Chromosome diversity and evolution in tribe Lilieae (Liliaceae) with emphasis on Chinese species

Journal of Plant Research

Volumn 125, Issue 1, 2012, Pages 55-69

  Gao, Yun Dong ^a   Zhou, Song Dong ^a   He, Xing Jin ^a   Wan, Juan ^a  

^a SICHUAN UNIVERSITY   (China)

Author keywords

China; ITS; Karyotype asymmetry; Lilieae; Secondary constrictions

Indexed keywords

ARTICLE; CHINA; CYTOLOGY; GENETIC VARIABILITY; GENETICS; KARYOTYPING; LILIACEAE; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT CHROMOSOME; SPECIES DIFFERENCE;

BASE SEQUENCE; CHINA; CHROMOSOMES, PLANT; EVOLUTION, MOLECULAR; GENETIC VARIATION; KARYOTYPING; LILIACEAE; PHYLOGENY; SPECIES SPECIFICITY;

CARDIOCRINUM; FRITILLARIA (ANGIOSPERM); LILIACEAE; LILIALES; LILIUM; MAGNOLIOPHYTA; NOMOCHARIS; NOTHOLIRION;

EID: 83355169693     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10265-011-0422-1     Document Type: Article

References (61)

1. Angiosperm Phylogeny Group (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc 161(2): 105-121.
2. Arano H (1963) Cytological studies in subfamily Carduoideae (Compositae) of Japan. IX. The karyotype analysis and phylogenic considerations on Pertya and Ainsliaea. Botanical Magazine (Tokyo) 76: 32-39.
3. Ceccarelli M, Minelli S, Maggini F, Cionini PG (1995) Genome size variation in Vicia faba. Heredity 74: 180-187.
4. Comber HF (1949) A new classification of genus Lilium. Royal Horticultural Society of the Liliy Year Book, vol 13. p 85.
5. Das AB, Mohanty S, Marrs RH, Das P (1999) Somatic chromosome number and karyotype diversity in fifteen species of Mammillaria of the family Cactaceae. Cytobios 97: 141-151.
6. De Melo Nationiel F, Guerra M, Benko-Iseppon AM, De Menezes NL (1997) Cytogenetics and cytotaxonomy of Velloziaceae. Plant Syst Evol 204: 257-273.
7. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
8. Fay MF, Chase MW, Rønsted N et al (2006) Phylogenetics of Liliales: summarized evidence from combined analyses of five plastid and one mitochondrial loci. In: Columbus JT, Friar EA, Porter JM, Prince LM, Simpson MG (eds) Monocots: comparative biology and evolution (excluding Poales). Rancho Santa Ana Botanic Garden, Claremont, pp 559-565.
9. Gao YD, Zhou SD, He XJ (2009) Karyotype of four genera in Liliaceae (s. str.) from Hengduan Mountains of Southwest China. Acta Botanica Yunnancia 31: 399-405.
10. González-Aguilera JJ, Fernández-Peralta AM (1984) Phylogenetic relationships in the family Resedaceae. Genetica 64: 185-198.
11. Greilhuber J, Speta F (1976) C-banded karyotypes in the Scilla hohenackeri group, S. persica and Puschkinia (Liliaceae). Plant Syst Evol 126: 149-188.
12. Hayashi K, Kawano S (2000) Molecular systematics of Lilium and allied genera (Liliaceae): phylogenetic relationships among Lilium and related genera based on the rbcL and matK gene sequence data. Plant Species Biol 15: 73-93.
13. Hong DY (1990) Plant cytotaxonomy. Science Press, Beijing.
14. Huziwara Y (1962) Karyotype analysis in some genera of Compositae. VIII. Further studies on the chromosome of Aster. Am J Bot 49: 116-119.
15. İkinci N, Oberprieler C, Güner A (2006) On the origin of European lilies: phylogenetic analysis of Lilium section Liriotypus (Liliaceae) using sequences of the nuclear ribosomal transcribed spacers. Willdenowia 36: 647-656.
16. Kelchner SA (2000) The evolution of non-coding chloroplast DNA and Its application in plant systematics. Ann Missouri Bot Garden 87: 482-498.
17. Liang SY (1995) Chorology of Liliaceae (S. Str.) and its bearing on the Chinese flora. Acta Phytotaxonomica Sinica 33: 27-51.
18. Liang SY, Tamura M (2000) In: Wu ZY, Raven PH (eds.) Flora of China, vol 24. Science Press/Missouri Botanical Garden Press, Beijing/St. Louis, pp 135-159.
19. Lifante ZD (1996) A karyological study of Asphodelus L. (Asphodelaceae) from the Western Mediterranean. Bot J Linn Soc 121: 285-344.
20. Morrison DA (2009) A framework for phylogenetic sequence alignment. Plant Syst Evol 282: 127-149.
21. Muratović E, Bogunić F, Šoljan D, Siljak-Yakovlev S (2005) Does Lilium bosniacum merit species rank? A classical and molecular-cytogenetic analysis. Plant Syst Evol 252: 97-109.
22. Muratović E, Robin O, Bogunić F, Šoljan D, Siljak-Yakovlev S (2010a) Karyotype evolution and speciation of European lilies from Lilium sect. Liriotypus. Taxon 59: 165-175.
23. Muratović E, Hidalgo O, Garnatje T, Siljak-Yakovlev S (2010b) Molecular phylogeny and genome size in European Lilies (Genus Lilium, Liliaceae). Adv Sci Lett 3: 180-189.
24. Narayan RKJ, Rees H (1976) Nuclear DNA variation in Lathyrus. Chromosoma 54: 141-154.
25. Nishikawa T, Okazaki K, Uchino T, Arakawa K, Nagamine T (1999) A molecular phylogeny of Lilium in the internal transcribed spacer region. J Mol Evol 49: 238-249.
26. Nishikawa T, Okazaki K, Arakawa K, Nagamine T (2001) Phylogenetic analysis of section Sinomartagon in genus Lilium using sequences of the internal transcribed spacer region in nuclear ribosomal DNA. Breed Sci 51: 39-46.
27. Noda S (1991) Chromosomal variation and evolution in the genus Lilium. In: Tsuchiya T, Gupta PK (eds) Chromosome engineering in plants: genetics, breeding, evolution, part B. Elsevier, Amsterdam, pp 507-524.
28. Nylander JAA (2004) MrModeltest 2. 0. Program distributed by the author. Department of Systematic Zoology, EBC, Uppsala University, Uppsala.
29. Paszko B (2006) A critical review and a new proposal of karyotype asymmetry indices. Plant Syst Evol 258: 39-48.
30. Patterson TB, Givnish TJ (2002) Phylogeny, concerted convergence, and phylogenetic niche conservatism in the core Liliales: Insights from rbcL and ndhF sequence data. Evolution 56: 233-252.
31. Peruzzi L, Leitch IJ, Caparelli KF (2009) Chromosome diversity and evolution in Liliaceae. Ann Bot 103: 459-475.
32. Raina SN, Rees H (1983) DNA variation between and within chromosome complements of Vicia species. Heredity 51: 335-346.
33. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
34. Rønsted N, Law S, Thornton H, Fay MF, Chase MW (2005) Molecular phylogenetic evidence for the monophyly of Fritillaria and Lilium (Liliaceae; Liliales) and the infrageneric classification of Fritillaria. Mol Phylogenet Evol 35: 509-527.
35. Rudall PJ, Stobart KL, Hong WP, Conran JG, Funess CA, Kite GC, Chase MW (2000) Consider the lilies-systematics of Liliales. In: Wilson KL, Morrison DA (eds) Monocots: systematics and evolution. CSIRO Publishing, Australia, pp 347-359.
36. Shan F, Yan G, Plummer JA (2003) Karyotype evolution in the genus Boronia (Rutaceae). Bot J Linn Soc 142: 309-320.
37. Siljak-Yakovlev S, Peccenini S, Muratovic E, Zoldos V, Robin O, Vallés J (2003) Chromosomal differentiation and genome size in three European mountain Lilium species. Plant Syst Evol 236: 165-173.
38. Smyth DR, Kongsuwan K, Wisudharomn S (1989) A survey of C-band patterns in chromosomes of Lilium (Liliaceae). Plant Syst Evol 163: 53-69.
39. Stace HM (1978) Cytoevolution in the genus Calotis R. Br. (Compositae: Astereae). Aust J Bot 26: 287-307.
40. Stebbins GL (1971) Chromosomal evolution in higher plants. Edward Arnold, London.
41. Stewart RN (1947) The morphology of somatic chromosomes in Lilium. Am J Bot 34: 9-26.
42. Swofford DL (2003) PAUP*. Phylogenetic analysis using Parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland.
43. Takhtajan A (1997) Diversity and classification of flowering plants. Columbia University Press, New York.
44. Tamura MN (1998) Liliaceae. In: Kubitzki K (ed) The families and genera of vascular plants. III. Flowering plants-monocotyledons, Lilianae (except Orchidaceae). Springer, Berlin, pp 343-353.
45. Tamura MN, Yamashita J, Fuse S, Haraguchi M (2004) Molecular phylogeny of monocotyledons inferred from combined analysis of plastid matK and rbcL gene sequences. J Plant Res 117: 109-120.
46. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
47. The State Pharmacopoeia Commission of the People's Republic of China (2000) Pharmacopoeia of the People's Republic of China. Chemical Industry Press, Beijing.
48. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
49. Vanzela ALL, Ruas PM, Marin-Morales MA (1997) Karyotype studies of some species of Dalechampia Plum. (Euphorbiaceae). Bot J Linn Soc 125: 25-33.
50. Venora G, Blangiforti S, Ruffini Castiglione M, Pignone D, Losavio F, Cremonini R (2002) Chromatin organisation and computer aided karyotyping of Triticum durum Desf. cv Timilia. Caryologia 55: 91-98.
51. Wang FZ, Tang J (1980) Lilium L. In: Flora Reipublicae Popularis Sinicae, vol 14. Science Press, Beijing, pp 116-157.
52. Watanabe K, King RM, Yahara T, Ito M, Yokoyama J, Suzuki T, Crawford DJ (1995) Chromosomal cytology and evolution in Eupatorieae (Asteraceae). Ann Missouri Bot Garden 82: 581-592.
53. Watanabe K, Yahara T, Denda T, Kosuge K (1999) Chromosomal evolution in the genus Brachyscome (Asteraceae, Astereae): statistical tests regarding correlation between changes in karyotype and habit using phylogenetic information. J Plant Res 112: 145-161.
54. Wen J (1999) Evolution of eastern Asian and eastern North American disjunct distributions in flowering plants. Annu Rev Ecol Syst 30: 421-455.
55. Wen J (2001) Evolution of Eastern Asian-Eastern North American biogeographic disjunctions: a few additional issues. Int J Plant Sci 162(6): S117-S122 (Supplement: historical biogeography of the Northern Hemisphere (Nov. 2001)).
56. Wen J, Zimmer EA (1996) Phylogeny and biogeography of Panax L. (the Ginseng Genus, Araliaceae): inferences from ITS Sequences of nuclear ribosomal DNA. Mol Phylogenet Evol 6(2): 167-177.
57. Wen J, Shi SH, Jansen RK, Zimmer EA (1998) Phylogeny and biogeography of Aralia sect. Aralia (Araliaceae). Am J Bot 85: 885-875.
58. Wu ZY, Li H, Yang CR (1994) Cytogeography and phylogeny of Lilieae. Acta Botanica Yunnanica 1994(Suppl. VI): 101-112.
59. Xiang QY, Soltis DE (2001) Dispersal-vicariance analyses of intercontinental disjuncts: historical biogeographical implications for angiosperms in the Northern Hemisphere. Int J Plant Sci 162: S29-S39 (Supplement: Historical Biogeography of the Northern Hemisphere (Nov. 2001)).
60. Xiang QY, Soltis DE, Soltis PS, Manchester SR, Crawford DJ (2000) Timing the eastern Asian-eastern North American floristic disjunction: molecular clock corroborates paleontological estimates. Mol Phylogenet Evol 15: 462-472.
61. Zarco CR (1986) A new method for estimating karyotype asymmetry. Taxon 35: 526-530.