Analysis of protein-protein interaction using proteinChip array-based SELDI-TOF mass spectrometry

Methods in Molecular Biology

Volumn 818, Issue , 2012, Pages 217-226

  Jayachandran, Gitanjali ^a   Roth, Jack A ^a   Ji, Lin ^a  

^a UNIVERSITY OF TEXAS   (United States)

Author keywords

Apaf1; Fus1; Peptide interactions; ProteinChip; SELDI TOF MS; SEND ID

Indexed keywords

IMMOBILIZED PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PROTEIN ANALYSIS; PROTEIN MICROARRAY; TIME;

AMINO ACID SEQUENCE; IMMOBILIZED PROTEINS; MOLECULAR SEQUENCE DATA; PROTEIN ARRAY ANALYSIS; PROTEIN INTERACTION MAPPING; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TIME FACTORS;

EID: 82355183089     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-418-6_15     Document Type: Article

References (16)

1. Yaffe, M. B. and Cantley, L. C. (1999) Signal transduction. Grabbing phosphoproteins. Nature. 402, 30-31.
2. Yaffe, M. B. and Smerdon, S. J. (2001) PhosphoSerine/threonine binding domains: you can't pSERious? Structure. 9, R33-R38. (Pubitemid 32245868)
3. Schlessinger, J. (2002) A solid base for assaying protein kinase activity. Nat. Biotechnol. 20, 232-233.
4. Schlessinger, J. and Lemmon, M. A. (2003) SH2 and PTB domains in tyrosine kinase signaling. Sci. STKE. 2003, RE12.
5. Pawson, T. and Nash, P. (2000) Protein-protein interactions defi ne specifi city in signal transduction. Genes Develop. 14, 1027-1047. (Pubitemid 30324418)
6. Pawson, T. and Nash, P. (2003) Assembly of cell regulatory systems through protein interaction domains. Science. 300, 445-452. (Pubitemid 36444318)
7. Fanning, A. S. and Anderson, J. M. (1999) Protein modules as organizers of membrane structure. Curr. Opin. Cell Biol. 11, 432-439. (Pubitemid 29396788)
8. Fanning, A. S. and Anderson, J. M. (1998) PDZ domains and the formation of protein networks at the plasma membrane. Curr. Topics Microbiol. Immunol. 228, 209-233.
9. Fanning, A. S. and Anderson, J. M. (1999) Protein modules as organizers of membrane structure. Curr. Opin. Cell Biol. 11, 432-439. (Pubitemid 29396788)
10. Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M., Séraphin B. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17, 1030-1032. (Pubitemid 29474865)
11. Wilkins, M. R., Gasteiger, E., Gooley, A. A., Herbert, B. R., Molloy, M. P., Binz, P. A., Ou, K., Sanchez, J. C., Bairoch, A., Williams, K. L., and Hochstrasser, D. F. (1999) Highthroughput mass spectrometric discovery of protein post-translational modifi cations. J. Mol. Biol. 289, 645-657. (Pubitemid 29295130)
12. Jonsson, P. F., Cavanna, T., Zicha, D., and Bates, P. A. (2006) Cluster analysis of networks generated through homology: automatic identify cation of important protein communities involved in cancer metastasis. BMC Bioinformatics. 7, 2-14.
13. Liu, Y., Porta, A., Peng, X., Gengaro, K., Cunningham, E. B., Li, H., Dominguez, L. A., Bellido, T., and Christakos, S. (2004) Prevention of glucocorticoid-induced apoptosis in osteocytes and osteoblasts by calbindin- D-28k. J. Bone Miner. Res. 19, 479-490. (Pubitemid 38787404)
14. Ito, I., Ji, L., Tanaka, F., Saito, Y., Gopalan, B., Branch, C. D., Xu, K., Atkinson, E. N., Bekele, B. N., Stephens, L. C., Minna, J. D., Roth, J. A., and Ramesh, R. (2004) Liposomal vector mediated delivery of the 3p FUS1 gene demonstrates potent antitumor activity against human lung cancer in vivo. Cancer Gene Ther. 11, 733-739. (Pubitemid 39488471)
15. Kondo, M., Ji, L., Kamibayashi, C., Tomizawa, Y., Randle, D., Sekido, Y., Yokota, J., Kashuba, V., Zabarovsky, E., Kuzmin, I., Lerman, M., Roth, J., Minna, J. D. (2001) Overexpression of candidate tumor suppressor gene FUS1 isolated from the 3p21.3 homozygous deletion region leads to G1 arrest and growth inhibition of lung cancer cells. Oncogene. 20, 6258-6262. (Pubitemid 32964440)
16. Liu, X., Miller, C. W., Koeffler, P. H., and Berk, A. J. (1992) The p53 activation domain binds the TATA box-binding polypeptide in Holo- TFII-D, and a neighboring p53 domain inhibits transcription. Cell. 13, 3291-3300. (Pubitemid 23157267)