Frondihabitans cladoniiphilus sp. nov., an actinobacterium of the family microbacteriaceae isolated from lichen, and emended description of the genus frondihabitans

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 12, 2011, Pages 3033-3038

  Cardinale, Massimiliano ^a   Grube, Martin ^b   Berg, Gabriele ^a  

^a GRAZ UNIVERSITY OF TECHNOLOGY   (Austria)

^b UNIVERSITY OF GRAZ   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL ENZYME; CARDIOLIPIN; CATALASE; DIAMINO ACID; FATTY ACID; ORNITHINE; OXIDOREDUCTASE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL;

ACTINOBACTERIA; AEROBIC BACTERIUM; ARTICLE; BACILLUS (ROD SHAPED BACTERIUM); BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; CELL MOTILITY; CHEMOTAXONOMY; CULTURE MEDIUM; FRONDIHABITANS CLADONIIPHILUS; GENE SEQUENCE; LICHENS; NONHUMAN; PH; PRIORITY JOURNAL; THALLUS;

ACTINOMYCETALES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; LICHENS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S;

EID: 83055185689     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.028324-0     Document Type: Article

References (34)

1. Bates, S. T., Cropsey, G. W. G., Caporaso, J. G., Knight, R. & Fierer, N. (2011). Bacterial communities associated with the lichen symbiosis. Appl Environ Microbiol 77, 1309-1314.
2. Bjelland, T., Grube, M., Hoem, S., Jorgensen, S. L., Daae, F. L., Thorseth, I. H. & Øvreås, L. (2011). Microbial metacommunities in the lichen-rock habitat. Environ Microbiol Rep 3, 434-442.
3. Bright, M. & Bulgheresi, S. (2010). A complex journey: transmission of microbial symbionts. Nat Rev Microbiol 8, 218-230.
4. Cardinale, M., Vieira de Castro, J., Jr, Müller, H., Berg, G. & Grube, M. (2008). In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria. FEMS Microbiol Ecol 66, 63-71.
5. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Eck, R. V. & Dayhoff, M. O. (1966). Atlas of Protein Sequence and Structure. Silver Springs, MD: National Biomedical Research Foundation.
8. Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.2). Cladistics 5, 164-166.
9. Felsenstein, J. (2005). PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
10. Greene, A. C., Euzéby, J. P., Tindall, B. J. & Patel, B. K. C. (2009). Proposal of Frondihabitans gen. nov. To replace the illegitimate genus name Frondicola Zhang et al. 2007. Int J Syst Evol Microbiol 59, 447-448.
11. Grube, M. & Berg, G. (2009). Microbial consortia of bacteria and fungi with focus on the lichen symbiosis. Fungal Biol Rev 23, 72-85.
12. Grube, M., Cardinale, M., de Castro, J. V., Jr, Müller, H. & Berg, G. (2009). Species-specific structural and functional diversity of bacterial communities in lichen symbioses. ISME J 3, 1105-1115.
13. Hodkinson, B. P. & Lutzoni, F. (2009). A microbiotic survey of lichenassociated bacteria reveals a new lineage from the Rhizobiales. Symbiosis 49, 163-180.
14. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
15. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
16. Kidd, K. K. & Sgaramella-Zonta, L. A. (1971). Phylogenetic analysis: concepts and methods. Am J Hum Genet 23, 235-252.
17. Kluge & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
18. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. &other authors (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948.
19. Lee, S. D. (2010). Frondihabitans peucedani sp. nov., an actinobacterium isolated from rhizosphere soil, and emended description of the genus Frondihabitans Greene et al. 2009. Int J Syst Evol Microbiol 60, 1740-1744.
20. MacKenzie, S. L. (1984). Amino acids and peptides. In Gas Chromatography/Mass Spectrometry Applications in Microbiology, pp. 157-204. Edited by G. Odham, L. Larsson & P. Mardh. New York: Plenum.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Miller, J. A., Kalyuzhnaya, M. G., Noyes, E., Lara, J. C., Lidstrom, M. E. & Chistoserdova, L. (2005). Labrys methylaminiphilus sp. nov., a novel facultatively methylotrophic bacterium from a freshwater lake sediment. Int J Syst Evol Microbiol 55, 1247-1253.
23. Rzhetsky, A. & Nei, M. (1993). Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol Biol Evol 10, 1073-1095.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
26. Schneider, T., Schmid, E., de Castro, J. V., Jr, Cardinale, M., Eberl, L., Grube, M., Berg, G. & Riedel, K. (2011). Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics. Proteomics 11, 2752-2756.
27. Schumann, P., Kämpfer, P., Busse, H. J., Evtushenko, L. I. & Subcommittee on the Taxonomy of the Suborder Micrococcineae of the International Committee on Systematics of Prokaryotes (2009). Proposed minimal standards for describing new genera and species of the suborder Micrococcineae. Int J Syst Evol Microbiol 59, 1823-1849.
28. Selbmann, L., Zucconi, L., Ruisi, S., Grube, M., Cardinale, M. & Onofri, S. (2010). Culturable bacteria associated with Antarctic lichens: affiliation and psychrotolerance. Polar Biol 33, 71-83.
29. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
30. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
31. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
32. Tindall, B. J., Kämpfer, P., Euzéby, J. P. & Oren, A. (2006). Valid publication of names of prokaryotes according to the rules of nomenclature: past history and current practice. Int J Syst Evol Microbiol 56, 2715-2720.
33. Tittsler, R. P. & Sandholzer, L. A. (1936). The use of semi-solid agar for the detection of bacterial motility. J Bacteriol 31, 575-580.
34. Zhang, L., Xu, Z. & Patel, B. K. C. (2007). Frondicola australicus gen. nov., sp. nov., isolated from decaying leaf litter from a pine forest. Int J Syst Evol Microbiol 57, 1177-1182.