Evidence of natural recombination in classical swine fever virus

Virus Research

Volumn 126, Issue 1-2, 2007, Pages 179-185

  He, Cheng Qiang ^a   Ding, Nai Zheng ^b,c   Chen, Jian Guo ^b   Li, Yun Long ^a  

^a SHANDONG NORMAL UNIVERSITY   (China)

^b PEKING UNIVERSITY   (China)

^c CENTRAL SOUTH UNIVERSITY   (China)

Author keywords

Classical swine fever virus; Homologous recombination

Indexed keywords

ARTICLE; CHINA; GENETIC VARIABILITY; HOMOLOGOUS RECOMBINATION; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PESTIVIRUS; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SWINE DISEASE; VIRUS ISOLATION; VIRUS RECOMBINATION; VIRUS STRAIN;

ANIMALS; BASE SEQUENCE; CHINA; CLASSICAL SWINE FEVER; CLASSICAL SWINE FEVER VIRUS; DNA, VIRAL; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; MOSAICISM; PHYLOGENY; RECOMBINATION, GENETIC; SEQUENCE HOMOLOGY, NUCLEIC ACID; SWINE;

CLASSICAL SWINE FEVER VIRUS; CLASSICAL SWINE FEVER VIRUS 39; FLAVIVIRIDAE; SUIDAE;

EID: 34248232907     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2007.02.019     Document Type: Article

References (41)

1. Becher P., Orlich M., and Thiel H.J. RNA recombination between persisting pestivirus and a vaccine strain: generation of cytopathogenic virus and induction of lethal disease. J. Virol. 75 14 (2001) 6256-6264
2. Blacksell S.D., Khounsy S., Boyle D.B., Gleeson L.J., Westbury H.A., and Mackenzie J.S. Genetic typing of classical swine fever viruses from Lao PDR by analysis of the 5′ non-coding region. Virus Genes 31 3 (2005) 349-355
3. Desport M., Collins M.E., and Brownlie J. Genome instability in BVDV: an examination of the sequence and structural influences on RNA recombination. Virology 246 2 (1998) 352-361
4. Gallei A., Rumenapf T., Thiel H.J., and Becher P. Characterization of helper virus-independent cytopathogenic classical swine fever virus generated by an in vivo RNA recombination system. J. Virol. 79 4 (2005) 2440-2448
5. Grebennikova T.V., Zaberezhnyi A.D., Sergeev V.A., Biketov S.F., Aliper T.I., and Nepoklonov E.A. Genetic characteristics of the KC vaccine strain of hog cholera virus: comparative analysis of the primary sequence of surface glycoprotein E(rns), E1, and E2 genes. Mol. Gen. Mikrobiol. Virusol. 2 (1999) 34-40
6. Holmes E.C., Worobey M., and Rambaut A. Phylogenetic evidence for recombination in dengue virus. Mol. Biol. Evol. 16 3 (1999) 405-409
7. Ishikawa K., Nagai H., Katayama K., Tsutsui M., Tanabayashi K., Takeuchi K., Hishiyama M., Saitoh A., Takagi M., Gotoh K., et al. Comparison of the entire nucleotide and deduced amino acid sequences of the attenuated hog cholera vaccine strain GPE- and the wild-type parental strain ALD. Arch. Virol. 140 8 (1995) 1385-1391
8. Jemersic L., Greiser-Wilke I., Barlic-Maganja D., Lojkic M., Madic J., Terzic S., and Grom J. Genetic typing of recent classical swine fever virus isolates from Croatia. Vet. Microbiol. 96 1 (2003) 25-33
9. Kalinina O., Norder H., Mukomolov S., and Magnius L.O. A natural intergenotypic recombinant of hepatitis C virus identified in St. Petersburg. J. Virol. 76 8 (2002) 4034-4043
10. Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 2 (2004) 150-163
11. Li X., Xu Z., He Y., Yao Q., Zhang K., Jin M., Chen H., and Qian P. Genome comparison of a novel classical swine fever virus isolated in China in 2004 with other CSFV strains. Virus Genes 33 2 (2006) 133-142
12. Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., and Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73 1 (1999) 152-160
13. Lowings J.P., Paton D.J., Sands J.J., De Mia G.M., and Rutili D. Classical swine fever: genetic detection and analysis of differences between virus isolates. J. Gen. Virol. 75 Pt 12 (1994) 3461-3468
14. Mayer D., Thayer T.M., Hofmann M.A., and Tratschin J.D. Establishment and characterisation of two cDNA-derived strains of classical swine fever virus, one highly virulent and one avirulent. Virus Res. 98 2 (2003) 105-116
15. Meyers G., Rumenapf T., and Thiel H.J. Molecular cloning and nucleotide sequence of the genome of hog cholera virus. Virology 171 2 (1989) 555-567
16. Moennig V. Introduction to classical swine fever: virus, disease and control policy. Vet. Microbiol. 73 2-3 (2000) 93-102
17. Moennig V., and Plagemann P.G. The pestiviruses. Adv. Virus Res. 41 (1992) 53-98
18. Moormann R.J., Warmerdam P.A., van der Meer B., Schaaper W.M., Wensvoort G., and Hulst M.M. Molecular cloning and nucleotide sequence of hog cholera virus strain Brescia and mapping of the genomic region encoding envelope protein E1. Virology 177 1 (1990) 184-198
19. Moormann R.J., van Gennip H.G., Miedema G.K., Hulst M.M., and van Rijn P.A. Infectious RNA transcribed from an engineered full-length cDNA template of the genome of a pestivirus. J. Virol. 70 2 (1996) 763-770
20. Nie Y., Ke Y., Chen J., and Ding M. Construction of the full-length cDNA clone of Chinese virulent strain-F114. Wei. Sheng. Wu. Xue. Bao. 41 4 (2001) 452-456
21. Paton D.J., McGoldrick A., Greiser-Wilke I., Parchariyanon S., Song J.Y., Liou P.P., Stadejek T., Lowings J.P., Bjorklund H., and Belak S. Genetic typing of classical swine fever virus. Vet. Microbiol. 73 2-3 (2000) 137-157
22. Posada D., and Crandall K.A. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. U.S.A. 98 24 (2001) 13757-13762
23. Ridpath J.F., Qi F., Bolin S.R., and Berry E.S. Natural recombination in bovine viral diarrhea viruses. Arch. Virol. Suppl. 9 (1994) 239-244
24. Risatti G.R., Borca M.V., Kutish G.F., Lu Z., Holinka L.G., French R.A., Tulman E.R., and Rock D.L. The E2 glycoprotein of classical swine fever virus is a virulence determinant in swine. J. Virol. 79 6 (2005) 3787-3796
25. Risatti G.R., Holinka L.G., Lu Z., Kutish G.F., Tulman E.R., French R.A., Sur J.H., Rock D.L., and Borca M.V. Mutation of E1 glycoprotein of classical swine fever virus affects viral virulence in swine. Virology 343 1 (2005) 116-127
26. Ruggli N., Moser C., Mitchell D., Hofmann M., and Tratschin J.D. Baculovirus expression and affinity purification of protein E2 of classical swine fever virus strain Alfort/187. Virus Genes 10 2 (1995) 115-126
27. Ruggli N., Tratschin J.D., Schweizer M., McCullough K.C., Hofmann M.A., and Summerfield A. Classical swine fever virus interferes with cellular antiviral defense: evidence for a novel function of N(pro). J. Virol. 77 13 (2003) 7645-7654
28. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 4 (1987) 406-425
29. Salminen M.O., Carr J.K., Burke D.S., and McCutchan F.E. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res. Hum. Retroviruses 11 11 (1995) 1423-1425
30. Stadejek T., Vilcek S., Lowings J.P., Ballagi-Pordany A., Paton D.J., and Belak S. Genetic heterogeneity of classical swine fever virus in Central Europe. Virus Res. 52 2 (1997) 195-204
31. Thiel H.J., Stark R., Weiland E., Rumenapf T., and Meyers G. Hog cholera virus: molecular composition of virions from a pestivirus. J. Virol. 65 9 (1991) 4705-4712
32. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 22 (1994) 4673-4680
33. Tolou H.J., Couissinier-Paris P., Durand J.P., Mercier V., de Pina J.J., de Micco P., Billoir F., Charrel R.N., and de Lamballerie X. Evidence for recombination in natural populations of dengue virus type 1 based on the analysis of complete genome sequences. J. Gen. Virol. 82 Pt 6 (2001) 1283-1290
34. Tu C., Lu Z., Li H., Yu X., Liu X., Li Y., Zhang H., and Yin Z. Phylogenetic comparison of classical swine fever virus in China. Virus Res. 81 1-2 (2001) 29-37
35. Twiddy S.S., and Holmes E.C. The extent of homologous recombination in members of the genus Flavivirus. J. Gen. Virol. 84 Pt 2 (2003) 429-440
36. Uttenthal A., Le Potier M.F., Romero L., De Mia G.M., and Floegel-Niesmann G. Classical swine fever (CSF) marker vaccine. Trial I. Challenge studies in weaner pigs. Vet. Microbiol. 83 2 (2001) 85-106
37. Uzcategui N.Y., Camacho D., Comach G., Cuello de Uzcategui R., Holmes E.C., and Gould E.A. Molecular epidemiology of dengue type 2 virus in Venezuela: evidence for in situ virus evolution and recombination. J. Gen. Virol. 82 Pt 12 (2001) 2945-2953
38. Worobey M., and Holmes E.C. Homologous recombination in GB virus C/hepatitis G virus. Mol. Biol. Evol. 18 2 (2001) 254-261
39. Worobey M., Rambaut A., and Holmes E.C. Widespread intra-serotype recombination in natural populations of dengue virus. Proc. Natl. Acad. Sci. U.S.A. 96 13 (1999) 7352-7357
40. Wu H.X., Zhang C.Y., Zheng C.Y., and Guo J.Q. Genomic sequence determination of classical swine fever virus persistent infection strain. Wuhan Univ. J. Nat. Sci. 6 4 (2001) 864-866
41. Wu X.S., Luo T.R., Liao S.H., Liu Q.Z., and Huang W.J. Cloning and sequence analysis of genome of classical swine fever virus GXWZ02 strain epidemic in Guangxi. Chi. J. Vet. Sci. 25 2 (2003) 125-128