-
2
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
Arava Y., Wang Y., Storey J.D., Liu C.L., Brown P.O., Herschlag D. Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 2003, 100:3889-3894.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3889-3894
-
-
Arava, Y.1
Wang, Y.2
Storey, J.D.3
Liu, C.L.4
Brown, P.O.5
Herschlag, D.6
-
3
-
-
0034100041
-
Glucose depletion rapidly inhibits translation initiation in yeast
-
Ashe M.P., De Long S.K., Sachs A.B. Glucose depletion rapidly inhibits translation initiation in yeast. Mol. Biol. Cell 2000, 11:833-848.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 833-848
-
-
Ashe, M.P.1
De Long, S.K.2
Sachs, A.B.3
-
4
-
-
34250895717
-
Widespread use of poly(A) tail length control to accentuate expression of the yeast transcriptome
-
Beilharz T.H., Preiss T. Widespread use of poly(A) tail length control to accentuate expression of the yeast transcriptome. RNA 2007, 13:982-997.
-
(2007)
RNA
, vol.13
, pp. 982-997
-
-
Beilharz, T.H.1
Preiss, T.2
-
5
-
-
0242416539
-
Noise in eukaryotic gene expression
-
Blake W.J., KAErn M., Cantor C.R., Collins J.J. Noise in eukaryotic gene expression. Nature 2003, 422:633-637.
-
(2003)
Nature
, vol.422
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
6
-
-
34347387606
-
Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae
-
Brengues M., Parker R. Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae. Mol. Biol. Cell 2007, 18:2592-2602.
-
(2007)
Mol. Biol. Cell
, vol.18
, pp. 2592-2602
-
-
Brengues, M.1
Parker, R.2
-
7
-
-
27144515901
-
Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies
-
Brengues M., Teixeira D., Parker R. Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 2005, 310:486-489.
-
(2005)
Science
, vol.310
, pp. 486-489
-
-
Brengues, M.1
Teixeira, D.2
Parker, R.3
-
8
-
-
77949353765
-
Functional overlap between eIF4G isoforms in Saccharomyces cerevisiae
-
Clarkson B.K., Gilbert W.V., Doudna J.A. Functional overlap between eIF4G isoforms in Saccharomyces cerevisiae. PLoS ONE 2010, 5:e9114.
-
(2010)
PLoS ONE
, vol.5
-
-
Clarkson, B.K.1
Gilbert, W.V.2
Doudna, J.A.3
-
10
-
-
25144482816
-
General translational repression by activators of mRNA decapping
-
Coller J., Parker R. General translational repression by activators of mRNA decapping. Cell 2005, 122:875-886.
-
(2005)
Cell
, vol.122
, pp. 875-886
-
-
Coller, J.1
Parker, R.2
-
11
-
-
0034610273
-
Glucose depletion causes haploid invasive growth in yeast
-
Cullen P.J., Sprague G.F. Glucose depletion causes haploid invasive growth in yeast. Proc. Natl. Acad. Sci. USA 2000, 97:13619-13624.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 13619-13624
-
-
Cullen, P.J.1
Sprague, G.F.2
-
12
-
-
73549098882
-
Tom20 mediates localization of mRNAs to mitochondria in a translation-dependent manner
-
Eliyahu E., Pnueli L., Melamed D., Scherrer T., Gerber A.P., Pines O., Rapaport D., Arava Y. Tom20 mediates localization of mRNAs to mitochondria in a translation-dependent manner. Mol. Cell. Biol. 2010, 30:284-294.
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 284-294
-
-
Eliyahu, E.1
Pnueli, L.2
Melamed, D.3
Scherrer, T.4
Gerber, A.P.5
Pines, O.6
Rapaport, D.7
Arava, Y.8
-
13
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch A.P., Spellman P.T., Kao C.M., Carmel-Harel O., Eisen M.B., Storz G., Botstein D., Brown P.O. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 2000, 11:4241-4257.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
14
-
-
2942561052
-
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
-
Grigull J., Mnaimneh S., Pootoolal J., Robinson M.D., Hughes T.R. Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol. Cell. Biol. 2004, 24:5534-5547.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 5534-5547
-
-
Grigull, J.1
Mnaimneh, S.2
Pootoolal, J.3
Robinson, M.D.4
Hughes, T.R.5
-
15
-
-
32544453888
-
TOPs and their regulation
-
Hamilton T.L., Stoneley M., Spriggs K.A., Bushell M. TOPs and their regulation. Biochem. Soc. Trans. 2006, 34:12-16.
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 12-16
-
-
Hamilton, T.L.1
Stoneley, M.2
Spriggs, K.A.3
Bushell, M.4
-
16
-
-
33749244908
-
Translation-independent inhibition of mRNA deadenylation during stress in Saccharomyces cerevisiae
-
Hilgers V., Teixeira D., Parker R. Translation-independent inhibition of mRNA deadenylation during stress in Saccharomyces cerevisiae. RNA 2006, 12:1835-1845.
-
(2006)
RNA
, vol.12
, pp. 1835-1845
-
-
Hilgers, V.1
Teixeira, D.2
Parker, R.3
-
17
-
-
54949148332
-
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
-
Hogan D.J., Riordan D.P., Gerber A.P., Herschlag D., Brown P.O. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 2008, 6:e255.
-
(2008)
PLoS Biol.
, vol.6
-
-
Hogan, D.J.1
Riordan, D.P.2
Gerber, A.P.3
Herschlag, D.4
Brown, P.O.5
-
18
-
-
1642363230
-
Loss of translational control in yeast compromised for the major mRNA decay pathway
-
Holmes L.E., Campbell S.G., De Long S.K., Sachs A.B., Ashe M.P. Loss of translational control in yeast compromised for the major mRNA decay pathway. Mol. Cell. Biol. 2004, 24:2998-3010.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 2998-3010
-
-
Holmes, L.E.1
Campbell, S.G.2
De Long, S.K.3
Sachs, A.B.4
Ashe, M.P.5
-
19
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
Holstege F.C., Jennings E.G., Wyrick J.J., Lee T.I., Hengartner C.J., Green M.R., Golub T.R., Lander E.S., Young R.A. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 1998, 95:717-728.
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
Green, M.R.6
Golub, T.R.7
Lander, E.S.8
Young, R.A.9
-
20
-
-
35348989809
-
Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies
-
Hoyle N.P., Castelli L.M., Campbell S.G., Holmes L.E., Ashe M.P. Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies. J. Cell Biol. 2007, 179:65-74.
-
(2007)
J. Cell Biol.
, vol.179
, pp. 65-74
-
-
Hoyle, N.P.1
Castelli, L.M.2
Campbell, S.G.3
Holmes, L.E.4
Ashe, M.P.5
-
21
-
-
70249141564
-
Co-translational mRNA decay in Saccharomyces cerevisiae
-
Hu W., Sweet T.J., Chamnongpol S., Baker K.E., Coller J. Co-translational mRNA decay in Saccharomyces cerevisiae. Nature 2009, 461:225-229.
-
(2009)
Nature
, vol.461
, pp. 225-229
-
-
Hu, W.1
Sweet, T.J.2
Chamnongpol, S.3
Baker, K.E.4
Coller, J.5
-
22
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia N.T., Ghaemmaghami S., Newman J.R., Weissman J.S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 2009, 324:218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
23
-
-
0035674402
-
Translational regulation and RNA localization in Drosophila oocytes and embryos
-
Johnstone O., Lasko P. Translational regulation and RNA localization in Drosophila oocytes and embryos. Annu. Rev. Genet. 2001, 35:365-406.
-
(2001)
Annu. Rev. Genet.
, vol.35
, pp. 365-406
-
-
Johnstone, O.1
Lasko, P.2
-
24
-
-
34250735674
-
RNA regulons: coordination of post-transcriptional events
-
Keene J.D. RNA regulons: coordination of post-transcriptional events. Nat. Rev. Genet. 2007, 8:533-543.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 533-543
-
-
Keene, J.D.1
-
25
-
-
0036289532
-
Eukaryotic mRNPs may represent posttranscriptional operons
-
Keene J.D., Tenenbaum S.A. Eukaryotic mRNPs may represent posttranscriptional operons. Mol. Cell 2002, 9:1161-1167.
-
(2002)
Mol. Cell
, vol.9
, pp. 1161-1167
-
-
Keene, J.D.1
Tenenbaum, S.A.2
-
26
-
-
0035137667
-
Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source
-
Kuhn K.M., DeRisi J.L., Brown P.O., Sarnow P. Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source. Mol. Cell. Biol. 2001, 21:916-927.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 916-927
-
-
Kuhn, K.M.1
DeRisi, J.L.2
Brown, P.O.3
Sarnow, P.4
-
27
-
-
0033055772
-
The cis acting sequences responsible for the differential decay of the unstable MFA2 and stable PGK1 transcripts in yeast include the context of the translational start codon
-
LaGrandeur T., Parker R. The cis acting sequences responsible for the differential decay of the unstable MFA2 and stable PGK1 transcripts in yeast include the context of the translational start codon. RNA 1999, 5:420-433.
-
(1999)
RNA
, vol.5
, pp. 420-433
-
-
LaGrandeur, T.1
Parker, R.2
-
28
-
-
0036200898
-
Genome-wide analysis of mRNAs targeted to yeast mitochondria
-
Marc P., Margeot A., Devaux F., Blugeon C., Corral-Debrinski M., Jacq C. Genome-wide analysis of mRNAs targeted to yeast mitochondria. EMBO Rep. 2002, 3:159-164.
-
(2002)
EMBO Rep.
, vol.3
, pp. 159-164
-
-
Marc, P.1
Margeot, A.2
Devaux, F.3
Blugeon, C.4
Corral-Debrinski, M.5
Jacq, C.6
-
29
-
-
45749090082
-
Yeast translational response to high salinity: global analysis reveals regulation at multiple levels
-
Melamed D., Pnueli L., Arava Y. Yeast translational response to high salinity: global analysis reveals regulation at multiple levels. RNA 2008, 14:1337-1351.
-
(2008)
RNA
, vol.14
, pp. 1337-1351
-
-
Melamed, D.1
Pnueli, L.2
Arava, Y.3
-
30
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Nagalakshmi U., Wang Z., Waern K., Shou C., Raha D., Gerstein M., Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 2008, 320:1344-1349.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
31
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak E.M., Thattai M., Kurtser I., Grossman A.D., van Oudenaarden A. Regulation of noise in the expression of a single gene. Nat. Genet. 2002, 31:69-73.
-
(2002)
Nat. Genet.
, vol.31
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
van Oudenaarden, A.5
-
32
-
-
33847417585
-
P bodies and the control of mRNA translation and degradation
-
Parker R., Sheth U. P bodies and the control of mRNA translation and degradation. Mol. Cell 2007, 25:635-646.
-
(2007)
Mol. Cell
, vol.25
, pp. 635-646
-
-
Parker, R.1
Sheth, U.2
-
33
-
-
0742288008
-
The enzymes and control of eukaryotic mRNA turnover
-
Parker R., Song H. The enzymes and control of eukaryotic mRNA turnover. Nat. Struct. Mol. Biol. 2004, 11:121-127.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 121-127
-
-
Parker, R.1
Song, H.2
-
34
-
-
34247255773
-
Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components
-
Pleiss J.A., Whitworth G.B., Bergkessel M., Guthrie C. Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components. PLoS Biol. 2007, 5:e90.
-
(2007)
PLoS Biol.
, vol.5
-
-
Pleiss, J.A.1
Whitworth, G.B.2
Bergkessel, M.3
Guthrie, C.4
-
35
-
-
0345602742
-
Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock
-
Preiss T., Baron-Benhamou J., Ansorge W., Hentze M.W. Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock. Nat. Struct. Biol. 2003, 10:1039-1047.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 1039-1047
-
-
Preiss, T.1
Baron-Benhamou, J.2
Ansorge, W.3
Hentze, M.W.4
-
36
-
-
25444468618
-
Noise in gene expression: origins, consequences, and control
-
Raser J.M., O'Shea E.K. Noise in gene expression: origins, consequences, and control. Science 2005, 309:2010-2013.
-
(2005)
Science
, vol.309
, pp. 2010-2013
-
-
Raser, J.M.1
O'Shea, E.K.2
-
37
-
-
0026149560
-
Translational control during early development
-
Richter J.D. Translational control during early development. Bioessays 1991, 13:179-183.
-
(1991)
Bioessays
, vol.13
, pp. 179-183
-
-
Richter, J.D.1
-
38
-
-
48449096068
-
Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization
-
Saint-Georges Y., Garcia M., Delaveau T., Jourdren L., Le Crom S., Lemoine S., Tanty V., Devaux F., Jacq C. Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization. PLoS ONE 2008, 3:e2293.
-
(2008)
PLoS ONE
, vol.3
-
-
Saint-Georges, Y.1
Garcia, M.2
Delaveau, T.3
Jourdren, L.4
Le Crom, S.5
Lemoine, S.6
Tanty, V.7
Devaux, F.8
Jacq, C.9
-
39
-
-
0032778953
-
Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae
-
Schwartz D.C., Parker R. Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 1999, 19:5247-5256.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 5247-5256
-
-
Schwartz, D.C.1
Parker, R.2
-
40
-
-
0037968357
-
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
-
Sheth U., Parker R. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 2003, 300:805-808.
-
(2003)
Science
, vol.300
, pp. 805-808
-
-
Sheth, U.1
Parker, R.2
-
41
-
-
27144465421
-
Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways
-
Smirnova J.B., Selley J.N., Sanchez-Cabo F., Carroll K., Eddy A.A., McCarthy J.E., Hubbard S.J., Pavitt G.D., Grant C.M., Ashe M.P. Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways. Mol. Cell. Biol. 2005, 25:9340-9349.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 9340-9349
-
-
Smirnova, J.B.1
Selley, J.N.2
Sanchez-Cabo, F.3
Carroll, K.4
Eddy, A.A.5
McCarthy, J.E.6
Hubbard, S.J.7
Pavitt, G.D.8
Grant, C.M.9
Ashe, M.P.10
-
42
-
-
0038487808
-
Long mRNAs coding for yeast mitochondrial proteins of prokaryotic origin preferentially localize to the vicinity of mitochondria
-
Sylvestre J., Vialette S., Corral Debrinski M., Jacq C. Long mRNAs coding for yeast mitochondrial proteins of prokaryotic origin preferentially localize to the vicinity of mitochondria. Genome Biol. 2003, 4:R44.
-
(2003)
Genome Biol.
, vol.4
-
-
Sylvestre, J.1
Vialette, S.2
Corral Debrinski, M.3
Jacq, C.4
-
43
-
-
15444379718
-
Processing bodies require RNA for assembly and contain nontranslating mRNAs
-
Teixeira D., Sheth U., Valencia-Sanchez M.A., Brengues M., Parker R. Processing bodies require RNA for assembly and contain nontranslating mRNAs. RNA 2005, 11:371-382.
-
(2005)
RNA
, vol.11
, pp. 371-382
-
-
Teixeira, D.1
Sheth, U.2
Valencia-Sanchez, M.A.3
Brengues, M.4
Parker, R.5
-
44
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
Wang Y., Liu C.L., Storey J.D., Tibshirani R.J., Herschlag D., Brown P.O. Precision and functional specificity in mRNA decay. Proc. Natl. Acad. Sci. USA 2002, 99:5860-5865.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5860-5865
-
-
Wang, Y.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
Brown, P.O.6
-
45
-
-
0033229970
-
The economics of ribosome biosynthesis in yeast
-
Warner J.R. The economics of ribosome biosynthesis in yeast. Trends Biochem. Sci. 1999, 24:437-440.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 437-440
-
-
Warner, J.R.1
-
46
-
-
58549084410
-
How Saccharomyces responds to nutrients
-
Zaman S., Lippman S.I., Zhao X., Broach J.R. How Saccharomyces responds to nutrients. Annu. Rev. Genet. 2008, 42:27-81.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 27-81
-
-
Zaman, S.1
Lippman, S.I.2
Zhao, X.3
Broach, J.R.4
|