-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
P.D. Adams, P.V. Afonine, G. Bunkóczi, V.B. Chen, I.W. Davis, N. Echols, J.J. Headd, L.W. Hung, G.J. Kapral, and R.W. Grosse-Kunstleve PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallogr. D Biol. Crystallogr. 66 2010 213 221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
2
-
-
55549116661
-
Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene
-
J.R. Anthony, L.C. Anthony, F. Nowroozi, G. Kwon, J.D. Newman, and J.D. Keasling Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene Metab. Eng. 11 2009 13 19
-
(2009)
Metab. Eng.
, vol.11
, pp. 13-19
-
-
Anthony, J.R.1
Anthony, L.C.2
Nowroozi, F.3
Kwon, G.4
Newman, J.D.5
Keasling, J.D.6
-
3
-
-
0032499684
-
Terpenoid-based defenses in conifers: CDNA cloning, characterization, and functional expression of wound-inducible (E)-α-bisabolene synthase from grand fir (Abies grandis)
-
DOI 10.1073/pnas.95.12.6756
-
J. Bohlmann, J. Crock, R. Jetter, and R. Croteau Terpenoid-based defenses in conifers: cDNA cloning, characterization, and functional expression of wound-inducible (E)-alpha-bisabolene synthase from grand fir (Abies grandis) Proc. Natl. Acad. Sci. USA 95 1998 6756 6761 (Pubitemid 28278053)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.12
, pp. 6756-6761
-
-
Bohlmann, J.1
Crock, J.2
Jetter, R.3
Croteau, R.4
-
4
-
-
0033583552
-
Trichodiene synthase: Mechanism-based inhibition of a sesquiterpene cyclase
-
DOI 10.1016/S0960-894X(99)00149-3, PII S0960894X99001493
-
D.E. Cane, and T.E. Bowser). Trichodie synthase: mechanism-based inhibition of a sesquiterpene cyclase Bioorg. Med. Chem. Lett. 9 1999 1127 1132 (Pubitemid 29204670)
-
(1999)
Bioorganic and Medicinal Chemistry Letters
, vol.9
, Issue.8
, pp. 1127-1132
-
-
Cane, D.E.1
Bowser, T.E.2
-
5
-
-
0028954378
-
Trichodienesynthases. Subtrate specificity and inhibition
-
D.E. Cane, G. Yang, Q. Xue, and J.H. Shim Trichodienesynthases. Subtrate specificity and inhibition Biochemistry 34 1995 2471 2479
-
(1995)
Biochemistry
, vol.34
, pp. 2471-2479
-
-
Cane, D.E.1
Yang, G.2
Xue, Q.3
Shim, J.H.4
-
6
-
-
79953251042
-
The family of terpene synthases in plants: A mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom
-
F. Chen, D. Tholl, J. Bohlmann, and E. Pichersky The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom Plant J. 66 2011 212 229
-
(2011)
Plant J.
, vol.66
, pp. 212-229
-
-
Chen, F.1
Tholl, D.2
Bohlmann, J.3
Pichersky, E.4
-
7
-
-
33748601470
-
Structural biology and chemistry of the terpenoid cyclases
-
DOI 10.1021/cr050286w
-
D.W. Christianson Structural biology and chemistry of the terpenoid cyclase Chem. Rev. 106 2006 3412 3442 (Pubitemid 44376943)
-
(2006)
Chemical Reviews
, vol.106
, Issue.8
, pp. 3412-3442
-
-
Christianson, D.W.1
-
8
-
-
0037042498
-
Treatment of postmenopausal osteoporosis
-
DOI 10.1016/S0140-6736(02)08827-X
-
P.D. Delmas Treatment of postmenopausal osteoporosis Lancet 359 2002 2018 2026 (Pubitemid 34663722)
-
(2002)
Lancet
, vol.359
, Issue.9322
, pp. 2018-2026
-
-
Delmas, P.D.1
-
9
-
-
48249102000
-
Phylogeny.fr: Robust phylogenetic analysis for the non-specialist
-
A. Dereeper, V. Guignon, G. Blanc, S. Audic, S. Buffet, F. Chevenet, J.F. Dufayard, S. Guindon, V. Lefort, and M. Lescot Phylogeny.fr: robust phylogenetic analysis for the non-specialist Nucleic Acids Res. 36 Web Server issue 2008 W465 W469
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.WEB SERVER ISSUE
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
Audic, S.4
Buffet, S.5
Chevenet, F.6
Dufayard, J.F.7
Guindon, S.8
Lefort, V.9
Lescot, M.10
-
10
-
-
0035146537
-
Structure-activity relationships for inhibition of farnesyl diphosphate synthase in vitro and inhibition of bone resorption in vivo by nitrogen-containing bisphosphonates
-
J.E. Dunford, K. Thompson, F.P. Coxon, S.P. Luckman, F.M. Hahn, C.D. Poulter, F.H. Ebetino, and M.J. Rogers Structure-activity relationships for inhibition of farnesyl diphosphate synthase in vitro and inhibition of bone resorption in vivo by nitrogen-containing bisphosphonates J. Pharmacol. Exp. Ther. 296 2001 235 242 (Pubitemid 32112446)
-
(2001)
Journal of Pharmacology and Experimental Therapeutics
, vol.296
, Issue.2
, pp. 235-242
-
-
Dunford, J.E.1
Thompson, K.2
Coxon, F.P.3
Luckman, S.P.4
Hahn, F.M.5
Poulter, C.D.6
Ebetino, F.H.7
Rogers, M.J.8
-
11
-
-
0032935861
-
ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites
-
O. Emanuelsson, H. Nielsen, and G. von Heijne ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites Protein Sci. 8 1999 978 984 (Pubitemid 29211735)
-
(1999)
Protein Science
, vol.8
, Issue.5
, pp. 978-984
-
-
Emanuelsson, O.1
Nielsen, H.2
Von Heijne, G.3
-
13
-
-
67650088878
-
Crystal structure of (+)-delta-cadinene synthase from Gossypium arboreum and evolutionary divergence of metal binding motifs for catalysis
-
H.A. Gennadios, V. Gonzalez, L. Di Costanzo, A. Li, F. Yu, D.J. Miller, R.K. Allemann, and D.W. Christianson Crystal structure of (+)-delta-cadinene synthase from Gossypium arboreum and evolutionary divergence of metal binding motifs for catalysis Biochemistry 48 2009 6175 6183
-
(2009)
Biochemistry
, vol.48
, pp. 6175-6183
-
-
Gennadios, H.A.1
Gonzalez, V.2
Di Costanzo, L.3
Li, A.4
Yu, F.5
Miller, D.J.6
Allemann, R.K.7
Christianson, D.W.8
-
14
-
-
77149168163
-
High-density renewable fuels based on the selective dimerization of pinenes
-
B.G. Harvey, M.E. Wright, and R.L. Quintana High-density renewable fuels based on the selective dimerization of pinenes Energy Fuels 24 2010 267 273
-
(2010)
Energy Fuels
, vol.24
, pp. 267-273
-
-
Harvey, B.G.1
Wright, M.E.2
Quintana, R.L.3
-
15
-
-
0026206788
-
Sparse matrix sampling. A screening method for crystallization of proteins
-
DOI 10.1107/S0021889891004430
-
J. Jancarik, and S.H. Kim Sparse-matrix sampling: a screening method for crystallization of proteins J. Appl. Crystallogr. 24 1991 409 411 (Pubitemid 21679358)
-
(1991)
Journal of Applied Crystallography
, vol.24
, Issue.PART 4
, pp. 409-411
-
-
Jancarik Jarmila1
Kim Sung-Hou2
-
16
-
-
38949096144
-
Functional plasticity of paralogous diterpene synthases involved in conifer defense
-
C.I. Keeling, S. Weisshaar, R.P. Lin, and J. Bohlmann Functional plasticity of paralogous diterpene synthases involved in conifer defense Proc. Natl. Acad. Sci. USA 105 2008 1085 1090
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 1085-1090
-
-
Keeling, C.I.1
Weisshaar, S.2
Lin, R.P.3
Bohlmann, J.4
-
17
-
-
79958737075
-
The primary diterpene synthase products of Picea abies levopimaradiene/abietadiene synthase (PaLAS) are epimers of a thermally unstable diterpenol
-
C.I. Keeling, L.L. Madilao, P. Zerbe, H.K. Dullat, and J. Bohlmann The primary diterpene synthase products of Picea abies levopimaradiene/abietadiene synthase (PaLAS) are epimers of a thermally unstable diterpenol J. Biol. Chem. 286 2011 21145 21153
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 21145-21153
-
-
Keeling, C.I.1
Madilao, L.L.2
Zerbe, P.3
Dullat, H.K.4
Bohlmann, J.5
-
18
-
-
67651030513
-
Biosynthesis of plant isoprenoids: Perspectives for microbial engineering
-
J. Kirby, and J.D. Keasling Biosynthesis of plant isoprenoids: perspectives for microbial engineering Annu. Rev. Plant Biol. 60 2009 335 355
-
(2009)
Annu. Rev. Plant Biol.
, vol.60
, pp. 335-355
-
-
Kirby, J.1
Keasling, J.D.2
-
19
-
-
78650991785
-
Taxadiene synthase structure and evolution of modular architecture in terpene biosynthesis
-
M. Köksal, Y. Jin, R.M. Coates, R. Croteau, and D.W. Christianson Taxadiene synthase structure and evolution of modular architecture in terpene biosynthesis Nature 469 2011 116 120
-
(2011)
Nature
, vol.469
, pp. 116-120
-
-
Köksal, M.1
Jin, Y.2
Coates, R.M.3
Croteau, R.4
Christianson, D.W.5
-
20
-
-
79959374838
-
Structure and mechanism of the diterpene cyclase ent-copalyl diphosphate synthase
-
M. Köksal, H. Hu, R.M. Coates, R.J. Peters, and D.W. Christianson Structure and mechanism of the diterpene cyclase ent-copalyl diphosphate synthase Nat. Chem. Biol. 7 2011 431 433
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 431-433
-
-
Köksal, M.1
Hu, H.2
Coates, R.M.3
Peters, R.J.4
Christianson, D.W.5
-
21
-
-
4243200485
-
Management of Paget's disease of bone
-
DOI 10.1093/rheumatology/keh243
-
A.L. Langston, and S.H. Ralston Management of Paget's disease of bone Rheumatology (Oxford) 43 2004 955 959 (Pubitemid 39144439)
-
(2004)
Rheumatology
, vol.43
, Issue.8
, pp. 955-959
-
-
Langston, A.L.1
Ralston, S.H.2
-
22
-
-
57049098094
-
Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels
-
S.K. Lee, H. Chou, T.S. Ham, T.S. Lee, and J.D. Keasling Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels Curr. Opin. Biotechnol. 19 2008 556 563
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 556-563
-
-
Lee, S.K.1
Chou, H.2
Ham, T.S.3
Lee, T.S.4
Keasling, J.D.5
-
23
-
-
0030777210
-
Crystal structure of pentalenene synthase: Mechanistic insights on terpenoid cyclization reactions in biology
-
DOI 10.1126/science.277.5333.1820
-
C.A. Lesburg, G. Zhai, D.E. Cane, and D.W. Christianson Crystal structure of pentalenene synthase: mechanistic insights on terpenoid cyclization reactions in biology Science 277 1997 1820 1824 (Pubitemid 27449193)
-
(1997)
Science
, vol.277
, Issue.5333
, pp. 1820-1824
-
-
Lesburg, C.A.1
Zhai, G.2
Cane, D.E.3
Christianson, D.W.4
-
24
-
-
0036612683
-
Alteration of product formation by directed mutagenesis and truncation of the multiple-product sesquiterpene synthases δ-selinene synthase and γ-humulene synthase
-
DOI 10.1016/S0003-9861(02)00068-1, PII S0003986102000681
-
D.B. Little, and R.B. Croteau Alteration of product formation by directed mutagenesis and truncation of the multiple-product sesquiterpene synthases delta-selinene synthase and gamma-humulene synthase Arch. Biochem. Biophys. 402 2002 120 135 (Pubitemid 34848301)
-
(2002)
Archives of Biochemistry and Biophysics
, vol.402
, Issue.1
, pp. 120-135
-
-
Little, D.B.1
Croteau, R.B.2
-
25
-
-
78650333770
-
Selectivity of fungal sesquiterpene synthases: Role of the active site's H-1 alpha loop in catalysis
-
F. López-Gallego, G.T. Wawrzyn, and C. Schmidt-Dannert Selectivity of fungal sesquiterpene synthases: role of the active site's H-1 alpha loop in catalysis Appl. Environ. Microbiol. 76 2010 7723 7733
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 7723-7733
-
-
López-Gallego, F.1
Wawrzyn, G.T.2
Schmidt-Dannert, C.3
-
26
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326 (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
27
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
J. Painter, and E.A. Merritt Optimal description of a protein structure in terms of multiple groups undergoing TLS motion Acta Crystallogr. D Biol. Crystallogr. 62 2006 439 450
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
28
-
-
33645158291
-
TLSMD web server for the generation of multi-group TLS models
-
J. Painter, and E.A. Merritt TLSMD web server for the generation of multi-group TLS models J. Appl. Crystallogr. 39 2006 109 111
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 109-111
-
-
Painter, J.1
Merritt, E.A.2
-
29
-
-
23844492576
-
Auto-Rickshaw: An automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment
-
DOI 10.1107/S0907444905001307
-
S. Panjikar, V. Parthasarathy, V.S. Lamzin, M.S. Weiss, and P.A. Tucker Auto-Rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment Acta Crystallogr. D Biol. Crystallogr. 61 2005 449 457 (Pubitemid 43934605)
-
(2005)
Acta Crystallographica Section D: Biological Crystallography
, vol.61
, Issue.4
, pp. 449-457
-
-
Panjikar, S.1
Parthasarathy, V.2
Lamzin, V.S.3
Weiss, M.S.4
Tucker, P.A.5
-
30
-
-
70349602499
-
On the combination of molecular replacement and single-wavelength anomalous diffraction phasing for automated structure determination
-
S. Panjikar, V. Parthasarathy, V.S. Lamzin, M.S. Weiss, and P.A. Tucker On the combination of molecular replacement and single-wavelength anomalous diffraction phasing for automated structure determination Acta Crystallogr. D Biol. Crystallogr. 65 2009 1089 1097
-
(2009)
Acta Crystallogr. D Biol. Crystallogr.
, vol.65
, pp. 1089-1097
-
-
Panjikar, S.1
Parthasarathy, V.2
Lamzin, V.S.3
Weiss, M.S.4
Tucker, P.A.5
-
32
-
-
80053412686
-
Identification and microbial production of a terpene-based advanced biofuel
-
10.1038/ncomms1494
-
P.P. Peralta-Yahya, M. Ouellet, R. Chan, M. Mukhopadhyay, J. Keasling, and T.S. Lee Identification and microbial production of a terpene-based advanced biofuel Nat. Commun. 2 2011 483 10.1038/ncomms1494
-
(2011)
Nat. Commun.
, vol.2
, pp. 483
-
-
Peralta-Yahya, P.P.1
Ouellet, M.2
Chan, R.3
Mukhopadhyay, M.4
Keasling, J.5
Lee, T.S.6
-
35
-
-
0030796451
-
Structural basis for cyclic terpene biosynthesis by tobacco 5-epi- aristolochene synthase
-
DOI 10.1126/science.277.5333.1815
-
C.M. Starks, K. Back, J. Chappell, and J.P. Noel Structural basis for cyclic terpene biosynthesis by tobacco 5-epi-aristolochene synthase Science 277 1997 1815 1820 (Pubitemid 27449192)
-
(1997)
Science
, vol.277
, Issue.5333
, pp. 1815-1820
-
-
Starks, C.M.1
Back, K.2
Chappell, J.3
Noel, J.P.4
-
36
-
-
0031891866
-
Sesquiterpene synthases from grand fir (Abies grandis): Comparison of constitutive and wound-induced activities, and cDNA isolation, characterization, and bacterial expression of δ-selinene synthase and γ- humulene synthase
-
DOI 10.1074/jbc.273.4.2078
-
C.L. Steele, J. Crock, J. Bohlmann, and R. Croteau Sesquiterpene synthases from grand fir (Abies grandis). Comparison of constitutive and wound-induced activities, and cDNA isolation, characterization, and bacterial expression of delta-selinene synthase and gamma-humulene synthase J. Biol. Chem. 273 1998 2078 2089 (Pubitemid 28069256)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.4
, pp. 2078-2089
-
-
Steele, C.L.1
Crock, J.2
Bohlmann, J.3
Croteau, R.4
-
37
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
F.W. Studier Protein production by auto-induction in high density shaking cultures Protein Expr. Purif. 41 2005 207 234
-
(2005)
Protein Expr. Purif.
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
38
-
-
0028145239
-
Crystal structure of recombinant farnesyl diphosphate synthase at 2.6-A resolution
-
L.C. Tarshis, M. Yan, C.D. Poulter, and J.C. Sacchettini Crystal structure of recombinant farnesyl diphosphate synthase at 2.6- resolution Biochemistry 33 1994 10871 10877 (Pubitemid 24296339)
-
(1994)
Biochemistry
, vol.33
, Issue.36
, pp. 10871-10877
-
-
Tarshis, L.C.1
Yan, M.2
Poulter, C.D.3
Sacchettini, J.C.4
-
39
-
-
66249112826
-
Decision-making in structure solution using Bayesian estimates of map quality: The PHENIX AutoSol wizard
-
T.C. Terwilliger, P.D. Adams, R.J. Read, A.J. McCoy, N.W. Moriarty, R.W. Grosse-Kunstleve, P.V. Afonine, P.H. Zwart, and L.W. Hung Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard Acta Crystallogr. D Biol. Crystallogr. 65 2009 582 601
-
(2009)
Acta Crystallogr. D Biol. Crystallogr.
, vol.65
, pp. 582-601
-
-
Terwilliger, T.C.1
Adams, P.D.2
Read, R.J.3
McCoy, A.J.4
Moriarty, N.W.5
Grosse-Kunstleve, R.W.6
Afonine, P.V.7
Zwart, P.H.8
Hung, L.W.9
-
40
-
-
0034980234
-
Genomic organization of plant terpene synthases and molecular evolutionary implications
-
S.C. Trapp, and R.B. Croteau Genomic organization of plant terpene synthases and molecular evolutionary implications Genetics 158 2001 811 832 (Pubitemid 32564882)
-
(2001)
Genetics
, vol.158
, Issue.2
, pp. 811-832
-
-
Trapp, S.C.1
Croteau, R.B.2
-
41
-
-
0033554651
-
Farnesyl pyrophosphate synthase is the molecular target of nitrogen-containing bisphosphonates
-
DOI 10.1006/bbrc.1999.1499
-
E. van Beek, E. Pieterman, L. Cohen, C. Löwik, and S. Papapoulos Farnesyl pyrophosphate synthase is the molecular target of nitrogen-containing bisphosphonates Biochem. Biophys. Res. Commun. 264 1999 108 111 (Pubitemid 29500472)
-
(1999)
Biochemical and Biophysical Research Communications
, vol.264
, Issue.1
, pp. 108-111
-
-
Van Beek, E.1
Pieterman, E.2
Cohen, L.3
Lowik, C.4
Papapoulos, S.5
-
42
-
-
0000828106
-
Abietadiene synthase from grand fir (Abies grandis) cDNA isolation, characterization, and bacterial expression of a bifunctional diterpene cyclase involved in resin acid biosynthesis
-
DOI 10.1074/jbc.271.38.23262
-
B.S. Vogel, M.R. Wildung, G. Vogel, and R.B. Croteau Abietadiene synthase from grand fir (Abies grandis). cDNA isolation, characterization, and bacterial expression of a bifunctional diterpene cyclase involved in resin acid biosynthesis J. Biol. Chem. 271 1996 23262 23268 (Pubitemid 26314767)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.38
, pp. 23262-23268
-
-
Vogel, B.S.1
Wildling, M.R.2
Vogel, G.3
Croteaull, R.4
-
43
-
-
0030769202
-
Structure and function of a squalene cyclase
-
DOI 10.1126/science.277.5333.1811
-
K.U. Wendt, K. Poralla, and G.E. Schulz Structure and function of a squalene cyclase Science 277 1997 1811 1815 (Pubitemid 27449191)
-
(1997)
Science
, vol.277
, Issue.5333
, pp. 1811-1815
-
-
Wendt, K.U.1
Poralla, K.2
Schulz, G.E.3
-
44
-
-
0037180538
-
Bornyl diphosphate synthase: Structure and strategy for carbocation manipulation by a terpenoid cyclase
-
DOI 10.1073/pnas.232591099
-
D.A. Whittington, M.L. Wise, M. Urbansky, R.M. Coates, R.B. Croteau, and D.W. Christianson Bornyl diphosphate synthase: structure and strategy for carbocation manipulation by a terpenoid cyclase Proc. Natl. Acad. Sci. USA 99 2002 15375 15380 (Pubitemid 35403942)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.24
, pp. 15375-15380
-
-
Whittington, D.A.1
Wise, M.L.2
Urbansky, M.3
Coates, R.M.4
Croteau, R.B.5
Christianson, D.W.6
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