroll, S. B. (2003). Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature, 23, 798 803.
-
(2003)
Nature
, vol.23
, pp. 798-803
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
41
-
-
0041386108
-
Mrbayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F. Huelsenbeck, J. P. (2003). mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
43
-
-
0039466725
-
Combining data with different distributions of among-site rate variation
-
Sullivan, J. (1996). Combining data with different distributions of among-site rate variation. Systematic Biology, 45, 375 380.
-
(1996)
Systematic Biology
, vol.45
, pp. 375-380
-
-
Sullivan, J.1
|