메뉴 건너뛰기




Volumn 16, Issue 12, 2011, Pages 1190-1199

GTP-dependent RNA 3'-terminal phosphate cyclase from the hyperthermophilic archaeon Pyrococcus furiosus

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; BACTERIAL ENZYME; GUANOSINE DIPHOSPHATE; GUANOSINE PHOSPHATE; GUANOSINE TRIPHOSPHATE; RNA 3' TERMINAL PHOSPHATE CYCLASE; UNCLASSIFIED DRUG;

EID: 82355175071     PISSN: 13569597     EISSN: 13652443     Source Type: Journal    
DOI: 10.1111/j.1365-2443.2011.01561.x     Document Type: Article
Times cited : (3)

References (28)
  • 1
    • 64549145787 scopus 로고    scopus 로고
    • PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance
    • Agrawal, A. & Huang, X. (2009) PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance. Bioinformatics 25, 1082-1083.
    • (2009) Bioinformatics , vol.25 , pp. 1082-1083
    • Agrawal, A.1    Huang, X.2
  • 3
    • 0034595214 scopus 로고    scopus 로고
    • Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis
    • Billy, E., Wegierski, T., Nasr, F. & Filipowicz, W. (2000) Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis. EMBO J. 19, 2115-2126.
    • (2000) EMBO J. , vol.19 , pp. 2115-2126
    • Billy, E.1    Wegierski, T.2    Nasr, F.3    Filipowicz, W.4
  • 4
    • 0346104820 scopus 로고    scopus 로고
    • The universal ancestor and the ancestor of bacteria were hyperthermophiles
    • Di Giulio, M. (2003) The universal ancestor and the ancestor of bacteria were hyperthermophiles. J. Mol. Evol. 57, 721-730.
    • (2003) J. Mol. Evol. , vol.57 , pp. 721-730
    • Di Giulio, M.1
  • 5
    • 13744262410 scopus 로고    scopus 로고
    • Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins
    • Englert, M. & Beier, H. (2005) Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins. Nucleic Acids Res. 33, 388-399.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 388-399
    • Englert, M.1    Beier, H.2
  • 6
    • 79952142391 scopus 로고    scopus 로고
    • Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation
    • Englert, M., Sheppard, K., Aslanian, A., Yates, J.R. 3rd & Soll, D. (2011) Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation. Proc. Natl Acad. Sci. USA 108, 1290-1295.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 1290-1295
    • Englert, M.1    Sheppard, K.2    Aslanian, A.3    Yates 3rd, J.R.4    Soll, D.5
  • 7
    • 78049291343 scopus 로고    scopus 로고
    • Branchiostoma floridae has separate healing and sealing enzymes for 5'-phosphate RNA ligation
    • Englert, M., Sheppard, K., Gundllapalli, S., Beier, H. & Soll, D. (2010) Branchiostoma floridae has separate healing and sealing enzymes for 5'-phosphate RNA ligation. Proc. Natl Acad. Sci. USA 107, 16834-16839.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 16834-16839
    • Englert, M.1    Sheppard, K.2    Gundllapalli, S.3    Beier, H.4    Soll, D.5
  • 8
    • 0021988616 scopus 로고
    • Cyclization of RNA 3'-terminal phosphate by cyclase from HeLa cells proceeds via formation of N(3')pp(5')A activated intermediate
    • Filipowicz, W., Strugala, K., Konarska, M. & Shatkin, A.J. (1985) Cyclization of RNA 3'-terminal phosphate by cyclase from HeLa cells proceeds via formation of N(3')pp(5')A activated intermediate. Proc. Natl Acad. Sci. USA 82, 1316-1320.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 1316-1320
    • Filipowicz, W.1    Strugala, K.2    Konarska, M.3    Shatkin, A.J.4
  • 9
    • 0030926016 scopus 로고    scopus 로고
    • The human RNA 3'-terminal phosphate cyclase is a member of a new family of proteins conserved in Eucarya, Bacteria and Archaea
    • Genschik, P., Billy, E., Swianiewicz, M. & Filipowicz, W. (1997) The human RNA 3'-terminal phosphate cyclase is a member of a new family of proteins conserved in Eucarya, Bacteria and Archaea. EMBO J. 16, 2955-2967.
    • (1997) EMBO J. , vol.16 , pp. 2955-2967
    • Genschik, P.1    Billy, E.2    Swianiewicz, M.3    Filipowicz, W.4
  • 10
    • 0032566718 scopus 로고    scopus 로고
    • Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon
    • Genschik, P., Drabikowski, K. & Filipowicz, W. (1998) Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon. J. Biol. Chem. 273, 25516-25526.
    • (1998) J. Biol. Chem. , vol.273 , pp. 25516-25526
    • Genschik, P.1    Drabikowski, K.2    Filipowicz, W.3
  • 11
    • 0000610246 scopus 로고    scopus 로고
    • Introns and the RNA world
    • (eds Gesteland R.F., Cech T.R. & Atkins J.F.), 2nd edn -. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
    • Gilbert, W. & de Souza, S. J. (1999) Introns and the RNA world. In: The RNA World (eds Gesteland R.F., Cech T.R. & Atkins J.F.), 2nd edn, pp. 221-231. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
    • (1999) The RNA World , pp. 221-231
    • Gilbert, W.1    de Souza, S.J.2
  • 12
    • 0030771488 scopus 로고    scopus 로고
    • Formation of 2',3'-cyclic phosphates at the 3' end of human U6 small nuclear RNA in vitro. Identification of 2',3'-cyclic phosphates at the 3' ends of human signal recognition particle and mitochondrial RNA processing RNAs
    • Gu, J., Shumyatsky, G., Makan, N. & Reddy, R. (1997) Formation of 2', 3'-cyclic phosphates at the 3' end of human U6 small nuclear RNA in vitro. Identification of 2', 3'-cyclic phosphates at the 3' ends of human signal recognition particle and mitochondrial RNA processing RNAs. J. Biol. Chem. 272, 21989-21993.
    • (1997) J. Biol. Chem. , vol.272 , pp. 21989-21993
    • Gu, J.1    Shumyatsky, G.2    Makan, N.3    Reddy, R.4
  • 13
    • 0034669054 scopus 로고    scopus 로고
    • Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction
    • Hofmann, A., Zdanov, A., Genschik, P., Ruvinov, S., Filipowicz, W. & Wlodawer, A. (2000) Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction. EMBO J. 19, 6207-6217.
    • (2000) EMBO J. , vol.19 , pp. 6207-6217
    • Hofmann, A.1    Zdanov, A.2    Genschik, P.3    Ruvinov, S.4    Filipowicz, W.5    Wlodawer, A.6
  • 14
    • 0038630513 scopus 로고    scopus 로고
    • Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus
    • Kanai, A., Oida, H., Matsuura, N. & Doi, H. (2003) Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus. Biochem. J. 372, 253-261.
    • (2003) Biochem. J. , vol.372 , pp. 253-261
    • Kanai, A.1    Oida, H.2    Matsuura, N.3    Doi, H.4
  • 15
    • 60849084559 scopus 로고    scopus 로고
    • Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus
    • Kanai, A., Sato, A., Fukuda, Y., Okada, K., Matsuda, T., Sakamoto, T., Muto, Y., Yokoyama, S., Kawai, G. & Tomita, M. (2009) Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus. RNA 15, 420-431.
    • (2009) RNA , vol.15 , pp. 420-431
    • Kanai, A.1    Sato, A.2    Fukuda, Y.3    Okada, K.4    Matsuda, T.5    Sakamoto, T.6    Muto, Y.7    Yokoyama, S.8    Kawai, G.9    Tomita, M.10
  • 16
    • 30044448687 scopus 로고    scopus 로고
    • Archaeal Pyrococcus furiosus thymidylate synthase 1 is an RNA-binding protein
    • Kanai, A., Sato, A., Imoto, J. & Tomita, M. (2006) Archaeal Pyrococcus furiosus thymidylate synthase 1 is an RNA-binding protein. Biochem. J. 393, 373-379.
    • (2006) Biochem. J. , vol.393 , pp. 373-379
    • Kanai, A.1    Sato, A.2    Imoto, J.3    Tomita, M.4
  • 17
    • 0141856111 scopus 로고    scopus 로고
    • Adenosine 5'-O-(3-thio)triphosphate (ATPgammaS) is a substrate for the nucleotide hydrolysis and RNA unwinding activities of eukaryotic translation initiation factor eIF4A
    • Peck, M.L. & Herschlag, D. (2003) Adenosine 5'-O-(3-thio)triphosphate (ATPgammaS) is a substrate for the nucleotide hydrolysis and RNA unwinding activities of eukaryotic translation initiation factor eIF4A. RNA 9, 1180-1187.
    • (2003) RNA , vol.9 , pp. 1180-1187
    • Peck, M.L.1    Herschlag, D.2
  • 18
    • 0021832279 scopus 로고
    • The enzymatic conversion of 3'-phosphate terminated RNA chains to 2',3'-cyclic phosphate derivatives
    • Reinberg, D., Arenas, J. & Hurwitz, J. (1985) The enzymatic conversion of 3'-phosphate terminated RNA chains to 2', 3'-cyclic phosphate derivatives. J. Biol. Chem. 260, 6088-6097.
    • (1985) J. Biol. Chem. , vol.260 , pp. 6088-6097
    • Reinberg, D.1    Arenas, J.2    Hurwitz, J.3
  • 20
    • 0041734767 scopus 로고    scopus 로고
    • Cooperative regulation for Okazaki fragment processing by RNase HII and FEN-1 purified from a hyperthermophilic archaeon, Pyrococcus furiosus
    • Sato, A., Kanai, A., Itaya, M. & Tomita, M. (2003) Cooperative regulation for Okazaki fragment processing by RNase HII and FEN-1 purified from a hyperthermophilic archaeon, Pyrococcus furiosus. Biochem. Biophys. Res. Commun. 309, 247-252.
    • (2003) Biochem. Biophys. Res. Commun. , vol.309 , pp. 247-252
    • Sato, A.1    Kanai, A.2    Itaya, M.3    Tomita, M.4
  • 21
    • 38649108114 scopus 로고    scopus 로고
    • Mammalian 2',3' cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo
    • Schwer, B., Aronova, A., Ramirez, A., Braun, P. & Shuman, S. (2008) Mammalian 2', 3' cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo. RNA 14, 204-210.
    • (2008) RNA , vol.14 , pp. 204-210
    • Schwer, B.1    Aronova, A.2    Ramirez, A.3    Braun, P.4    Shuman, S.5
  • 23
    • 0019307789 scopus 로고
    • The role of ATP in in vitro vaccinia virus RNA synthesis effects of AMP-PNP and ATP gamma S
    • Shuman, S., Spencer, E., Furneaux, H. & Hurwitz, J. (1980) The role of ATP in in vitro vaccinia virus RNA synthesis effects of AMP-PNP and ATP gamma S. J. Biol. Chem. 255, 5396-5403.
    • (1980) J. Biol. Chem. , vol.255 , pp. 5396-5403
    • Shuman, S.1    Spencer, E.2    Furneaux, H.3    Hurwitz, J.4
  • 24
    • 68049109441 scopus 로고    scopus 로고
    • Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry
    • Soga, T., Igarashi, K., Ito, C., Mizobuchi, K., Zimmermann, H.P. & Tomita, M. (2009) Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry. Anal. Chem. 81, 6165-6174.
    • (2009) Anal. Chem. , vol.81 , pp. 6165-6174
    • Soga, T.1    Igarashi, K.2    Ito, C.3    Mizobuchi, K.4    Zimmermann, H.P.5    Tomita, M.6
  • 25
    • 70349149888 scopus 로고    scopus 로고
    • Structure-activity relationships in human RNA 3'-phosphate cyclase
    • Tanaka, N. & Shuman, S. (2009) Structure-activity relationships in human RNA 3'-phosphate cyclase. RNA 15, 1865-1874.
    • (2009) RNA , vol.15 , pp. 1865-1874
    • Tanaka, N.1    Shuman, S.2
  • 26
    • 77951650971 scopus 로고    scopus 로고
    • Structure of the RNA 3'-phosphate cyclase-adenylate intermediate illuminates nucleotide specificity and covalent nucleotidyl transfer
    • Tanaka, N., Smith, P. & Shuman, S. (2010) Structure of the RNA 3'-phosphate cyclase-adenylate intermediate illuminates nucleotide specificity and covalent nucleotidyl transfer. Structure 18, 449-457.
    • (2010) Structure , vol.18 , pp. 449-457
    • Tanaka, N.1    Smith, P.2    Shuman, S.3
  • 27
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. & Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 28
    • 32644444603 scopus 로고    scopus 로고
    • Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog
    • Wang, L.K., Schwer, B., Englert, M., Beier, H. & Shuman, S. (2006) Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog. Nucleic Acids Res. 34, 517-527.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 517-527
    • Wang, L.K.1    Schwer, B.2    Englert, M.3    Beier, H.4    Shuman, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.