-
1
-
-
27644596641
-
Opinion: What is the role of protein aggregation in neurodegeneration?
-
Ross CA, Poirier MA. Opinion: What is the role of protein aggregation in neurodegeneration? Nat Rev Mol Cell Biol 2005; 6:891-898.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 891-898
-
-
Ross, C.A.1
Poirier, M.A.2
-
2
-
-
78649357985
-
Protein quality control in the cytosol and the endoplasmic reticulum: Brothers in arms
-
Buchberger A, Bukau B, Sommer T. Protein quality control in the cytosol and the endoplasmic reticulum: brothers in arms. Mol Cell 2010; 40:238-252.
-
(2010)
Mol Cell
, vol.40
, pp. 238-252
-
-
Buchberger, A.1
Bukau, B.2
Sommer, T.3
-
3
-
-
77957293977
-
Molecular chaperones and substrate ubiquitination control the efficiency of endoplasmic reticulum-associated degradation
-
Goeckeler JL, Brodsky JL. Molecular chaperones and substrate ubiquitination control the efficiency of endoplasmic reticulum-associated degradation. Diabetes Obes Metab 2010; 12:32-38.
-
(2010)
Diabetes Obes Metab
, vol.12
, pp. 32-38
-
-
Goeckeler, J.L.1
Brodsky, J.L.2
-
4
-
-
33846262456
-
Abnormalities of the nucleus and nuclear inclusions in neurodegenerative disease: A work in progress
-
Woulfe JM. Abnormalities of the nucleus and nuclear inclusions in neurodegenerative disease: a work in progress. Neuropathol Appl Neurobiol 2007; 33:2-42.
-
(2007)
Neuropathol Appl Neurobiol
, vol.33
, pp. 2-42
-
-
Woulfe, J.M.1
-
5
-
-
17644396667
-
Degradation-mediated protein quality control in the nucleus
-
Gardner RG, Nelson ZW, Gottschling DE. Degradation-mediated protein quality control in the nucleus. Cell 2005; 120:803-815.
-
(2005)
Cell
, vol.120
, pp. 803-815
-
-
Gardner, R.G.1
Nelson, Z.W.2
Gottschling, D.E.3
-
6
-
-
26244451787
-
Nuclear aggresomes form by fusion of PML-associated aggregates
-
Fu L, Gao YS, Tousson A, Shah A, Chen TL, Vertel BM, et al. Nuclear aggresomes form by fusion of PML-associated aggregates. Mol Biol Cell 2005; 16:4905-4917.
-
(2005)
Mol Biol Cell
, vol.16
, pp. 4905-4917
-
-
Fu, L.1
Gao, Y.S.2
Tousson, A.3
Shah, A.4
Chen, T.L.5
Vertel, B.M.6
-
7
-
-
65649121163
-
Intra-nuclear degradation of polyglutamine aggregates by the ubiquitin proteasome system
-
Iwata A, Nagashima Y, Matsumoto L, Suzuki T, Yamanaka T, Date H, et al. Intra-nuclear degradation of polyglutamine aggregates by the ubiquitin proteasome system. J Biol Chem 2009; 284:9796-9803.
-
(2009)
J Biol Chem
, vol.284
, pp. 9796-9803
-
-
Iwata, A.1
Nagashima, Y.2
Matsumoto, L.3
Suzuki, T.4
Yamanaka, T.5
Date, H.6
-
8
-
-
33745612063
-
PML clastosomes prevent nuclear accumulation of mutant ataxin-7 and other polyglutamine proteins
-
Janer A, Martin E, Muriel MP, Latouche M, Fujigasaki H, Ruberg M, et al. PML clastosomes prevent nuclear accumulation of mutant ataxin-7 and other polyglutamine proteins. J Cell Biol 2006; 174:65-76.
-
(2006)
J Cell Biol
, vol.174
, pp. 65-76
-
-
Janer, A.1
Martin, E.2
Muriel, M.P.3
Latouche, M.4
Fujigasaki, H.5
Ruberg, M.6
-
9
-
-
78650731442
-
Disorder targets misorder in nuclear quality control degradation: A disordered ubiquitin ligase directly recognizes its misfolded substrates
-
Rosenbaum JC, Fredrickson EK, Oeser ML, Garrett-Engele CM, Locke MN, Richardson LA, et al. Disorder targets misorder in nuclear quality control degradation: a disordered ubiquitin ligase directly recognizes its misfolded substrates. Mol Cell 2011; 41:93-106.
-
(2011)
Mol Cell
, vol.41
, pp. 93-106
-
-
Rosenbaum, J.C.1
Fredrickson, E.K.2
Oeser, M.L.3
Garrett-Engele, C.M.4
Locke, M.N.5
Richardson, L.A.6
-
10
-
-
1242291789
-
CHIP: A link between the chaperone and proteasome systems
-
McDonough H, Patterson C. CHIP: a link between the chaperone and proteasome systems. Cell Stress Chaperones 2003; 8:303-308.
-
(2003)
Cell Stress Chaperones
, vol.8
, pp. 303-308
-
-
McDonough, H.1
Patterson, C.2
-
11
-
-
75749101057
-
Cytoplasmic protein quality control degradation mediated by parallel actions of the E3 ubiquitin ligases Ubr1 and San1
-
Heck JW, Cheung SK, Hampton RY. Cytoplasmic protein quality control degradation mediated by parallel actions of the E3 ubiquitin ligases Ubr1 and San1. Proc Natl Acad Sci USA 2010; 107:1106-1111.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 1106-1111
-
-
Heck, J.W.1
Cheung, S.K.2
Hampton, R.Y.3
-
12
-
-
77954196466
-
Ubr1 and Ubr2 function in a quality control pathway for degradation of unfolded cytosolic proteins
-
Nillegoda NB, Theodoraki MA, Mandal AK, Mayo KJ, Ren HY, Sultana R, et al. Ubr1 and Ubr2 function in a quality control pathway for degradation of unfolded cytosolic proteins. Mol Biol Cell 2010; 21:2102-2116.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 2102-2116
-
-
Nillegoda, N.B.1
Theodoraki, M.A.2
Mandal, A.K.3
Mayo, K.J.4
Ren, H.Y.5
Sultana, R.6
-
13
-
-
33746228127
-
Distinct ubiquitin- ligase complexes define convergent pathways for the degradation of ER proteins
-
Carvalho P, Goder V, Rapoport TA. Distinct ubiquitin- ligase complexes define convergent pathways for the degradation of ER proteins. Cell 2006; 126:361-373.
-
(2006)
Cell
, vol.126
, pp. 361-373
-
-
Carvalho, P.1
Goder, V.2
Rapoport, T.A.3
-
14
-
-
33746208871
-
A luminal surveillance complex that selects misfolded glycoproteins for ER-associated degradation
-
Denic V, Quan EM, Weissman JS. A luminal surveillance complex that selects misfolded glycoproteins for ER-associated degradation. Cell 2006; 126:349-359.
-
(2006)
Cell
, vol.126
, pp. 349-359
-
-
Denic, V.1
Quan, E.M.2
Weissman, J.S.3
-
15
-
-
33746587049
-
A complex of Yos9p and the HRD ligase integrates endoplasmic reticulum quality control into the degradation machinery
-
Gauss R, Jarosch E, Sommer T, Hirsch C. A complex of Yos9p and the HRD ligase integrates endoplasmic reticulum quality control into the degradation machinery. Nat Cell Biol 2006; 8:849-854.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 849-854
-
-
Gauss, R.1
Jarosch, E.2
Sommer, T.3
Hirsch, C.4
-
16
-
-
33646552435
-
The Hrd1p ligase complex forms a linchpin between ER-lumenal substrate selection and Cdc48p recruitment
-
Gauss R, Sommer T, Jarosch E. The Hrd1p ligase complex forms a linchpin between ER-lumenal substrate selection and Cdc48p recruitment. EMBO J 2006; 25:1827-1835.
-
(2006)
EMBO J
, vol.25
, pp. 1827-1835
-
-
Gauss, R.1
Sommer, T.2
Jarosch, E.3
-
17
-
-
57749116223
-
Degradation of a cytosolic protein requires endoplasmic reticulum-associated degradation machinery
-
Metzger MB, Maurer MJ, Dancy BM, Michaelis S. Degradation of a cytosolic protein requires endoplasmic reticulum-associated degradation machinery. J Biol Chem 2008; 283:32302-32316.
-
(2008)
J Biol Chem
, vol.283
, pp. 32302-32316
-
-
Metzger, M.B.1
Maurer, M.J.2
Dancy, B.M.3
Michaelis, S.4
-
18
-
-
0035684430
-
CHIP is a chaperone-dependent E3 ligase that ubiquitylates unfolded protein
-
Murata S, Minami Y, Minami M, Chiba T, Tanaka K. CHIP is a chaperone-dependent E3 ligase that ubiquitylates unfolded protein. EMBO Rep 2001; 2:1133-1138.
-
(2001)
EMBO Rep
, vol.2
, pp. 1133-1138
-
-
Murata, S.1
Minami, Y.2
Minami, M.3
Chiba, T.4
Tanaka, K.5
-
19
-
-
0347357617
-
Protein folding and misfolding
-
Dobson CM. Protein folding and misfolding. Nature 2003; 426:884-890.
-
(2003)
Nature
, vol.426
, pp. 884-890
-
-
Dobson, C.M.1
-
20
-
-
0033520987
-
Posttranslational quality control: Folding, refolding and degrading proteins
-
Wickner S, Maurizi MR, Gottesman S. Posttranslational quality control: folding, refolding and degrading proteins. Science 1999; 286:1888-1893.
-
(1999)
Science
, vol.286
, pp. 1888-1893
-
-
Wickner, S.1
Maurizi, M.R.2
Gottesman, S.3
-
21
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, Dephoure N, et al. Global analysis of protein expression in yeast. Nature 2003; 425:737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
-
22
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, et al. Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 2000; 11:4241-4257.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
-
23
-
-
0035827709
-
Starvation promotes nuclear accumulation of the hsp70 Ssa4p in yeast cells
-
Chughtai ZS, Rassadi R, Matusiewicz N, Stochaj U. Starvation promotes nuclear accumulation of the hsp70 Ssa4p in yeast cells. J Biol Chem 2001; 276:20261-20266.
-
(2001)
J Biol Chem
, vol.276
, pp. 20261-20266
-
-
Chughtai, Z.S.1
Rassadi, R.2
Matusiewicz, N.3
Stochaj, U.4
-
24
-
-
0027996115
-
Protein disaggregation mediated by heat-shock protein Hsp104
-
Parsell DA, Kowal AS, Singer MA, Lindquist S. Protein disaggregation mediated by heat-shock protein Hsp104. Nature 1994; 372:475-478.
-
(1994)
Nature
, vol.372
, pp. 475-478
-
-
Parsell, D.A.1
Kowal, A.S.2
Singer, M.A.3
Lindquist, S.4
-
26
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero P, Obradovic Z, Li X, Garner EC, Brown CJ, Dunker AK. Sequence complexity of disordered protein. Proteins 2001; 42:38-48.
-
(2001)
Proteins
, vol.42
, pp. 38-48
-
-
Romero, P.1
Obradovic, Z.2
Li, X.3
Garner, E.C.4
Brown, C.J.5
Dunker, A.K.6
-
27
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 2005; 21:3433-3434.
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
28
-
-
24044515001
-
FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded
-
Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg EH, Man O, Beckmann JS, et al. FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics 2005; 21:3435-3438.
-
(2005)
Bioinformatics
, vol.21
, pp. 3435-3438
-
-
Prilusky, J.1
Felder, C.E.2
Zeev-Ben-Mordehai, T.3
Rydberg, E.H.4
Man, O.5
Beckmann, J.S.6
-
29
-
-
30344432688
-
Assessing protein disorder and induced folding
-
Receveur-Brechot V, Bourhis JM, Uversky VN, Canard B, Longhi S. Assessing protein disorder and induced folding. Proteins 2006; 62:24-45.
-
(2006)
Proteins
, vol.62
, pp. 24-45
-
-
Receveur-Brechot, V.1
Bourhis, J.M.2
Uversky, V.N.3
Canard, B.4
Longhi, S.5
-
30
-
-
3242743649
-
Probing protein structure by limited proteolysis
-
Fontana A, de Laureto PP, Spolaore B, Frare E, Picotti P, Zambonin M. Probing protein structure by limited proteolysis. Acta Biochim Pol 2004; 51:299-321.
-
(2004)
Acta Biochim Pol
, vol.51
, pp. 299-321
-
-
Fontana, A.1
de Laureto, P.P.2
Spolaore, B.3
Frare, E.4
Picotti, P.5
Zambonin, M.6
-
31
-
-
34548847733
-
Using circular dichroism spectra to estimate protein secondary structure
-
Greenfield NJ. Using circular dichroism spectra to estimate protein secondary structure. Nat Protoc 2006; 1:2876-2890.
-
(2006)
Nat Protoc
, vol.1
, pp. 2876-2890
-
-
Greenfield, N.J.1
-
32
-
-
52249085709
-
The unfoldomics decade: An update on intrinsically disordered proteins
-
Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, et al. The unfoldomics decade: an update on intrinsically disordered proteins. BMC Genomics 2008; 9:1.
-
(2008)
BMC Genomics
, vol.9
, pp. 1
-
-
Dunker, A.K.1
Oldfield, C.J.2
Meng, J.3
Romero, P.4
Yang, J.Y.5
Chen, J.W.6
-
33
-
-
33748074139
-
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
-
Haynes C, Oldfield CJ, Ji F, Klitgord N, Cusick ME, Radivojac P, et al. Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. PLoS Comput Biol 2006; 2:100.
-
(2006)
PLoS Comput Biol
, vol.2
, pp. 100
-
-
Haynes, C.1
Oldfield, C.J.2
Ji, F.3
Klitgord, N.4
Cusick, M.E.5
Radivojac, P.6
-
34
-
-
4644313922
-
A domain in the N-terminal part of Hsp26 is essential for chaperone function and oligomerization
-
Haslbeck M, Ignatiou A, Saibil H, Helmich S, Frenzl E, Stromer T, et al. A domain in the N-terminal part of Hsp26 is essential for chaperone function and oligomerization. J Mol Biol 2004; 343:445-455.
-
(2004)
J Mol Biol
, vol.343
, pp. 445-455
-
-
Haslbeck, M.1
Ignatiou, A.2
Saibil, H.3
Helmich, S.4
Frenzl, E.5
Stromer, T.6
-
35
-
-
70349470609
-
Substrate binding site flexibility of the small heat shock protein molecular chaperones
-
Jaya N, Garcia V, Vierling E. Substrate binding site flexibility of the small heat shock protein molecular chaperones. Proc Natl Acad Sci USA 2009; 106:15604-15609.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 15604-15609
-
-
Jaya, N.1
Garcia, V.2
Vierling, E.3
-
36
-
-
1642524277
-
Analysis of the regulation of the molecular chaperone Hsp26 by temperature-induced dissociation: The N-terminal domail is important for oligomer assembly and the binding of unfolding proteins
-
Stromer T, Fischer E, Richter K, Haslbeck M, Buchner J. Analysis of the regulation of the molecular chaperone Hsp26 by temperature-induced dissociation: the N-terminal domail is important for oligomer assembly and the binding of unfolding proteins. J Biol Chem 2004; 279:11222-11228.
-
(2004)
J Biol Chem
, vol.279
, pp. 11222-11228
-
-
Stromer, T.1
Fischer, E.2
Richter, K.3
Haslbeck, M.4
Buchner, J.5
-
37
-
-
70349996473
-
ANCHOR: Web server for predicting protein binding regions in disordered proteins
-
Dosztanyi Z, Meszaros B, Simon I. ANCHOR: web server for predicting protein binding regions in disordered proteins. Bioinformatics 2009; 25:2745-2746.
-
(2009)
Bioinformatics
, vol.25
, pp. 2745-2746
-
-
Dosztanyi, Z.1
Meszaros, B.2
Simon, I.3
-
38
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, et al. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 2003; 31:3497-3500.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
-
39
-
-
0036017388
-
Evolutionary rate heterogeneity in proteins with long disordered regions
-
Brown CJ, Takayama S, Campen AM, Vise P, Marshall TW, Oldfield CJ, et al. Evolutionary rate heterogeneity in proteins with long disordered regions. J Mol Evol 2002; 55:104-110.
-
(2002)
J Mol Evol
, vol.55
, pp. 104-110
-
-
Brown, C.J.1
Takayama, S.2
Campen, A.M.3
Vise, P.4
Marshall, T.W.5
Oldfield, C.J.6
|