-
1
-
-
0003005414
-
RNA ligases: Function, mechanism and sequence conservation
-
Simons, R.W. and Grunberg-Manago, M. (eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Arn, E.A. and Abelson, J.N. (1998) RNA ligases: function, mechanism and sequence conservation. In Simons, R.W. and Grunberg-Manago, M. (eds), RNA Structure and Function. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 695-726.
-
(1998)
RNA Structure and Function
, pp. 695-726
-
-
Arn, E.A.1
Abelson, J.N.2
-
2
-
-
0030572699
-
The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
-
Balakin, A.G., Smith, L. and Fournier, M.J. (1996) The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell, 86, 823-834.
-
(1996)
Cell
, vol.86
, pp. 823-834
-
-
Balakin, A.G.1
Smith, L.2
Fournier, M.J.3
-
3
-
-
0027237665
-
A simple and efficient method for direct gene deletion in S.cerevisiae
-
Baudin, A., Ozier-Kalogeropoulos, O., Denouel, A., Lacroute, F. and Cullin, C. (1993) A simple and efficient method for direct gene deletion in S.cerevisiae. Nucleic Acids Res., 21, 3329-3330.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3329-3330
-
-
Baudin, A.1
Ozier-Kalogeropoulos, O.2
Denouel, A.3
Lacroute, F.4
Cullin, C.5
-
4
-
-
0026579730
-
Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA
-
Beltrame, M. and Tollervey, D. (1992) Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. EMBO J., 11, 1531-1542.
-
(1992)
EMBO J.
, vol.11
, pp. 1531-1542
-
-
Beltrame, M.1
Tollervey, D.2
-
5
-
-
0029093602
-
Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis
-
Beltrame, M. and Tollervey, D. (1995) Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis. EMBO J., 14, 4350-4356.
-
(1995)
EMBO J.
, vol.14
, pp. 4350-4356
-
-
Beltrame, M.1
Tollervey, D.2
-
6
-
-
0033521092
-
Characterization of the adenylation site in the RNA 3′-terminal phosphate cyclase from E.coli
-
Billy, E., Hess, D., Hofsteenge, J. and Filipowicz, W. (1999) Characterization of the adenylation site in the RNA 3′-terminal phosphate cyclase from E.coli. J. Biol. Chem., 274, 34955-34960.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 34955-34960
-
-
Billy, E.1
Hess, D.2
Hofsteenge, J.3
Filipowicz, W.4
-
7
-
-
0025785410
-
A family of low and high copy replicative, integrative and single-stranded S.cerevisiael E.coli shuttle vectors
-
Bonneaud, N., Ozier-Kalogeropoulos, O., Li, G.Y., Labouesse, M., Minvielle-Sebastia, L. and Lacroute, F. (1991) A family of low and high copy replicative, integrative and single-stranded S.cerevisiael E.coli shuttle vectors. Yeast, 7, 609-615.
-
(1991)
Yeast
, vol.7
, pp. 609-615
-
-
Bonneaud, N.1
Ozier-Kalogeropoulos, O.2
Li, G.Y.3
Labouesse, M.4
Minvielle-Sebastia, L.5
Lacroute, F.6
-
9
-
-
0033133863
-
Unwinding RNA in S.cerevisiae: DEAD-box proteins and related families
-
de la Cruz, J., Kressler, D. and Linder, P. (1999) Unwinding RNA in S.cerevisiae: DEAD-box proteins and related families. Trends Biochem. Sci., 24, 192-198.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 192-198
-
-
De La Cruz, J.1
Kressler, D.2
Linder, P.3
-
10
-
-
0030765368
-
Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast
-
Dunbar, D.A., Wormsley, S., Agentis, T.M. and Baserga, S.J. (1997) Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast. Mol. Cell. Biol., 17, 5803-5812.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 5803-5812
-
-
Dunbar, D.A.1
Wormsley, S.2
Agentis, T.M.3
Baserga, S.J.4
-
11
-
-
0028244868
-
Isolation of S.cerevisiae snRNPs: Comparison of U1 and U4/U6.U5 to their human counterparts
-
Fabrizio, P., Esser, S., Kastner, B. and Luhrmann, R. (1994) Isolation of S.cerevisiae snRNPs: comparison of U1 and U4/U6.U5 to their human counterparts. Science, 264, 261-265.
-
(1994)
Science
, vol.264
, pp. 261-265
-
-
Fabrizio, P.1
Esser, S.2
Kastner, B.3
Luhrmann, R.4
-
12
-
-
0025362610
-
RNA 3′-terminal phosphate cyclase from HeLa cells
-
Filipowicz, W. and Vicente, O. (1990) RNA 3′-terminal phosphate cyclase from HeLa cells. Methods Enzymol., 181, 499-510.
-
(1990)
Methods Enzymol.
, vol.181
, pp. 499-510
-
-
Filipowicz, W.1
Vicente, O.2
-
13
-
-
0021100686
-
RNA 3′-terminal phosphate cyclase activity and RNA ligation in HeLa cell extract
-
Filipowicz, W., Konarska, M., Gross, H.J. and Shatkin, A.J. (1983) RNA 3′-terminal phosphate cyclase activity and RNA ligation in HeLa cell extract. Nucleic Acids Res., 11, 1405-1418.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 1405-1418
-
-
Filipowicz, W.1
Konarska, M.2
Gross, H.J.3
Shatkin, A.J.4
-
14
-
-
0021988616
-
Cyclization of RNA 3′-terminal phosphate by cyclase from HeLa cells proceeds via formation of N (3′)pp (5′)A activated intermediate
-
Filipowicz, W., Strugala, K., Konarska, M. and Shatkin, A.J. (1985) Cyclization of RNA 3′-terminal phosphate by cyclase from HeLa cells proceeds via formation of N (3′)pp (5′)A activated intermediate. Proc. Natl Acad. Sci. USA, 82, 1316-1320.
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 1316-1320
-
-
Filipowicz, W.1
Strugala, K.2
Konarska, M.3
Shatkin, A.J.4
-
15
-
-
0031003901
-
The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation
-
Ganot, P., Caizergues-Ferrer, M. and Kiss, T. (1997) The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. Genes Dev., 11, 941-956.
-
(1997)
Genes Dev.
, vol.11
, pp. 941-956
-
-
Ganot, P.1
Caizergues-Ferrer, M.2
Kiss, T.3
-
16
-
-
0030926016
-
The human RNA 3′-terminal phosphate cyclase is a member of a new family of proteins conserved in eucarya. Bacteria and archaea
-
Genschik, P., Billy, E., Swianiewicz, M. and Filipowicz, W. (1997) The human RNA 3′-terminal phosphate cyclase is a member of a new family of proteins conserved in Eucarya. Bacteria and Archaea. EMBO J., 16, 2955-2967.
-
(1997)
EMBO J.
, vol.16
, pp. 2955-2967
-
-
Genschik, P.1
Billy, E.2
Swianiewicz, M.3
Filipowicz, W.4
-
17
-
-
0032566718
-
Characterization of the E.coli RNA 3′-terminal phosphate cyclase and its σ54-regulated operon
-
Genschik, P., Drabikowski, K. and Filipowicz, W. (1998) Characterization of the E.coli RNA 3′-terminal phosphate cyclase and its σ54-regulated operon, J. Biol. Chem., 273, 25516-25526.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 25516-25526
-
-
Genschik, P.1
Drabikowski, K.2
Filipowicz, W.3
-
18
-
-
0030596520
-
Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA
-
Hughes, J.M. (1996) Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA. J. Mol. Biol., 259, 645-654.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 645-654
-
-
Hughes, J.M.1
-
19
-
-
0025932166
-
Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA
-
Hughes, J.M. and Ares, M.J. (1991) Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J., 10, 4231-4239.
-
(1991)
EMBO J.
, vol.10
, pp. 4231-4239
-
-
Hughes, J.M.1
Ares, M.J.2
-
20
-
-
0027153326
-
A U3 snoRNP protein with homology to splicing factor PRP4 and G β domains is required for ribosomal RNA processing
-
Jansen, R., Tollervey, D. and Hurt, E.C. (1993) A U3 snoRNP protein with homology to splicing factor PRP4 and G β domains is required for ribosomal RNA processing. EMBO J., 12, 2549-2558.
-
(1993)
EMBO J.
, vol.12
, pp. 2549-2558
-
-
Jansen, R.1
Tollervey, D.2
Hurt, E.C.3
-
21
-
-
0029852510
-
Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I
-
Jenny, A., Minvielle-Sebastia, L., Preker, P.J. and Keller, W. (1996) Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I. Science, 274, 1514-1517.
-
(1996)
Science
, vol.274
, pp. 1514-1517
-
-
Jenny, A.1
Minvielle-Sebastia, L.2
Preker, P.J.3
Keller, W.4
-
22
-
-
0024994984
-
The first pre-rRNA-processing event occurs in a large complex: Analysis by gel retardation, sedimentation and UV cross-linking
-
Kass, S. and Sollner-Webb, B. (1990) The first pre-rRNA-processing event occurs in a large complex: analysis by gel retardation, sedimentation and UV cross-linking. Mol. Cell. Biol., 10, 4920-4931.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 4920-4931
-
-
Kass, S.1
Sollner-Webb, B.2
-
23
-
-
0033509092
-
Protein trans-acting factors involved in ribosome biogenesis in S.cerevisiae
-
Kressler, D., Linder, P. and de la Cruz, J. (1999) Protein trans-acting factors involved in ribosome biogenesis in S.cerevisiae. Mol. Cell. Biol., 19, 7897-7912.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 7897-7912
-
-
Kressler, D.1
Linder, P.2
De La Cruz, J.3
-
24
-
-
0028866774
-
The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast
-
Lafontaine, D., Vandenhaute, J. and Tollervey, D. (1995) The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast. Genes Dev., 9, 2470-2481.
-
(1995)
Genes Dev.
, vol.9
, pp. 2470-2481
-
-
Lafontaine, D.1
Vandenhaute, J.2
Tollervey, D.3
-
25
-
-
0031444668
-
Functional separation of pre-rRNA processing steps revealed by truncation of the U3 small nucleolar ribonucleoprotein component. Mpp10
-
Lee, S.J. and Baserga, S.J. (1997) Functional separation of pre-rRNA processing steps revealed by truncation of the U3 small nucleolar ribonucleoprotein component. Mpp10. Proc. Natl Acad. Sci. USA, 94, 13536-13541.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 13536-13541
-
-
Lee, S.J.1
Baserga, S.J.2
-
26
-
-
0032808151
-
Imp3p and Imp4p, two specific components of the U3 small nucleolar ribonucleoprotein that are essential for pre-18S rRNA processing
-
Lee, S.J. and Baserga, S.J. (1999) Imp3p and Imp4p, two specific components of the U3 small nucleolar ribonucleoprotein that are essential for pre-18S rRNA processing. Mol. Cell. Biol., 19, 5441-5452.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 5441-5452
-
-
Lee, S.J.1
Baserga, S.J.2
-
27
-
-
0025166298
-
Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in S.cerevisiae
-
Li, H.D., Zagorski, J. and Fournier, M.J. (1990) Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in S.cerevisiae. Mol. Cell. Biol., 10, 1145-1152.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 1145-1152
-
-
Li, H.D.1
Zagorski, J.2
Fournier, M.J.3
-
28
-
-
0026565203
-
Cyclic 2′, 3′-phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNAs
-
Lund, E. and Dahlberg, J.E. (1992) Cyclic 2′, 3′-phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNAs. Science, 255, 327-330.
-
(1992)
Science
, vol.255
, pp. 327-330
-
-
Lund, E.1
Dahlberg, J.E.2
-
30
-
-
0027447757
-
Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis
-
Morrissey, J.P. and Tollervey, D. (1993) Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis. Mol. Cell. Biol., 13, 2469-2477.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 2469-2477
-
-
Morrissey, J.P.1
Tollervey, D.2
-
31
-
-
0027259044
-
The terminal halls characteristic of eukaryotic rRNA transcription units in chromatin spreads are rRNA processing complexes
-
Mougey, E.B., O'Reilly, M., Osheim, Y., Miller, O.L., Beyer, A. and Sollner-Webb, B. (1993) The terminal halls characteristic of eukaryotic rRNA transcription units in chromatin spreads are rRNA processing complexes. Genes Dev., 7, 1609-1619.
-
(1993)
Genes Dev.
, vol.7
, pp. 1609-1619
-
-
Mougey, E.B.1
O'Reilly, M.2
Osheim, Y.3
Miller, O.L.4
Beyer, A.5
Sollner-Webb, B.6
-
32
-
-
0034650343
-
Crystal structure of RNA 3′-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology
-
Palm, J.G., Billy, E., Filipowicz, W. and Wlodawer, A. (2000) Crystal structure of RNA 3′-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology. Structure, 8, 13-23.
-
(2000)
Structure
, vol.8
, pp. 13-23
-
-
Palm, J.G.1
Billy, E.2
Filipowicz, W.3
Wlodawer, A.4
-
33
-
-
0032531048
-
New constructs and strategies for efficient PCR-based gene manipulations in yeast
-
Puig, O., Rutz, B., Luukkonen, B.G., Kandels-Lewis, S., Bragado-Nilsson, E. and Seraphin, B. (1998) New constructs and strategies for efficient PCR-based gene manipulations in yeast. Yeast, 14, 1139-1146.
-
(1998)
Yeast
, vol.14
, pp. 1139-1146
-
-
Puig, O.1
Rutz, B.2
Luukkonen, B.G.3
Kandels-Lewis, S.4
Bragado-Nilsson, E.5
Seraphin, B.6
-
34
-
-
0021832279
-
The enzymatic conversion of 3′-phosphate terminated RNA chains to 2′, 3′-cyclic phosphate derivatives
-
Reinberg, D., Arenas, J. and Hurwitz, J. (1985) The enzymatic conversion of 3′-phosphate terminated RNA chains to 2′, 3′-cyclic phosphate derivatives. J. Biol. Chem., 260, 6088-6097.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 6088-6097
-
-
Reinberg, D.1
Arenas, J.2
Hurwitz, J.3
-
35
-
-
0033564627
-
Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
-
Salgado-Garrido, J., Bragado-Nilsson, E., Kandels-Lewis, S. and Seraphin, B. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J., 18, 3451-3462.
-
(1999)
EMBO J.
, vol.18
, pp. 3451-3462
-
-
Salgado-Garrido, J.1
Bragado-Nilsson, E.2
Kandels-Lewis, S.3
Seraphin, B.4
-
36
-
-
0032771416
-
Base pairing between U3 small nucleolar RNA and the 5′ end of 18S rRNA is required for pre-rRNA processing
-
Sharma, K. and Tollervey, D. (1999) Base pairing between U3 small nucleolar RNA and the 5′ end of 18S rRNA is required for pre-rRNA processing. Mol. Cell. Biol., 19, 6012-6019.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 6012-6019
-
-
Sharma, K.1
Tollervey, D.2
-
37
-
-
0023661309
-
A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA
-
Tollervey, D. (1987) A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J., 6, 4169-4175.
-
(1987)
EMBO J.
, vol.6
, pp. 4169-4175
-
-
Tollervey, D.1
-
38
-
-
0030963268
-
Function and synthesis of small nucleolar RNAs
-
Tollervey, D. and Kiss, T. (1997) Function and synthesis of small nucleolar RNAs. Curr. Opin. Cell Biol., 9, 337-342.
-
(1997)
Curr. Opin. Cell Biol.
, vol.9
, pp. 337-342
-
-
Tollervey, D.1
Kiss, T.2
-
39
-
-
0016423513
-
Ribosomal precursor particles from yeast
-
Trapman, J., Retel, J. and Planta, R.J. (1975) Ribosomal precursor particles from yeast. Exp. Cell Res., 90, 95-104.
-
(1975)
Exp. Cell Res.
, vol.90
, pp. 95-104
-
-
Trapman, J.1
Retel, J.2
Planta, R.J.3
-
40
-
-
0029618257
-
Processing of pre-ribosomal RNA in S.cerevisiae
-
Venema, J. and Tollervey, D. (1995) Processing of pre-ribosomal RNA in S.cerevisiae. Yeast, 11, 1629-1650.
-
(1995)
Yeast
, vol.11
, pp. 1629-1650
-
-
Venema, J.1
Tollervey, D.2
-
41
-
-
0344765459
-
Synthetic lethal interactions with conditional poly(A) polymerase alleles identify LCP5, a gene involved in 18S rRNA maturation
-
Wiederkehr, T., Pretot, R.F. and Minvielle-Sebastia, L. (1998) Synthetic lethal interactions with conditional poly(A) polymerase alleles identify LCP5, a gene involved in 18S rRNA maturation. RNA, 4, 1357-1372.
-
(1998)
RNA
, vol.4
, pp. 1357-1372
-
-
Wiederkehr, T.1
Pretot, R.F.2
Minvielle-Sebastia, L.3
-
42
-
-
0033529707
-
Functional characterization of the S.cerevisiae genome by gene deletion and parallel analysis
-
Winzeler, E.A. et al. (1999) Functional characterization of the S.cerevisiae genome by gene deletion and parallel analysis. Science, 285, 901-906.
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
-
43
-
-
0030745619
-
S.Cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis
-
Zanchin, N.I., Roberts, P., DeSilva, A., Sherman, F. and Goldfarb, D.S. (1997) S.cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis. Mol. Cell. Biol., 17, 5001-5015.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 5001-5015
-
-
Zanchin, N.I.1
Roberts, P.2
DeSilva, A.3
Sherman, F.4
Goldfarb, D.S.5
|