Phylogeny and biogeography of Panax L (the ginseng genus, Araliaceae): Inferences from ITS sequences of nuclear ribosomal DNA

Molecular Phylogenetics and Evolution

Volumn 6, Issue 2, 1996, Pages 167-177

  Wen, Jun ^a,b   Zimmer, Elizabeth A ^a  

^a DEPARTMENT OF PALEOBIOLOGY   (United States)

^b Department of Environmental and Radiological Health Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARALIA; ARALIACEAE; PANAX; PANAX GINSENG; PANAX NOTOGINSENG; PANAX QUINQUEFOLIUS; PANAX TRIFOLIUS;

PLANT DNA; RIBOSOME DNA;

ARTICLE; ASIA; CLASSIFICATION; GENETICS; GINSENG; MEDICINAL PLANT; MOLECULAR GENETICS; NORTH AMERICA; NUCLEOTIDE REPEAT; PHYLOGENY;

ASIA; DNA, PLANT; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; NORTH AMERICA; PANAX; PHYLOGENY; PLANTS, MEDICINAL; REPETITIVE SEQUENCES, NUCLEIC ACID;

EID: 0030256137     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1996.0069     Document Type: Article

References (70)

1. Baldwin, B. G. (1992). Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositae. Mol. Phylogenet. Evol. 1: 3-16.
2. Baldwin, B. G. (1993). Molecular phylogenetics of Calycadenia (Compositae) based on its sequences of nuclear ribosomal DNA: Chromosomal and morphological evolution reexamined. Am. J. Bot. 80: 222-238.
3. Baum, D., Sytsma, K. J., and Hoch, P. C. (1994). A phylogenetic analysis of Epilobium (Onagraceae) based on nuclear ribosomal DNA sequences. Syst. Bot. 19: 363-388.
4. Bentham, G., and Hooker, J. D. (1867). "Genera Plantarum," Vol. 1. Reeve, London.
5. Boufford, D. E., and Spongberg, S. A. (1983). Eastern Asian-Eastern North American phytogeographical relationships - A history from the time of Linnaeus to the twentieth century. Ann. Mo. Bot. Gard. 70: 423-439.
6. Bremer, K. (1988). The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795-803.
7. Bult, C., Kallersjo, M., and Suh, Y. (1992). Amplification and sequencing of 16/18S rDNA from gel-purified total plant DNA. Plant Mol. Biol. Reporter 10: 273-284.
8. Crawford, D. J., Lee, N. S., and Stuessy, T. F. (1992). Plant species disjunctions: Perspectives from molecular data. Aliso 13: 395-409.
9. Decaisne, J., and Planchon, J. E. (1854). Esquisse d'une monographie des Araliacees. Rev. Hort. 1854: 104-109. [In French]
10. Donoghue, M. J., Olmstead, R. G., Smith, J. F., and Palmer, J. D. (1992). Phylogenetic relationships of the Dipsacales based on rbcL sequences. Ann. Mo. Bot. Gard. 79: 333-345.
11. Doyle, J. J., and Doyle, J. L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
12. Duke, J. A. (1989). "Ginseng: A Concise Handbook," Reference, Algonac, MI.
13. Dunn, I. S., and Blattner, F. R. 1987. Charons 36 to 40: Multi enzyme, high capacity, recombination deficient replacement vectors with polylinkers and polystuffers. Nucleic Acids Res. 15: 2677-2698.
14. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
15. Felsenstein, J. (1993). "PHYLIP (Phylogeny Inference Package), Version 3.5c," distributed by the author, Department of Genetics, Univ. of Washington, Seattle.
16. Gaut, B. S., and Weir, B. S. (1994). Detecting substitution-rate heterogeneity among regions of a nucleotide sequence. Mol. Biol. Evol. 11: 620-629.
17. Gene Codes Corporation, Inc. (1994). "Sequencher 2.1 Reference, Advanced, User Friendly Software Tools for DNA Sequencing," Gene Codes Corp., Inc., Ann Arbor, MI.
18. Graham, S. A. (1966). The genera of Araliaceae in the southeastern United States. J. Arnold Arbor 47: 126-136.
19. Guha, S. (1971). Cytotaxonomy of Araliaceae. Proc. Indian Sci. Cong. Assoc. Sect. 6, 58: 471.
20. Halenius, J. (1750). "Plantae Rariores Camschatcenses," thesis, University of Uppsala, Uppsala.
21. Hamby, R. K., Sims, L. E., Issel, L. E., and Zimmer, E. A. (1988). Direct ribosomal RNA sequencing: Optimization of extraction and sequencing methods for work with higher plants. Plant Mol. Biol. Report 6: 175-192.
22. Hara, H. (1952, 1956). Contributions to the study of variations in the Japanese plants closely related to those of Europe or North America, Part 1 and Part 2. J. Fac. Sci., Univ. Tokyo, Sect. 3, Bot. 6: 29-96, 343-391.
23. Hara, H. (1970). On the Asiatic species of the genus Panax. J. Jpn. Bot. 45: 197-212, plates 10-12.
24. Harms, H. (1897). Zur Kenntnis der Gattungen Aralia und Panax. Bot. Jahrb. Syst. 23: 1-23.
25. Harn, C., and Whang, J. (1963). Development of female gametophyte of Panax ginseng. Korean J. Bot. 6: 3-6.
26. Heywood, V. H. (1971, Ed.). "The Biology and Chemistry of the Umbelliferae," J. Linn. Soc., Bot. 63, Suppl. 1. Academic Press, London.
27. Hillis, D. M., and Dixon, M. T. (1989). Vertebrate phylogeny: Evidence from 28S ribosomal DNA sequences. In "The Hierarchy of Life" (B. Fernholm, K. Bremer, and H. Jornvall, Eds.), pp. 355-367, Elsevier, Amsterdam.
28. Hoey, M. T., and Parks, C. R. (1991). Intercontinental patterns of genetic divergence in Asian, North American and Turkish species of Liquidambar (Hamamelidaceae). Am. J. Bot. 78: 938-947.
29. Hoo, G., and Tseng, C.-J. (1973). On the Chinese species of Panax Linn. Acta Phytotax Sin. 11: 431-438. [In Chinese]
30. Hoo, G., and Tseng, C.-J. (1978). "Angiospermae, Dicotyledoneae, Araliaceae - Flora Reipublicae Popularis Sinicae, Vol. 54," Science Press, Beijing. [In Chinese]
31. Hooker, J. D. (1879). "The Flora of British India," Reeve, Kent, England.
32. Hu, S. Y. (1976). The genus Panax (ginseng) in Chinese medicine. Econ. Bot. 30: 11-28.
33. Hutchinson, J. (1967). "The Genera of Flowering Plants, Vol. 2," Oxford Univ. Press, London.
34. Kim, K.-J., and Jansen, R. K. (1994). Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): Additional information from internal transcribed spacer sequences of nuclear ribosomal DNA. Plant Syst. Evol. 190: 157-185.
35. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
36. Kuhner, M. K., and Felsenstein, J. (1994). A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11: 459-468.
37. Lewis, W. H. (1986). Ginseng: A medical enigma. In "Plants in Indigenous Medicine and Diet: Biobehavioral Approaches" (N. L. Etkin, Ed.), pp. 290-305, Redgrave, Bedford Hills, New York.
38. Li, H. L. (1942). The Araliaceae of China. Sargentia 2: 1-134.
39. Li, H. L. (1952). Floristic relationships between Eastern Asia and eastern North America. Trans. Am. Philos. Soc. 42: 371-429.
40. Li, H. L. (1972). Eastern Asia-Eastern North America species-pairs in wide-ranging genera. In "Floristics and Paleofloristics of Asia and Eastern North America" (A. Graham, Ed.), pp. 65-78, Elsevier, Amsterdam.
41. Li, W.-H., and Graur, D. (1991). "Fundamentals of Molecular Evolution," Sinauer, Sunderland, MA.
42. Matsuura, H., and Suto, T. (1935). Contribution to the idio-gram study in phanerogamous plants. I. J. Fac. Sci. Hokkaido Imp. Univ. Ser. 5, 5: 33-75.
43. Nickrent, D. L., Schuette, K. P., and Starr, E. M. (1994). A molecular phylogeny of Arceuthobium (Viscaceae) based on nuclear ribosomal DNA internal transcribed spacer sequences. Am. J. Bot. 81: 1149-1160.
44. Parks, C. R., and Wendel, J. F. (1990). Molecular divergence between Asian and North American species of Liriodendron (Magnoliaceae) with implications for interpretation of fossil floras. Am. J. Bot. 77: 1243-1256.
45. Sang, T., Crawford, D. J., Kim, S.-C., and Stuessy, T. F. (1994). Radiation of the endemic genus Dendroseris (Asteraceae) on the Juan Fernandez Islands: Evidence from sequences of the ITS regions of nuclear ribosomal DNA. Am. J. Bot. 81: 1494-1501.
46. Schlessman, M. A. (1987). Gender modification in North American ginsengs. BioScience 37: 469-475.
47. Schlessman, M. A. (1990). Phenotypic gender in sex changing dwarf ginseng, Panax trifolium (Araliaceae). Am. J. Bot. 77: 1125-1131.
48. Schlessman, M. A. (1991). Size, gender, and sex change in dwarf ginseng, Panax trifolium (Araliaceae). Oecologia 87: 588-595.
49. Sugiura, T. (1936). A list of chromosome numbers in angiospermous plants. II. Proc. Imp. Acad. Tokyo 12(5): 144-146.
50. Suh, Y., Thien, L. B., Reeve, H. E., and Zimmer, E. A. (1993). Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winterceae. Am. J. Bot. 80: 1042-1055.
51. Swofford, D. L. (1993). "PAUP: Phylogenetic Analysis Using Parsimony, version 3.1.," distributed by the Illinois Natural History Survey, Champaign, IL.
52. Tiffney, B. H. (1985). Perspectives on the origin of the floristic similarity between eastern Asia and eastern North America. J. Arnold Arbor 66: 73-94.
53. Vogelmann, J. E., and Gastony, G. J. (1987). Electrophoretic analysis of North American and eastern Asian populations of Agastache sect. Agastache (Labiatae). Am. J. Bot. 74: 385-393.
54. Wallich, N. (1829). An account of the Nipal ginseng. Acta Soc. Med. Phys. Calcutta 4: 115-120.
55. Wen, J. (1991). "Systematics of Aralia (Araliaceae)," Ph.D. dissertation, Ohio State Univ., Columbus.
56. Wen, J. (1993). Generic delimitation of Aralia (Araliaceae). Brittonia 45: 47-55.
57. Wen, J., and Jansen, R. K. (1992). Phylogenetic and phytogeographic studies on eastern Asian and eastern North American disjunct taxa: Intergrating morphological and chloroplast DNA data. Am. J. Bot. 79(Suppl.): 9. [Abstract]
58. Wen, J., and Stuessy, T. F. (1993). The phylogeny and biogeography of Nyssa (Cornaceae). Syst. Bot. 18: 68-79.
59. Wen, J., and Jansen, R. K. (1995). Morphological and molecular comparisons of Campsis grandiflora and C. radicans (Bignoniaceae), an eastern Asian and eastern North American vicariad species pair. Plant Syst. Evol. 196: 173-183.
60. Wen, J., Jansen, R. K., and Zimmer, E. A. (1996). Phylogenetic relationships and DNA sequence divergence of eastern Asian and eastern North American disjunct plants. In "Current Topics of Molecular Evolution" (M. Nei and N. Takahata, Eds.), pp. 37-44. Jointly published by the Pennsylvania State University and the Graduate University for Advanced Studies, Hayama, Japan.
61. Wendel, J. F., Schnabel, A., and Seelanan, T. (1995). Bi-directional interlocus concerted evolution following allopolyploidization in cotton (Gossypium). Proc. Nat. Acad. Sci. 92: 280-284.
62. White, T. J., Bruns, T., Lee, S., and Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In "PCR Protocols: A Guide to Methods and Applications" (M. Innis, D. Gelfand, J. Sninsky, and T. White, Eds.), pp. 315-322, Academic Press, San Diego.
63. Wojciechowski, M. F., Sanderson, M. J., Baldwin, B. G., and Donoghue, M. J. (1993). Monophyly of aneuploid Astragalus (Fabaceae): Evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Am. J. Bot. 80: 711-722.
64. Wu, Z. Y. (1983). On the significance of Pacific intercontinental discontinuity. Ann. Mo. Bot. Gard. 70: 577-590.
65. Xiang, Q.-Y., Soltis, D. E., and Soltis, P. S. (1994). Phylogenetic relationships and genetic divergence of disjunct taxa from eastern Asia and North America inferred from molecular data: examples from Cornaceae, Hydrangeaceae, and Saxifragaceae. Amer. J. Bot. 81(Suppl.): 138. [Abstract]
66. Yang, D.-Q. (1981). The cyto-taxonomic studies on some species of Panax L. Acta Phytotax. Sin. 19: 298-303. [In Chinese with English summary]
67. Yokota, Y., Kawata, T., Iida, Y., Kato, A., and Tanifuji, S. (1989). Nucleotide sequences of the 5.8S rRNA gene and internal transcribed spacer regions in carrot and broad bean ribosomal DNA. J. Mol. Evol. 29: 294-301.
68. Zheng, G.-Z., and Z. Liang. (1978). Tissue culture of Panax notoginseng. Plant Bull. 21: 181. [In Chinese]
69. Zhou, J., Huang, W.-G., Wu, M.-Z., Yang, C.-R., Feng, K.-M., and Wu, Z.-Y. (1975). Triterpenoids from Panax Linn. and their relationship with taxonomy and geographical distribution. Acta Phytotax. Sin. 13(2): 29-45, plates 6-7.
70. Zimmer, E. A., Martin, S. L., Beverley, S. M., Kan, Y. W., and Wilson, A. C. (1980). Rapid duplication and loss of genes coding for the alpha chains of hemoglobin. Proc. Natl. Acad. Sci. USA 77: 2158-2162.