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Volumn 11, Issue 8, 2011, Pages 1957-1963

Phylogeny and homologous recombination in Chikungunya viruses

Author keywords

Chikungunya virus; Homologous recombination; Phylogeny

Indexed keywords

AFRICA; ARTICLE; ASIA; BOOTSTRAPPING; CHIKUNGUNYA ALPHAVIRUS; CONTROLLED STUDY; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; GEOGRAPHIC ORIGIN; HOMOLOGOUS RECOMBINATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; VIRUS GENOME;

EID: 82655173838     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2011.08.026     Document Type: Article
Times cited : (15)

References (36)
  • 3
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • Boni M.F., Posada D., Feldman M.W. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 2007, 176:1035-1047.
    • (2007) Genetics , vol.176 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 4
    • 77956283448 scopus 로고    scopus 로고
    • Guidelines for identifying homologous recombination events in influenza A virus
    • Boni M.F., de Jong M.D., van Doorn H.R., Holmes E.C. Guidelines for identifying homologous recombination events in influenza A virus. PLoS ONE 2010, 5:e10434.
    • (2010) PLoS ONE , vol.5
    • Boni, M.F.1    de Jong, M.D.2    van Doorn, H.R.3    Holmes, E.C.4
  • 5
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen T.C., Philippe H., Bryant D. A simple and robust statistical test for detecting the presence of recombination. Genetics 2006, 172:2665-2681.
    • (2006) Genetics , vol.172 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 6
    • 33645972304 scopus 로고    scopus 로고
    • A phylogenetic survey of recombination frequency in plant RNA viruses
    • Chare E.R., Holmes E.C. A phylogenetic survey of recombination frequency in plant RNA viruses. Arch. Virol. 2006, 151:933-946.
    • (2006) Arch. Virol. , vol.151 , pp. 933-946
    • Chare, E.R.1    Holmes, E.C.2
  • 7
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 8
    • 0033753825 scopus 로고    scopus 로고
    • Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs M.J., Armstrong J.S., Gibbs A.J. Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 2000, 16:573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 9
    • 0014600226 scopus 로고
    • Dengue and Chikungunya virus infection in man in Thailand, 1962-1964. IV. Epidemiologic studies in the Bangkok metropolitan area
    • Halstead S.B., Scanlon J.E., Umpaivit P., Udomsakdi S. Dengue and Chikungunya virus infection in man in Thailand, 1962-1964. IV. Epidemiologic studies in the Bangkok metropolitan area. Am. J. Trop. Med. Hyg. 1969, 18:997-1021.
    • (1969) Am. J. Trop. Med. Hyg. , vol.18 , pp. 997-1021
    • Halstead, S.B.1    Scanlon, J.E.2    Umpaivit, P.3    Udomsakdi, S.4
  • 10
    • 0014603068 scopus 로고
    • Dengue and Chikungunya virus infection in man in Thailand, 1962-1964. V. Epidemiologic observations outside Bangkok
    • Halstead S.B., Udomsakdi S., Scanlon J.E., Rohitayodhin S. Dengue and Chikungunya virus infection in man in Thailand, 1962-1964. V. Epidemiologic observations outside Bangkok. Am. J. Trop. Med. Hyg. 1969, 18:1022-1033.
    • (1969) Am. J. Trop. Med. Hyg. , vol.18 , pp. 1022-1033
    • Halstead, S.B.1    Udomsakdi, S.2    Scanlon, J.E.3    Rohitayodhin, S.4
  • 11
    • 34248232907 scopus 로고    scopus 로고
    • Evidence of natural recombination in classical swine fever virus
    • He C.Q., Ding N.Z., Chen J.G., Li Y.L. Evidence of natural recombination in classical swine fever virus. Virus Res. 2007, 126:179-185.
    • (2007) Virus Res. , vol.126 , pp. 179-185
    • He, C.Q.1    Ding, N.Z.2    Chen, J.G.3    Li, Y.L.4
  • 12
    • 0031729863 scopus 로고    scopus 로고
    • Molecular epidemiology of dengue virus - the time for big science
    • Holmes E.C. Molecular epidemiology of dengue virus - the time for big science. Tropical Med. Int. Health 1998, 3:855-856.
    • (1998) Tropical Med. Int. Health , vol.3 , pp. 855-856
    • Holmes, E.C.1
  • 13
    • 0033021298 scopus 로고    scopus 로고
    • Phylogenetic evidence for recombination in dengue virus
    • Holmes E.C., Worobey M., Rambaut A. Phylogenetic evidence for recombination in dengue virus. Mol. Biol. Evol. 1999, 16:405-409.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 405-409
    • Holmes, E.C.1    Worobey, M.2    Rambaut, A.3
  • 15
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23:254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 16
    • 0000113157 scopus 로고    scopus 로고
    • Alphaviruses associated primarily with fever and polyarthritis
    • Lippincott-Raven Publishers, Philadelphia, B.N. Fields, D.M. Knipe, P.M. Howley (Eds.)
    • Johnston R.E., Peters C.J. Alphaviruses associated primarily with fever and polyarthritis. Fields Virology 1996, 843-898. Lippincott-Raven Publishers, Philadelphia. B.N. Fields, D.M. Knipe, P.M. Howley (Eds.).
    • (1996) Fields Virology , pp. 843-898
    • Johnston, R.E.1    Peters, C.J.2
  • 18
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin D., Rybicki E. RDP: detection of recombination amongst aligned sequences. Bioinformatics 2000, 16:562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 19
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • Martin D.P., Posada D., Crandall K.A., Williamson C. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res. Hum. Retrovir. 2005, 21:98-102.
    • (2005) AIDS Res. Hum. Retrovir. , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 20
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: recombination detection and analysis from sequence alignments
    • Martin D.P., Williamson C., Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 2005, 21:260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 22
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam M., Sawyer S., Fauquet C.M. Possible emergence of new geminiviruses by frequent recombination. Virology 1999, 265:218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 23
    • 70350344982 scopus 로고    scopus 로고
    • Recombination in West Nile Virus: minimal contribution to genomic diversity
    • Pickett B.E., Lefkowitz E.J. Recombination in West Nile Virus: minimal contribution to genomic diversity. Virol. J. 2009, 6:165.
    • (2009) Virol. J. , vol.6 , pp. 165
    • Pickett, B.E.1    Lefkowitz, E.J.2
  • 24
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: computer simulations
    • Posada D., Crandall K.A. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. USA 2001, 98:13757-13762.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 25
    • 0033959551 scopus 로고    scopus 로고
    • Reemergence of chikungunya and o'nyong-nyong viruses: evidence for distinct geographical lineages and distant evolutionary relationships
    • Powers A.M., Brault A.C., Tesh R.B., Weaver S.C. Reemergence of chikungunya and o'nyong-nyong viruses: evidence for distinct geographical lineages and distant evolutionary relationships. J. Gen. Virol. 2000, 81:471-479.
    • (2000) J. Gen. Virol. , vol.81 , pp. 471-479
    • Powers, A.M.1    Brault, A.C.2    Tesh, R.B.3    Weaver, S.C.4
  • 26
    • 0000544978 scopus 로고
    • Recent epidemics caused by Chikungunya virus in India, 1963-1965
    • Rao T.R. Recent epidemics caused by Chikungunya virus in India, 1963-1965. Sci. Culture 1966, 32:215.
    • (1966) Sci. Culture , vol.32 , pp. 215
    • Rao, T.R.1
  • 28
    • 78651181856 scopus 로고
    • The Newala epidemic. III. The virus: isolation, pathogenic properties and relationship to the epidemic
    • Ross R.W. The Newala epidemic. III. The virus: isolation, pathogenic properties and relationship to the epidemic. J. Hyg. 1956, 54:177-191.
    • (1956) J. Hyg. , vol.54 , pp. 177-191
    • Ross, R.W.1
  • 30
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith J.M. Analyzing the mosaic structure of genes. J. Mol. Evol. 1992, 34:126-129.
    • (1992) J. Mol. Evol. , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 31
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 33
  • 34
    • 0031892518 scopus 로고    scopus 로고
    • Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences
    • Weiller G.F. Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol. Biol. Evol. 1998, 15:326-335.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 326-335
    • Weiller, G.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.